Searched refs:v_alleles (Results 1 – 9 of 9) sorted by relevance
51 v_alleles.push_back(tmp_alleles[i]); in SNPGenotypingRecord()56 if (vtype==VT_SNP && v_alleles.size()==2) in SNPGenotypingRecord()464 if (v_alleles.size()==2) in process_read()515 allele = (aug_alt[i].at(0) == v_alleles[1].at(0)) ? 1 : -1; in process_read()552 else if (v_alleles.size()>2) //multiallelic in process_read()603 allele = (aug_alt[i].at(0) == v_alleles[1].at(0)) ? 1 : -1; in process_read()
46 v_alleles.push_back(tmp_alleles[i]); in VNTRGenotypingRecord()463 if (v_alleles.size()==2) in process_read()514 allele = (aug_alt[i].at(0) == v_alleles[1].at(0)) ? 1 : -1; in process_read()558 if (v_alleles.size()==2) in process_read()
55 std::vector<std::string> v_alleles; variable
60 std::vector<std::string> v_alleles; variable
77 std::vector<std::string> v_alleles; variable
78 std::vector<std::string> v_alleles; variable
45 v_alleles.push_back(tmp_alleles[i]); in ComplexGenotypingRecord()50 if (vtype==VT_SNP && v_alleles.size()==2) in ComplexGenotypingRecord()65 else if (vtype==VT_INDEL && v_alleles.size()==2) in ComplexGenotypingRecord()513 if (v_alleles.size()==2) in process_read()
102 std::vector<std::string> v_alleles; variable
45 v_alleles.push_back(tmp_alleles[i]); in IndelGenotypingRecord()477 if (v_alleles.size()==2) in process_read()