Searched refs:uINSL_ST (Results 1 – 15 of 15) sorted by relevance
/dports/biology/tRNAscan-SE/tRNAscan-SE-2.0/src/ |
H A D | model.c | 242 tflags |= uINSL_ST | uINSR_ST; in RearrangeCM() 248 tflags |= uINSL_ST; in RearrangeCM() 266 tflags |= uINSL_ST; in RearrangeCM() 272 tflags |= uINSL_ST | uINSR_ST; in RearrangeCM() 344 if (fflags & uINSL_ST) in RearrangeCM() 460 if (tflags & uINSL_ST) in copy_state_transitions() 556 tflags |= uINSL_ST; in MakePCM() 574 tflags |= uINSL_ST; in MakePCM() 645 if (fflags & uINSL_ST) in MakePCM() 702 if (tflags & uINSL_ST) in copy_pstate_transitions() [all …]
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H A D | probify.c | 82 ProbifySingletEmission(cm->nd[k].il_emit, uINSL_ST, prior); in ProbifyCM() 90 ProbifySingletEmission(cm->nd[k].il_emit, uINSL_ST, prior); in ProbifyCM() 100 ProbifySingletEmission(cm->nd[k].il_emit, uINSL_ST, prior); in ProbifyCM() 104 ProbifySingletEmission(cm->nd[k].il_emit, uINSL_ST, prior); in ProbifyCM() 181 case uINSL_ST: em_prior = prior->insl_prior; break; in ProbifySingletEmission()
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H A D | emit.c | 137 case uINSL_ST: in EmitSequence() 274 case uINSL_ST: in EmitBestSequence() 429 case uINSL_ST: emit = cm->nd[nodeidx].il_emit; break; in pick_single_emit() 545 case uINSL_ST: emit = cm->nd[nodeidx].il_emit; break; in pick_best_single()
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H A D | debug.c | 28 case uINSL_ST: return "uINSL_ST"; in UstatetypeName() 201 case uINSL_ST: in PrintICM()
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H A D | modelmaking.c | 182 curr_tr = AttachTrace(curr_tr, pool, i2, curr_mtr->emitr, curr_mtr->nodeidx, uINSL_ST); in Transmogrify() 199 curr_tr = AttachTrace(curr_tr, pool, i2, curr_mtr->emitr, curr_mtr->nodeidx, uINSL_ST); in Transmogrify() 223 curr_tr = AttachTrace(curr_tr, pool, i2, curr_mtr->emitr, curr_mtr->nodeidx, uINSL_ST); in Transmogrify() 235 curr_tr = AttachTrace(curr_tr, pool, i2, curr_mtr->emitr, curr_mtr->nodeidx, uINSL_ST); in Transmogrify()
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H A D | konings.c | 78 case uINSL_ST: in Align2kh() 140 case uINSL_ST: fputs("` INSL", fp); break; in PrintAliLandscape()
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H A D | align.c | 192 case uINSL_ST: in Trace2ali() 315 case uINSL_ST: in Traces2Alignment() 382 case uINSL_ST: in Traces2Alignment()
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H A D | structs.c | 53 case uINSL_ST: return INSL_ST; in StatetypeIndex() 83 case INSL_ST: return uINSL_ST; in UniqueStatetype()
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H A D | viterbi.c | 396 case uINSL_ST: in recurse_mx() 580 case uINSL_ST: beam = amx[j][diff-1]; conni = i+1; connj = j; break; in trace_mx() 595 case uINSL_ST: sc -= icm[y].emit[symi]; break; in trace_mx()
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H A D | structs.h | 65 #define uINSL_ST (1<<4) macro
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H A D | trace.c | 328 else if (curr->type == uINSL_ST) in TraceCount() 493 case uINSL_ST: prior->insl_prior[syml] += weight; break; in TraceCountPrior() 545 else if (curr->type == uINSL_ST) in TraceScore()
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H A D | lengthdist.c | 106 case uINSL_ST: in LengthDistribution()
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H A D | dbviterbi.c | 389 case uINSL_ST: in recurse_mx()
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H A D | fast-dbviterbi.c | 402 case uINSL_ST: in recurse_mx()
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H A D | smallviterbi.c | 530 case uINSL_ST: in recurse_mx()
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