Searched refs:uSeqLength1 (Results 1 – 6 of 6) sorted by relevance
| /dports/biology/ugene/ugene-40.1/src/plugins_3rdparty/umuscle/src/muscle/ |
| H A D | fastdistkmer.cpp | 221 const unsigned uSeqLength1 = s1.Length(); in FastDistKmer() local
224 CountKmers(Seq1Letters, uSeqLength1, KmerCounts); in FastDistKmer()
234 unsigned uCommonKmerCount = CommonKmerCount(Seq1Letters, uSeqLength1, in FastDistKmer()
237 unsigned uMinLength = MIN(uSeqLength1, uSeqLength2); in FastDistKmer()
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| H A D | fastdistmafft.cpp | 168 const unsigned uSeqLength1 = seq1.Length(); in DistKmer6_6() local
169 if (uSeqLength1 < 5) in DistKmer6_6()
172 const unsigned uTupleCount = uSeqLength1 - 5; in DistKmer6_6()
179 for (unsigned n = 0; n < uSeqLength1; ++n) in DistKmer6_6()
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| H A D | fastdistnuc.cpp | 157 const unsigned uSeqLength1 = seq1.Length(); in DistKmer4_6() local
158 if (uSeqLength1 < 5) in DistKmer4_6()
161 const unsigned uTupleCount = uSeqLength1 - 5; in DistKmer4_6()
168 for (unsigned n = 0; n < uSeqLength1; ++n) in DistKmer4_6()
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| /dports/biology/muscle/muscle-3.8.1551/ |
| H A D | fastdistkmer.cpp | 213 const unsigned uSeqLength1 = s1.Length(); in FastDistKmer() local
216 CountKmers(Seq1Letters, uSeqLength1, KmerCounts); in FastDistKmer()
226 unsigned uCommonKmerCount = CommonKmerCount(Seq1Letters, uSeqLength1, in FastDistKmer()
229 unsigned uMinLength = MIN(uSeqLength1, uSeqLength2); in FastDistKmer()
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| H A D | fastdistmafft.cpp | 158 const unsigned uSeqLength1 = seq1.Length(); in DistKmer6_6() local
159 if (uSeqLength1 < 5) in DistKmer6_6()
162 const unsigned uTupleCount = uSeqLength1 - 5; in DistKmer6_6()
169 for (unsigned n = 0; n < uSeqLength1; ++n) in DistKmer6_6()
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| H A D | fastdistnuc.cpp | 143 const unsigned uSeqLength1 = seq1.Length(); in DistKmer4_6() local
144 if (uSeqLength1 < 5) in DistKmer4_6()
147 const unsigned uTupleCount = uSeqLength1 - 5; in DistKmer4_6()
154 for (unsigned n = 0; n < uSeqLength1; ++n) in DistKmer4_6()
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