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Searched refs:treetimes (Results 1 – 6 of 6) sorted by relevance

/dports/biology/migrate/migrate-3.6.11/src/
H A Dbayes.c398 long T = world->treetimes->T; in probg_treetimes()
399 vtlist *tl = world->treetimes->tl; // comment this out to in probg_treetimes()
1480 construct_tymelist (world, &world->treetimes[0]); in recalc_timelist()
1504 for (k = 0; k < world->treetimes[0].T; k++) in recalc_timelist_1()
1506 world->treetimes[0].tl[k].age *= new_old_ratio; in recalc_timelist_1()
1507 age = world->treetimes[0].tl[k].age; in recalc_timelist_1()
1508 theNode = world->treetimes[0].tl[k].eventnode; in recalc_timelist_1()
1511 for (k = 0; k < world->treetimes[0].T; k++) in recalc_timelist_1()
1513 theNode = world->treetimes[0].tl[k].eventnode; in recalc_timelist_1()
1521 …- |||| %li %li\n",theNode->id, theNode->tyme, world->treetimes[0].tl[k].lineages[0],world->treetim… in recalc_timelist_1()
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H A Dmcmc1.c183 new_localtimelist (&timevector, &world->treetimes[0], world->numpop); in tree_update()
189 set_new_proposal (&proposal, &world->treetimes[0], world); in tree_update()
193 new_proposal (&proposal, &world->treetimes[0], world); in tree_update()
406 construct_tymelist (world, &world->treetimes[0]); in tree_update()
440 new_localtimelist (&timevector, &world->treetimes[0], world->numpop); in slatkin_importance()
835 …prune_timelist(&proposal->world->treetimes[0],timevector, proposal->aboveorigin, proposal, proposa… in construct_localtimelist()
H A Dmain.c1103 free_timevector (universe[i]->treetimes); in run_sampler()
1109 free_timevector (EARTH->treetimes); in run_sampler()
1286 create_treetimelist (world, &(world->treetimes), locus); in change_chaintype()
1305 EARTH->treetimes[0].copies = 0; in prepare_next_chain()
1748 create_treetimelist (world, &world->treetimes, locus); in setup_locus()
1801 store_events(world, world->treetimes, world->numpop, rep); in condense_time()
1832 copy_time (world, world->treetimes, FIRSTSTEP, 0L, world->numpop, rep); in condense_time()
1839 copy_time (world, world->treetimes, *G, *G + (long) (*j > 0), in condense_time()
H A Dworld.c216 (*world)->treetimes = (timelist_fmt *) mycalloc (1, sizeof (timelist_fmt)); in create_world()
4098 create_treetimelist (kopie, &kopie->treetimes, kopie->locus); in klone()
4274 templist = tthis->treetimes; in chance_swap_tree()
4275 tthis->treetimes = that->treetimes; in chance_swap_tree()
4276 that->treetimes = templist; in chance_swap_tree()
4455 templist = tthis->treetimes; in chance_swap_tree_unreadable_obsolete()
4456 tthis->treetimes = that->treetimes; in chance_swap_tree_unreadable_obsolete()
4457 that->treetimes = templist; in chance_swap_tree_unreadable_obsolete()
H A Dtree.c1595 for (k = 0; k < world->treetimes[0].T - 1; k++) in fix_times()
1597 theNode = world->treetimes[0].tl[k].eventnode; in fix_times()
1606 world->treetimes[0].tl[k].age = tipdate; in fix_times()
1612 world->treetimes[0].tl[k].age = age; in fix_times()
1620 adjust_time (world->treetimes[0].tl[k].eventnode, age+10000); in fix_times()
2378 myfree(world->treetimes[size].lineages); in free_treetimes()
2379 myfree(world->treetimes[size].tl); in free_treetimes()
5612 k = world->treetimes[0].tl[interval].lineages[pop]; in inverse_logprob_noevent()
5620 if(world->treetimes[0].tl[interval].eventnode->type=='t') in inverse_logprob_noevent()
5622 return world->treetimes[0].tl[interval].age; in inverse_logprob_noevent()
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H A Dmigration.h1133 timelist_fmt *treetimes; member