| /dports/biology/bamutil/bamUtil-1.0.15/libStatGen/general/test/ |
| H A D | TrimSequence_test.cpp | 28 result = trimSequence(test, '5', true); in TEST()
32 result = trimSequence(test, '5', true); in TEST()
36 result = trimSequence(test, '5', true); in TEST()
40 result = trimSequence(test, '5', true); in TEST()
44 result = trimSequence(test, '5', false); in TEST()
48 result = trimSequence(test, '5', false); in TEST()
60 result = trimSequence(test, 'A', true); in TEST()
64 result = trimSequence(test, '~', true); in TEST()
68 result = trimSequence(test, 'B', true); in TEST()
72 result = trimSequence(test, 'B', true); in TEST()
[all …]
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| H A D | STLUtilities_test.cpp | 40 result = trimSequence(test, '5', true); in TEST()
44 result = trimSequence(test, 'A', true); in TEST()
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| H A D | Makefile | 6 …kedVectorTest referenceSequenceTest nonOverlapRegions baseUtilitiesTest trimSequence reusableVector
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| /dports/biology/bamutil/bamUtil-1.0.15/libStatGen/general/test/trimSequence/ |
| H A D | TrimSequence.cpp | 34 result = trimSequence(test, 'A', true); in main()
38 result = trimSequence(test, '~', true); in main()
42 result = trimSequence(test, 'B', true); in main()
46 result = trimSequence(test, 'B', true); in main()
50 result = trimSequence(test, 'F', true); in main()
54 result = trimSequence(test, '@', true); in main()
58 result = trimSequence(test, '@', true); in main()
62 result = trimSequence(test, 'F', true); in main()
67 result = trimSequence(test, 'F', true); in main()
74 result = trimSequence(test, 'A', false); in main()
[all …]
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| H A D | Makefile | 2 EXE = trimSequence
4 TEST_COMMAND= ./trimSequence
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| H A D | .gitignore | 1 trimSequence
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| /dports/biology/lamarc/lamarc-2.1.8/src/conversion/ |
| H A D | Sequence.cpp | 27 trimSequence(); in Sequence()
42 trimSequence(); in Sequence()
64 if (dataType == lamarcstrings::DNA || dataType == lamarcstrings::SNP ) trimSequence(); in Sequence()
149 Sequence::trimSequence() in trimSequence() function in Sequence
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| H A D | Converter_Sequence.h | 45 void trimSequence(); // Trims the leading and trailing
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| /dports/biology/ugene/ugene-40.1/src/plugins/workflow_designer/src/tasks/ |
| H A D | SequenceQualityTrimTask.cpp | 63 const U2Region acceptedRegion = trimSequence(); in run()
120 U2Region SequenceQualityTrimTask::trimSequence() { in trimSequence() function in U2::SequenceQualityTrimTask
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| H A D | SequenceQualityTrimTask.h | 60 U2Region trimSequence();
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| /dports/biology/bamutil/bamUtil-1.0.15/libStatGen/general/ |
| H A D | TrimSequence.h | 64 typename sequenceType::iterator trimSequence(sequenceType &sequence, meanValueType meanValue, const… in trimSequence() function
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| /dports/java/openjdk8/jdk8u-jdk8u312-b07.1/langtools/src/share/classes/com/sun/tools/javac/tree/ |
| H A D | Pretty.java | 85 private final static String trimSequence = "[...]"; field in Pretty
160 int head = (maxLength - trimSequence.length()) * 2 / 3; in toSimpleString()
161 int tail = maxLength - trimSequence.length() - head; in toSimpleString()
162 return res.substring(0, head) + trimSequence + res.substring(res.length() - tail); in toSimpleString()
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| /dports/java/openjdk8-jre/jdk8u-jdk8u312-b07.1/langtools/src/share/classes/com/sun/tools/javac/tree/ |
| H A D | Pretty.java | 85 private final static String trimSequence = "[...]"; field in Pretty
160 int head = (maxLength - trimSequence.length()) * 2 / 3; in toSimpleString()
161 int tail = maxLength - trimSequence.length() - head; in toSimpleString()
162 return res.substring(0, head) + trimSequence + res.substring(res.length() - tail); in toSimpleString()
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| /dports/java/openjdk11/jdk11u-jdk-11.0.13-8-1/src/jdk.compiler/share/classes/com/sun/tools/javac/tree/ |
| H A D | Pretty.java | 86 private final static String trimSequence = "[...]"; field in Pretty
161 int head = (maxLength - trimSequence.length()) * 2 / 3; in toSimpleString()
162 int tail = maxLength - trimSequence.length() - head; in toSimpleString()
163 return res.substring(0, head) + trimSequence + res.substring(res.length() - tail); in toSimpleString()
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| /dports/java/openjdk13/jdk13u-jdk-13.0.10-1-1/src/jdk.compiler/share/classes/com/sun/tools/javac/tree/ |
| H A D | Pretty.java | 87 private final static String trimSequence = "[...]"; field in Pretty
162 int head = (maxLength - trimSequence.length()) * 2 / 3; in toSimpleString()
163 int tail = maxLength - trimSequence.length() - head; in toSimpleString()
164 return res.substring(0, head) + trimSequence + res.substring(res.length() - tail); in toSimpleString()
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| /dports/java/openjdk11-jre/jdk11u-jdk-11.0.13-8-1/src/jdk.compiler/share/classes/com/sun/tools/javac/tree/ |
| H A D | Pretty.java | 86 private final static String trimSequence = "[...]"; field in Pretty
161 int head = (maxLength - trimSequence.length()) * 2 / 3; in toSimpleString()
162 int tail = maxLength - trimSequence.length() - head; in toSimpleString()
163 return res.substring(0, head) + trimSequence + res.substring(res.length() - tail); in toSimpleString()
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| /dports/java/openjdk16/jdk16u-jdk-16.0.2-7-1/src/jdk.compiler/share/classes/com/sun/tools/javac/tree/ |
| H A D | Pretty.java | 86 private final static String trimSequence = "[...]"; field in Pretty
161 int head = (maxLength - trimSequence.length()) * 2 / 3; in toSimpleString()
162 int tail = maxLength - trimSequence.length() - head; in toSimpleString()
163 return res.substring(0, head) + trimSequence + res.substring(res.length() - tail); in toSimpleString()
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| /dports/java/openjdk17/jdk17u-jdk-17.0.1-12-1/src/jdk.compiler/share/classes/com/sun/tools/javac/tree/ |
| H A D | Pretty.java | 86 private static final String trimSequence = "[...]"; field in Pretty
161 int head = (maxLength - trimSequence.length()) * 2 / 3; in toSimpleString()
162 int tail = maxLength - trimSequence.length() - head; in toSimpleString()
163 return res.substring(0, head) + trimSequence + res.substring(res.length() - tail); in toSimpleString()
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| /dports/java/openjdk12/openjdk-jdk12u-jdk-12.0.2-10-4/src/jdk.compiler/share/classes/com/sun/tools/javac/tree/ |
| H A D | Pretty.java | 87 private final static String trimSequence = "[...]"; field in Pretty
162 int head = (maxLength - trimSequence.length()) * 2 / 3; in toSimpleString()
163 int tail = maxLength - trimSequence.length() - head; in toSimpleString()
164 return res.substring(0, head) + trimSequence + res.substring(res.length() - tail); in toSimpleString()
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| /dports/java/openjdk15/jdk15u-jdk-15.0.6-1-1/src/jdk.compiler/share/classes/com/sun/tools/javac/tree/ |
| H A D | Pretty.java | 86 private final static String trimSequence = "[...]"; field in Pretty
161 int head = (maxLength - trimSequence.length()) * 2 / 3; in toSimpleString()
162 int tail = maxLength - trimSequence.length() - head; in toSimpleString()
163 return res.substring(0, head) + trimSequence + res.substring(res.length() - tail); in toSimpleString()
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| /dports/java/openjdk14/jdk14u-jdk-14.0.2-12-1/src/jdk.compiler/share/classes/com/sun/tools/javac/tree/ |
| H A D | Pretty.java | 86 private final static String trimSequence = "[...]"; field in Pretty
161 int head = (maxLength - trimSequence.length()) * 2 / 3; in toSimpleString()
162 int tail = maxLength - trimSequence.length() - head; in toSimpleString()
163 return res.substring(0, head) + trimSequence + res.substring(res.length() - tail); in toSimpleString()
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