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Searched refs:use_PLs (Results 1 – 4 of 4) sorted by relevance

/dports/biology/bio-mocha/bcftools-1.14/
H A Dvcfgtcheck.c373 if ( args->use_PLs ) in init_data()
385 args->dsg2prob[1][0] = -log(1-pow(10,-0.1*args->use_PLs)); in init_data()
386 args->dsg2prob[1][1] = -log(0.5*pow(10,-0.1*args->use_PLs)); in init_data()
387 args->dsg2prob[1][2] = -log(0.5*pow(10,-0.1*args->use_PLs)); in init_data()
389 args->dsg2prob[2][1] = -log(1-pow(10,-0.1*args->use_PLs)); in init_data()
393 args->dsg2prob[4][2] = -log(1-pow(10,-0.1*args->use_PLs)); in init_data()
596 if ( !args->use_PLs ) in process_line()
663 if ( !args->use_PLs ) in process_line()
1087 args->use_PLs = 40; in main_vcfgtcheck()
1138 args->use_PLs = strtol(optarg,&tmp,10); in main_vcfgtcheck()
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/dports/biology/bcftools/bcftools-1.14/
H A Dvcfgtcheck.c373 if ( args->use_PLs ) in init_data()
385 args->dsg2prob[1][0] = -log(1-pow(10,-0.1*args->use_PLs)); in init_data()
386 args->dsg2prob[1][1] = -log(0.5*pow(10,-0.1*args->use_PLs)); in init_data()
387 args->dsg2prob[1][2] = -log(0.5*pow(10,-0.1*args->use_PLs)); in init_data()
389 args->dsg2prob[2][1] = -log(1-pow(10,-0.1*args->use_PLs)); in init_data()
393 args->dsg2prob[4][2] = -log(1-pow(10,-0.1*args->use_PLs)); in init_data()
596 if ( !args->use_PLs ) in process_line()
663 if ( !args->use_PLs ) in process_line()
1087 args->use_PLs = 40; in main_vcfgtcheck()
1138 args->use_PLs = strtol(optarg,&tmp,10); in main_vcfgtcheck()
[all …]
/dports/biology/py-pysam/pysam-0.18.0/bcftools/
H A Dvcfgtcheck.c373 if ( args->use_PLs ) in init_data()
385 args->dsg2prob[1][0] = -log(1-pow(10,-0.1*args->use_PLs)); in init_data()
386 args->dsg2prob[1][1] = -log(0.5*pow(10,-0.1*args->use_PLs)); in init_data()
387 args->dsg2prob[1][2] = -log(0.5*pow(10,-0.1*args->use_PLs)); in init_data()
389 args->dsg2prob[2][1] = -log(1-pow(10,-0.1*args->use_PLs)); in init_data()
393 args->dsg2prob[4][2] = -log(1-pow(10,-0.1*args->use_PLs)); in init_data()
596 if ( !args->use_PLs ) in process_line()
663 if ( !args->use_PLs ) in process_line()
1087 args->use_PLs = 40; in main_vcfgtcheck()
1138 args->use_PLs = strtol(optarg,&tmp,10); in main_vcfgtcheck()
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H A Dvcfgtcheck.c.pysam.c375 if ( args->use_PLs ) in init_data()
387 args->dsg2prob[1][0] = -log(1-pow(10,-0.1*args->use_PLs)); in init_data()
388 args->dsg2prob[1][1] = -log(0.5*pow(10,-0.1*args->use_PLs)); in init_data()
389 args->dsg2prob[1][2] = -log(0.5*pow(10,-0.1*args->use_PLs)); in init_data()
391 args->dsg2prob[2][1] = -log(1-pow(10,-0.1*args->use_PLs)); in init_data()
395 args->dsg2prob[4][2] = -log(1-pow(10,-0.1*args->use_PLs)); in init_data()
598 if ( !args->use_PLs ) in process_line()
665 if ( !args->use_PLs ) in process_line()
1089 args->use_PLs = 40; in main_vcfgtcheck()
1140 args->use_PLs = strtol(optarg,&tmp,10); in main_vcfgtcheck()
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