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Searched refs:transcriptomebits (Results 1 – 5 of 5) sorted by relevance

/dports/biology/gmap/gmap-2020-09-12/src/
H A Dkmer-search.h26 Genome_T transcriptomebits, Transcriptome_T transcriptome);
37 Univ_IIT_T transcript_iit, Transcriptome_T transcriptome, Genome_T transcriptomebits,
H A Dkmer-search.c1788 query_compress_fwd,transcriptomebits,NULL, in search_transcriptome_complete()
1804 query_compress_fwd,transcriptomebits,NULL, in search_transcriptome_complete()
2340 query_compress_rev,transcriptomebits,NULL, in search_transcriptome_complete()
2357 query_compress_rev,transcriptomebits,NULL, in search_transcriptome_complete()
4629 transcript_iit,transcriptome,transcriptomebits, in Kmer_search_transcriptome_single()
4653 transcript_iit,transcriptome,transcriptomebits, in Kmer_search_transcriptome_single()
4733 transcript_iit,transcriptome,transcriptomebits,
4756 transcript_iit,transcriptome,transcriptomebits,
4775 transcript_iit,transcriptome,transcriptomebits,
4798 transcript_iit,transcriptome,transcriptomebits,
[all …]
H A Dgsnap.c230 static Genome_T transcriptomebits = NULL; variable
3084 …transcriptomebits = Genome_new(transcriptomesubdir,transcriptome_fileroot,/*snps_root*/NULL,/*geno… in worker_setup()
3113 …transcriptomebits = Genome_new(transcriptomesubdir,transcriptome_fileroot,/*snps_root*/NULL,/*geno… in worker_setup()
3490 Stage1hr_setup(transcript_iit,transcriptome,transcriptomebits,use_only_transcriptome_p, in worker_setup()
3507 transcriptomebits,transcriptome,transcript_iit, in worker_setup()
3560 if (transcriptomebits != NULL) { in worker_cleanup()
3561 Genome_free(&transcriptomebits); in worker_cleanup()
H A Dstage1hr.c149 static Genome_T transcriptomebits; variable
1037 transcript_iit,transcriptomebits,transcriptome)) != NULL) { in remap_to_transcriptome()
1130 transcript_iit,transcriptome,transcriptomebits, in single_read_search()
3045 transcriptomebits = transcriptomebits_in; in Stage1hr_setup()
H A Dstage3hr.c197 static Genome_T transcriptomebits; variable
275 transcriptomebits = transcriptomebits_in; in Stage3hr_setup()
5579 transcript_iit,transcriptomebits,transcriptome)) != NULL) { in Stage3end_new_splice()
5589 transcript_iit,transcriptomebits,transcriptome)) != NULL) { in Stage3end_new_splice()
5871 transcript_iit,transcriptomebits,transcriptome)) != NULL) { in Stage3end_new_distant()
5881 transcript_iit,transcriptomebits,transcriptome)) != NULL) { in Stage3end_new_distant()
11820 transcript_iit,transcriptomebits,transcriptome)) != NULL) { in Stage3pair_new()
11834 transcript_iit,transcriptomebits,transcriptome)) != NULL) { in Stage3pair_new()