| /dports/biology/bcftools/bcftools-1.14/ |
| H A D | HMM.c | 48 double *vprob, *vprob_tmp; // viterbi probs [nstates] member
235 if ( !hmm->vprob ) in hmm_run_viterbi()
237 hmm->vprob = (double*) malloc(sizeof(double)*hmm->nstates); in hmm_run_viterbi()
243 memcpy(hmm->vprob, hmm->state.vit_prob, sizeof(*hmm->state.vit_prob)*nstates); in hmm_run_viterbi()
264 double pval = hmm->vprob[k] * MAT(hmm->curr_tprob,hmm->nstates,j,k); in hmm_run_viterbi()
272 double *tmp = hmm->vprob; hmm->vprob = hmm->vprob_tmp; hmm->vprob_tmp = tmp; in hmm_run_viterbi()
275 memcpy(hmm->snapshot->vit_prob, hmm->vprob, sizeof(*hmm->vprob)*nstates); in hmm_run_viterbi()
281 if ( hmm->vprob[iptr] < hmm->vprob[i] ) iptr = i; in hmm_run_viterbi()
498 free(hmm->vprob); in hmm_destroy()
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| /dports/biology/bio-mocha/bcftools-1.14/ |
| H A D | HMM.c | 48 double *vprob, *vprob_tmp; // viterbi probs [nstates] member
235 if ( !hmm->vprob ) in hmm_run_viterbi()
237 hmm->vprob = (double*) malloc(sizeof(double)*hmm->nstates); in hmm_run_viterbi()
243 memcpy(hmm->vprob, hmm->state.vit_prob, sizeof(*hmm->state.vit_prob)*nstates); in hmm_run_viterbi()
264 double pval = hmm->vprob[k] * MAT(hmm->curr_tprob,hmm->nstates,j,k); in hmm_run_viterbi()
272 double *tmp = hmm->vprob; hmm->vprob = hmm->vprob_tmp; hmm->vprob_tmp = tmp; in hmm_run_viterbi()
275 memcpy(hmm->snapshot->vit_prob, hmm->vprob, sizeof(*hmm->vprob)*nstates); in hmm_run_viterbi()
281 if ( hmm->vprob[iptr] < hmm->vprob[i] ) iptr = i; in hmm_run_viterbi()
498 free(hmm->vprob); in hmm_destroy()
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| /dports/biology/py-pysam/pysam-0.18.0/bcftools/ |
| H A D | HMM.c | 48 double *vprob, *vprob_tmp; // viterbi probs [nstates] member
235 if ( !hmm->vprob ) in hmm_run_viterbi()
237 hmm->vprob = (double*) malloc(sizeof(double)*hmm->nstates); in hmm_run_viterbi()
243 memcpy(hmm->vprob, hmm->state.vit_prob, sizeof(*hmm->state.vit_prob)*nstates); in hmm_run_viterbi()
264 double pval = hmm->vprob[k] * MAT(hmm->curr_tprob,hmm->nstates,j,k); in hmm_run_viterbi()
272 double *tmp = hmm->vprob; hmm->vprob = hmm->vprob_tmp; hmm->vprob_tmp = tmp; in hmm_run_viterbi()
275 memcpy(hmm->snapshot->vit_prob, hmm->vprob, sizeof(*hmm->vprob)*nstates); in hmm_run_viterbi()
281 if ( hmm->vprob[iptr] < hmm->vprob[i] ) iptr = i; in hmm_run_viterbi()
498 free(hmm->vprob); in hmm_destroy()
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| H A D | HMM.c.pysam.c | 50 double *vprob, *vprob_tmp; // viterbi probs [nstates] member
237 if ( !hmm->vprob ) in hmm_run_viterbi()
239 hmm->vprob = (double*) malloc(sizeof(double)*hmm->nstates); in hmm_run_viterbi()
245 memcpy(hmm->vprob, hmm->state.vit_prob, sizeof(*hmm->state.vit_prob)*nstates); in hmm_run_viterbi()
266 double pval = hmm->vprob[k] * MAT(hmm->curr_tprob,hmm->nstates,j,k); in hmm_run_viterbi()
274 double *tmp = hmm->vprob; hmm->vprob = hmm->vprob_tmp; hmm->vprob_tmp = tmp; in hmm_run_viterbi()
277 memcpy(hmm->snapshot->vit_prob, hmm->vprob, sizeof(*hmm->vprob)*nstates); in hmm_run_viterbi()
283 if ( hmm->vprob[iptr] < hmm->vprob[i] ) iptr = i; in hmm_run_viterbi()
500 free(hmm->vprob); in hmm_destroy()
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| /dports/games/dungeon/dungeon-3.2_1/ |
| H A D | DEMONS.C | 49 if (vill_1.vprob[i - 1] == 0 || ! prob_(vill_1.vprob[i - 1], in fightd_()
50 vill_1.vprob[i - 1])) { in fightd_()
55 vill_1.vprob[i - 1] = 0; in fightd_()
67 vill_1.vprob[i - 1] += 10; in fightd_()
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| H A D | DINIT.C | 255 vill_1.vprob[i - 1] = 0; in init_()
399 rdpartialints(vill_1.vlnt, &vill_1.vprob[0], indxfile); in init_()
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| H A D | DVERB2.C | 85 do_uio(4, &vill_1.vprob[0], sizeof(integer)); in savegm_()
177 do_uio(4, &vill_1.vprob[0], sizeof(integer)); in rstrgm_()
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| H A D | VARS.H | 291 integer vlnt, villns[4], vprob[4], vopps[4], vbest[4], vmelee[4]; member
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| /dports/science/dakota/dakota-6.13.0-release-public.src-UI/packages/external/trilinos/packages/rol/src/sol/sampler/SROM/ |
| H A D | ROL_MomentObjective.hpp | 107 const ProbabilityVector<Real> &vprob, in momentHessVec() argument
118 vpt = (*vatom.getAtom(k))[dim]; vwt = vprob.getProbability(k); in momentHessVec()
220 const ProbabilityVector<Real> &vprob = *(ev.getProbabilityVector()); in hessVec() local
236 d,(Real)data[m].first,data[m].second,prob,atom,vprob,vatom); in hessVec()
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| H A D | ROL_CDFObjective.hpp | 150 const ProbabilityVector<Real> &vprob, in hessVecCDF() argument
161 vpt = (*vatom.getAtom(k))[dim]; vwt = vprob.getProbability(k); in hessVecCDF()
255 const ProbabilityVector<Real> &vprob = *(ev.getProbabilityVector()); in hessVec() local
273 val = hessVecCDF(hvxx,hvxp,hvpx,gradx,gradp,sumx,sump,d,pt,prob,atom,vprob,vatom); in hessVec()
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| /dports/games/dungeon/dungeon-3.2_1/dungeon-gdt/ |
| H A D | dungeon.c | 184 vill_1.vprob[i__ - 1] = 0; in dungeon_main()
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| H A D | timefnc.c | 1078 i__2 = (vill_1.vprob[i__ - 1] + 100) / 2; in fightd_()
1079 if (vill_1.vprob[i__ - 1] == 0 || ! prob_(&vill_1.vprob[i__ - 1], & in fightd_()
1086 vill_1.vprob[i__ - 1] = 0; in fightd_()
1098 vill_1.vprob[i__ - 1] += 10; in fightd_()
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| H A D | gdt.c | 488 vill_1.vprob[i - 1], in gdt_()
508 dest_array = &vill_1.vprob[0]; in gdt_()
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| H A D | game.c | 514 f_get_ints(datafile, &vill_1.vprob[0], 4); in initfl_()
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| H A D | commons.h | 91 integer vlnt, villns[4], vprob[4], vopps[4], vbest[4], vmelee[4]; member
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| H A D | verbs.c | 3551 f_put_ints(savefile, &vill_1.vprob[0], 4); in savegm_()
3660 f_get_ints(savefile, &vill_1.vprob[0], 4); in rstrgm_()
|