Searched refs:ungapped_len (Results 1 – 1 of 1) sorted by relevance
157 const odds gaps_odds(ungapped_len, weighted_gaps); in GetScore()159 auto coverage = GetCoverage(aln, ungapped_len); in GetScore()338 num_ident = ungapped_len - num_mismatch; in s_GetIdentOdds_protSS()343 num_positives = ungapped_len - num_negatives; in s_GetIdentOdds_protSS()358 return odds(ungapped_len * identity, in s_GetIdentOdds_protSS()359 ungapped_len * (1 - identity)); in s_GetIdentOdds_protSS()415 const auto ungapped_len = aln.GetAlignLength(false); in GetIdentOdds() local419 ungapped_len - num_ident); in GetIdentOdds()423 return odds(ungapped_len - num_mismatch, in GetIdentOdds()432 ungapped_len - num_ident); in GetIdentOdds()[all …]