Searched refs:whole_slp (Results 1 – 5 of 5) sorted by relevance
/dports/biology/ncbi-toolkit/ncbi/api/ |
H A D | sequtil.c | 9672 whole_slp = in AdjustOffSetsInSeqAlign() 9684 whole_slp = ValNodeFree(whole_slp); in AdjustOffSetsInSeqAlign() 9689 whole_slp = in AdjustOffSetsInSeqAlign() 9701 whole_slp = ValNodeFree(whole_slp); in AdjustOffSetsInSeqAlign() 9714 whole_slp = in AdjustOffSetsInSeqAlign() 9726 whole_slp = ValNodeFree(whole_slp); in AdjustOffSetsInSeqAlign() 9731 whole_slp = in AdjustOffSetsInSeqAlign() 9745 whole_slp = ValNodeFree(whole_slp); in AdjustOffSetsInSeqAlign() 9764 whole_slp = in AdjustOffSetsInSeqAlign() 9779 whole_slp = ValNodeFree(whole_slp); in AdjustOffSetsInSeqAlign() [all …]
|
/dports/biology/ncbi-toolkit/ncbi/desktop/ |
H A D | ingengraph.c | 710 SeqLocPtr slp=NULL, whole_slp=NULL; in Ing_PopOverviewPage() local 726 whole_slp=SeqLocIntNew(left, right, Seq_strand_plus, (SeqIdPtr)bsp->id); in Ing_PopOverviewPage() 783 … SeqMgrExploreFeatures (bsp, (Pointer) &pf,Ing_CollectFeatures2, whole_slp, NULL,IngfeatDefFilter); in Ing_PopOverviewPage() 889 SeqLocFree(whole_slp); in Ing_PopOverviewPage()
|
/dports/biology/ncbi-toolkit/ncbi/network/blast3/client/ |
H A D | netblap3.c | 2329 SeqLocPtr whole_slp; in BlastSeqLocNetCore() local 2401 whole_slp = NULL; in BlastSeqLocNetCore() 2403 ValNodeAddPointer(&whole_slp, SEQLOC_WHOLE, SeqIdDup(SeqIdFindBest(bsp->id, SEQID_GI))); in BlastSeqLocNetCore() 2405 offset = GetOffsetInLoc(slp, whole_slp, SEQLOC_START); in BlastSeqLocNetCore()
|
/dports/biology/ncbi-toolkit/ncbi/tools/ |
H A D | mblast.c | 834 SeqLocPtr whole_slp=NULL, slp_var; in BioseqMegaBlastEngineByLoc() local 926 ValNodeAddPointer(&whole_slp, SEQLOC_WHOLE, in BioseqMegaBlastEngineByLoc() 928 if (SeqLocAinB(whole_slp, slp_var) != 0) in BioseqMegaBlastEngineByLoc() 930 ValNodeFree(whole_slp); in BioseqMegaBlastEngineByLoc()
|
H A D | blastutl.c | 5009 SeqLocPtr whole_slp=NULL; in BioseqBlastEngineByLocWithCallbackMult() local 5221 ValNodeAddPointer(&whole_slp, SEQLOC_WHOLE, SeqIdFindBest(SeqLocId(slp), SEQID_GI)); in BioseqBlastEngineByLocWithCallbackMult() 5222 if (SeqLocAinB(whole_slp, slp) != 0) { in BioseqBlastEngineByLocWithCallbackMult() 5225 ValNodeFree(whole_slp); in BioseqBlastEngineByLocWithCallbackMult() 5322 SeqLocPtr seqloc, whole_slp=NULL; in BioseqHitRangeEngineByLoc() local 5368 ValNodeAddPointer(&whole_slp, SEQLOC_WHOLE, SeqIdFindBest(SeqLocId(slp), SEQID_GI)); in BioseqHitRangeEngineByLoc() 5369 bhrp->base_offset = GetOffsetInLoc(slp, whole_slp, SEQLOC_START); in BioseqHitRangeEngineByLoc() 5370 ValNodeFree(whole_slp); in BioseqHitRangeEngineByLoc()
|