Searched refs:trim_indel_score (Results 1 – 4 of 4) sorted by relevance
286 static int trim_indel_score = -2; /* was -4 */ variable2081 trim_indel_score = atoi(check_valid_int(optarg)); in parse_command_line()2623 trim_indel_score = 0; in parse_command_line()4404 ",trim_indel_score); in print_program_usage()
147 static int trim_indel_score; variable170 trim_indel_score = trim_indel_score_in; in Pair_setup()10138 score += trim_indel_score; in Pair_trim_distances()10203 score += trim_indel_score; in Pair_trim_distances()10291 score += trim_indel_score; in Pair_trim_ends()10368 score += trim_indel_score; in Pair_trim_ends()
397 static int trim_indel_score = -2; /* was -4 */ variable7020 Pair_setup(novelsplicingp,splicing_iit,trim_indel_score, in main()
11835 trim_indel_score.12021 * gmap.c, gsnap.c, uniqscan.c: Set trim_indel_score to -4 to be consistent