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Searched refs:whole_slp (Results 1 – 5 of 5) sorted by relevance

/dports/biology/ncbi-toolkit/ncbi/api/
H A Dsequtil.c9672 whole_slp = in AdjustOffSetsInSeqAlign()
9684 whole_slp = ValNodeFree(whole_slp); in AdjustOffSetsInSeqAlign()
9689 whole_slp = in AdjustOffSetsInSeqAlign()
9701 whole_slp = ValNodeFree(whole_slp); in AdjustOffSetsInSeqAlign()
9714 whole_slp = in AdjustOffSetsInSeqAlign()
9726 whole_slp = ValNodeFree(whole_slp); in AdjustOffSetsInSeqAlign()
9731 whole_slp = in AdjustOffSetsInSeqAlign()
9745 whole_slp = ValNodeFree(whole_slp); in AdjustOffSetsInSeqAlign()
9764 whole_slp = in AdjustOffSetsInSeqAlign()
9779 whole_slp = ValNodeFree(whole_slp); in AdjustOffSetsInSeqAlign()
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/dports/biology/ncbi-toolkit/ncbi/desktop/
H A Dingengraph.c710 SeqLocPtr slp=NULL, whole_slp=NULL; in Ing_PopOverviewPage() local
726 whole_slp=SeqLocIntNew(left, right, Seq_strand_plus, (SeqIdPtr)bsp->id); in Ing_PopOverviewPage()
783 … SeqMgrExploreFeatures (bsp, (Pointer) &pf,Ing_CollectFeatures2, whole_slp, NULL,IngfeatDefFilter); in Ing_PopOverviewPage()
889 SeqLocFree(whole_slp); in Ing_PopOverviewPage()
/dports/biology/ncbi-toolkit/ncbi/network/blast3/client/
H A Dnetblap3.c2329 SeqLocPtr whole_slp; in BlastSeqLocNetCore() local
2401 whole_slp = NULL; in BlastSeqLocNetCore()
2403 ValNodeAddPointer(&whole_slp, SEQLOC_WHOLE, SeqIdDup(SeqIdFindBest(bsp->id, SEQID_GI))); in BlastSeqLocNetCore()
2405 offset = GetOffsetInLoc(slp, whole_slp, SEQLOC_START); in BlastSeqLocNetCore()
/dports/biology/ncbi-toolkit/ncbi/tools/
H A Dmblast.c834 SeqLocPtr whole_slp=NULL, slp_var; in BioseqMegaBlastEngineByLoc() local
926 ValNodeAddPointer(&whole_slp, SEQLOC_WHOLE, in BioseqMegaBlastEngineByLoc()
928 if (SeqLocAinB(whole_slp, slp_var) != 0) in BioseqMegaBlastEngineByLoc()
930 ValNodeFree(whole_slp); in BioseqMegaBlastEngineByLoc()
H A Dblastutl.c5009 SeqLocPtr whole_slp=NULL; in BioseqBlastEngineByLocWithCallbackMult() local
5221 ValNodeAddPointer(&whole_slp, SEQLOC_WHOLE, SeqIdFindBest(SeqLocId(slp), SEQID_GI)); in BioseqBlastEngineByLocWithCallbackMult()
5222 if (SeqLocAinB(whole_slp, slp) != 0) { in BioseqBlastEngineByLocWithCallbackMult()
5225 ValNodeFree(whole_slp); in BioseqBlastEngineByLocWithCallbackMult()
5322 SeqLocPtr seqloc, whole_slp=NULL; in BioseqHitRangeEngineByLoc() local
5368 ValNodeAddPointer(&whole_slp, SEQLOC_WHOLE, SeqIdFindBest(SeqLocId(slp), SEQID_GI)); in BioseqHitRangeEngineByLoc()
5369 bhrp->base_offset = GetOffsetInLoc(slp, whole_slp, SEQLOC_START); in BioseqHitRangeEngineByLoc()
5370 ValNodeFree(whole_slp); in BioseqHitRangeEngineByLoc()