Searched refs:uColCount1 (Results 1 – 6 of 6) sorted by relevance
| /dports/biology/muscle/muscle-3.8.1551/ |
| H A D | msa2.cpp | 474 const unsigned uColCount1 = msa1.GetColCount(); in MSAAppend() local
476 const unsigned uColCountCat = uColCount1 + uColCount2; in MSAAppend()
485 msa1.SetChar(uSeqIndex, uColCount1 + uColIndex, c); in MSAAppend()
499 const unsigned uColCount1 = msa1.GetColCount(); in MSACat() local
501 const unsigned uColCountCat = uColCount1 + uColCount2; in MSACat()
507 for (unsigned uColIndex = 0; uColIndex < uColCount1; ++uColIndex) in MSACat()
522 msaCat.SetChar(uSeqIndex, uColCount1 + uColIndex, c); in MSACat()
528 msaCat.SetChar(uSeqIndex, uColCount1 + uColIndex, '-'); in MSACat()
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| H A D | refinew.cpp | 19 const unsigned uColCount1 = msa1.GetColCount(); in AppendMSA() local
22 const unsigned uColCountCat = uColCount1 + uColCount2; in AppendMSA()
34 msa1.SetChar(uSeqIndex, uColCount1 + uColIndex, c); in AppendMSA()
40 msa1.SetChar(uSeqIndex, uColCount1 + uColIndex, '-'); in AppendMSA()
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| H A D | objscore2.cpp | 313 const unsigned uColCount1 = msa1.GetColCount(); in ObjScoreDP() local
319 return ObjScoreDP_Profs(PA, PB, uColCount1, MatchScore); in ObjScoreDP()
472 const unsigned uColCount1 = msa1.GetColCount(); in ObjScoreXP() local
474 if (uColCount1 != uColCount2) in ObjScoreXP()
475 Quit("ObjScoreXP, alignment lengths differ %u %u", uColCount1, uColCount2); in ObjScoreXP()
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| /dports/biology/ugene/ugene-40.1/src/plugins_3rdparty/umuscle/src/muscle/ |
| H A D | msa2.cpp | 505 const unsigned uColCount1 = msa1.GetColCount(); in MSAAppend() local
515 msa1.SetChar(uSeqIndex, uColCount1 + uColIndex, c); in MSAAppend()
529 const unsigned uColCount1 = msa1.GetColCount(); in MSACat() local
531 const unsigned uColCountCat = uColCount1 + uColCount2; in MSACat()
537 for (unsigned uColIndex = 0; uColIndex < uColCount1; ++uColIndex) in MSACat()
552 msaCat.SetChar(uSeqIndex, uColCount1 + uColIndex, c); in MSACat()
558 msaCat.SetChar(uSeqIndex, uColCount1 + uColIndex, '-'); in MSACat()
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| H A D | objscore2.cpp | 323 const unsigned uColCount1 = msa1.GetColCount(); in ObjScoreDP() local
329 return ObjScoreDP_Profs(PA, PB, uColCount1, MatchScore); in ObjScoreDP()
490 const unsigned uColCount1 = msa1.GetColCount(); in ObjScoreXP() local
492 if (uColCount1 != uColCount2) in ObjScoreXP()
493 Quit("ObjScoreXP, alignment lengths differ %u %u", uColCount1, uColCount2); in ObjScoreXP()
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| H A D | refinew.cpp | 20 const unsigned uColCount1 = msa1.GetColCount(); in AppendMSA() local
35 msa1.SetChar(uSeqIndex, uColCount1 + uColIndex, c); in AppendMSA()
41 msa1.SetChar(uSeqIndex, uColCount1 + uColIndex, '-'); in AppendMSA()
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