Searched refs:use_PLs (Results 1 – 4 of 4) sorted by relevance
/dports/biology/bio-mocha/bcftools-1.14/ |
H A D | vcfgtcheck.c | 373 if ( args->use_PLs ) in init_data() 385 args->dsg2prob[1][0] = -log(1-pow(10,-0.1*args->use_PLs)); in init_data() 386 args->dsg2prob[1][1] = -log(0.5*pow(10,-0.1*args->use_PLs)); in init_data() 387 args->dsg2prob[1][2] = -log(0.5*pow(10,-0.1*args->use_PLs)); in init_data() 389 args->dsg2prob[2][1] = -log(1-pow(10,-0.1*args->use_PLs)); in init_data() 393 args->dsg2prob[4][2] = -log(1-pow(10,-0.1*args->use_PLs)); in init_data() 596 if ( !args->use_PLs ) in process_line() 663 if ( !args->use_PLs ) in process_line() 1087 args->use_PLs = 40; in main_vcfgtcheck() 1138 args->use_PLs = strtol(optarg,&tmp,10); in main_vcfgtcheck() [all …]
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/dports/biology/bcftools/bcftools-1.14/ |
H A D | vcfgtcheck.c | 373 if ( args->use_PLs ) in init_data() 385 args->dsg2prob[1][0] = -log(1-pow(10,-0.1*args->use_PLs)); in init_data() 386 args->dsg2prob[1][1] = -log(0.5*pow(10,-0.1*args->use_PLs)); in init_data() 387 args->dsg2prob[1][2] = -log(0.5*pow(10,-0.1*args->use_PLs)); in init_data() 389 args->dsg2prob[2][1] = -log(1-pow(10,-0.1*args->use_PLs)); in init_data() 393 args->dsg2prob[4][2] = -log(1-pow(10,-0.1*args->use_PLs)); in init_data() 596 if ( !args->use_PLs ) in process_line() 663 if ( !args->use_PLs ) in process_line() 1087 args->use_PLs = 40; in main_vcfgtcheck() 1138 args->use_PLs = strtol(optarg,&tmp,10); in main_vcfgtcheck() [all …]
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/dports/biology/py-pysam/pysam-0.18.0/bcftools/ |
H A D | vcfgtcheck.c | 373 if ( args->use_PLs ) in init_data() 385 args->dsg2prob[1][0] = -log(1-pow(10,-0.1*args->use_PLs)); in init_data() 386 args->dsg2prob[1][1] = -log(0.5*pow(10,-0.1*args->use_PLs)); in init_data() 387 args->dsg2prob[1][2] = -log(0.5*pow(10,-0.1*args->use_PLs)); in init_data() 389 args->dsg2prob[2][1] = -log(1-pow(10,-0.1*args->use_PLs)); in init_data() 393 args->dsg2prob[4][2] = -log(1-pow(10,-0.1*args->use_PLs)); in init_data() 596 if ( !args->use_PLs ) in process_line() 663 if ( !args->use_PLs ) in process_line() 1087 args->use_PLs = 40; in main_vcfgtcheck() 1138 args->use_PLs = strtol(optarg,&tmp,10); in main_vcfgtcheck() [all …]
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H A D | vcfgtcheck.c.pysam.c | 375 if ( args->use_PLs ) in init_data() 387 args->dsg2prob[1][0] = -log(1-pow(10,-0.1*args->use_PLs)); in init_data() 388 args->dsg2prob[1][1] = -log(0.5*pow(10,-0.1*args->use_PLs)); in init_data() 389 args->dsg2prob[1][2] = -log(0.5*pow(10,-0.1*args->use_PLs)); in init_data() 391 args->dsg2prob[2][1] = -log(1-pow(10,-0.1*args->use_PLs)); in init_data() 395 args->dsg2prob[4][2] = -log(1-pow(10,-0.1*args->use_PLs)); in init_data() 598 if ( !args->use_PLs ) in process_line() 665 if ( !args->use_PLs ) in process_line() 1089 args->use_PLs = 40; in main_vcfgtcheck() 1140 args->use_PLs = strtol(optarg,&tmp,10); in main_vcfgtcheck() [all …]
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