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Searched refs:vGapExtend (Results 1 – 3 of 3) sorted by relevance

/dports/biology/fasta3/fasta-36.3.8/src/
H A Dglocal_sse2.c73 __m128i vGapExtend; in glocal_sse2_word() local
104 vGapExtend = _mm_insert_epi16 (vGapExtend, gapExtend, 0); in glocal_sse2_word()
105 vGapExtend = _mm_shufflelo_epi16 (vGapExtend, 0); in glocal_sse2_word()
106 vGapExtend = _mm_shuffle_epi32 (vGapExtend, 0); in glocal_sse2_word()
118 vGapExtend = _mm_srli_si128 (vGapExtend, 14); in glocal_sse2_word()
147 vF = _mm_adds_epi16 (vF, vGapExtend); in glocal_sse2_word()
348 __m128i vGapExtend; in glocal_sse2_byte() local
389 vGapExtend = _mm_insert_epi16 (vGapExtend, dup, 0); in glocal_sse2_byte()
390 vGapExtend = _mm_shufflelo_epi16 (vGapExtend, 0); in glocal_sse2_byte()
391 vGapExtend = _mm_shuffle_epi32 (vGapExtend, 0); in glocal_sse2_byte()
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H A Dglobal_sse2.c70 __m128i vGapExtend; in global_sse2_word() local
97 vGapExtend = _mm_setzero_si128(); /* transfered from Apple Devel smith_waterman_sse2.c fix */ in global_sse2_word()
98 vGapExtend = _mm_insert_epi16 (vGapExtend, gapExtend, 0); in global_sse2_word()
99 vGapExtend = _mm_shufflelo_epi16 (vGapExtend, 0); in global_sse2_word()
100 vGapExtend = _mm_shuffle_epi32 (vGapExtend, 0); in global_sse2_word()
319 __m128i vGapExtend; in global_sse2_byte() local
355 vGapExtend = _mm_setzero_si128(); /* initialize cf Apple Devel smith_waterman_sse2.c */ in global_sse2_byte()
356 vGapExtend = _mm_insert_epi16 (vGapExtend, dup, 0); in global_sse2_byte()
357 vGapExtend = _mm_shufflelo_epi16 (vGapExtend, 0); in global_sse2_byte()
358 vGapExtend = _mm_shuffle_epi32 (vGapExtend, 0); in global_sse2_byte()
/dports/biology/ugene/ugene-40.1/src/plugins/smith_waterman/src/
H A DSmithWatermanAlgorithmSSE2.cpp1037 __m128i vGapExtend = _mm_set1_epi32(0); in calculateMatrixSSE2() local
1051 vGapExtend = _mm_insert_epi16(vGapExtend, gapExtend, 0); in calculateMatrixSSE2()
1052 vGapExtend = _mm_shufflelo_epi16(vGapExtend, 0); in calculateMatrixSSE2()
1053 vGapExtend = _mm_shuffle_epi32(vGapExtend, 0); in calculateMatrixSSE2()
1112 vE = _mm_subs_epi16(vE, vGapExtend); in calculateMatrixSSE2()
1116 vF = _mm_subs_epi16(vF, vGapExtend); in calculateMatrixSSE2()
1157 vF = _mm_subs_epi16(vF, vGapExtend); in calculateMatrixSSE2()