Searched refs:trunc_aligned (Results 1 – 1 of 1) sorted by relevance
3841 Int4Ptr trunc_aligned; in CddConsensus() local3869 trunc_aligned = MemNew(sizeof(Int4)*bsp->length); in CddConsensus()3870 for (i=0;i<bsp->length;i++) trunc_aligned[i] = 0; in CddConsensus()3880 if (ddp) for (j=ddp->starts[0]-offset;j<ddp->starts[0]+ddp->len-offset;j++) trunc_aligned[j]=1; in CddConsensus()3882 …j=ddp->next->starts[0]-offset;j<ddp->next->starts[0]+ddp->next->len-offset;j++) trunc_aligned[j]=1; in CddConsensus()3928 if (trunc_aligned[i]==0) { in CddConsensus()3929 j=i; while(trunc_aligned[j]==0 && j < (bsp->length)) j++; in CddConsensus()4222 MemFree(trunc_aligned); in CddConsensus()