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Searched refs:vec_rs (Results 1 – 4 of 4) sorted by relevance

/dports/biology/gemma/GEMMA-0.98.3/src/
H A Dbslmmdap.h81 void WriteResult(const vector<string> &vec_rs, const gsl_matrix *Hyper,
95 const vector<string> &vec_rs, const vector<double> &vec_sa2,
103 void ReadFile_bf(const string &file_bf, vector<string> &vec_rs,
105 void ReadFile_cat(const string &file_cat, const vector<string> &vec_rs,
H A Dbslmmdap.cpp142 vec_rs.clear(); in ReadFile_bf()
165 vec_rs.push_back(rs); in ReadFile_bf()
286 Ac = gsl_matrix_alloc(vec_rs.size(), kc); in ReadFile_cat()
287 for (size_t i = 0; i < vec_rs.size(); i++) { in ReadFile_cat()
288 if (mapRS2catc.count(vec_rs[i]) != 0) { in ReadFile_cat()
301 Ad = gsl_matrix_int_alloc(vec_rs.size(), kd); in ReadFile_cat()
303 for (size_t i = 0; i < vec_rs.size(); i++) { in ReadFile_cat()
304 if (mapRS2catd.count(vec_rs[i]) != 0) { in ReadFile_cat()
460 for (size_t i = 0; i < vec_rs.size(); ++i) { in WriteResult()
692 size_t n_grid = wab.size(), ns_test = vec_rs.size(); in DAP_EstimateHyper()
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H A Dgemma.cpp3068 vector<string> vec_rs; in BatchRun() local
3074 ReadFile_bf(cPar.file_bf, vec_rs, BF); in BatchRun()
3076 cPar.ns_test = vec_rs.size(); in BatchRun()
3087 ReadFile_cat(cPar.file_cat, vec_rs, Ac, Ad, dlevel, kc, kd); in BatchRun()
3094 cout << "## number of analyzed SNPs/var = " << vec_rs.size() << endl; in BatchRun()
3109 cBslmmDap.DAP_EstimateHyper(kc, kd, vec_rs, vec_sa2, vec_sb2, wab, BF, Ac, in BatchRun()
H A Dvc.cpp639 vector<string> &vec_rs, vector<size_t> &vec_n, in ReadFile_cor() argument
644 vec_rs.clear(); in ReadFile_cor()
742 vec_rs.push_back(rs); in ReadFile_cor()
1001 void ReadFile_cor(const string &file_cor, const vector<string> &vec_rs, in ReadFile_cor() argument
1145 rs2 = vec_rs[ns_total + n_nb + 1]; in ReadFile_cor()