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Searched refs:window_cm (Results 1 – 10 of 10) sorted by relevance

/dports/biology/gemma/GEMMA-0.98.3/src/
H A Dvarcov.cpp58 window_cm = cPar.window_cm; in CopyFromParam()
176 (snpInfo_sort[t].cM == -9 && window_cm != 0) || in CalcNB()
198 (snpInfo_sort[t2].cM - snpInfo_sort[t].cM < window_cm || in CalcNB()
199 window_cm == 0) && in CalcNB()
H A Dvarcov.h47 double window_cm; variable
H A Dvc.h75 double window_cm, window_bp, window_ns; variable
H A Dparam.h222 double window_cm; variable
H A Dparam.cpp104 randseed(-1), window_cm(0), window_bp(0), window_ns(0), n_block(200), in PARAM()
621 if (window_cm < 0) { in CheckParam()
623 << "current values = " << window_cm << endl; in CheckParam()
627 if (window_cm == 0 && window_bp == 0 && window_ns == 0) { in CheckParam()
H A Dvc.cpp81 window_cm = cPar.window_cm; in CopyFromParam()
1008 const double &window_cm, const double &window_bp, in ReadFile_cor() argument
1163 if (window_cm != 0 && d_cm1 != 0 && d_cm2 != 0) { in ReadFile_cor()
1165 min((int)floor(d_cm / window_cm * bin_size), (int)bin_size); in ReadFile_cor()
H A Dgemma.cpp1582 cPar.window_cm = atof(str.c_str()); in Assign()
/dports/biology/plink/plink-ng-79b2df8c/1.9/
H A Dplink_ld.h54 double window_cm; member
H A Dplink_ld.c37 ldip->window_cm = -1; in ld_epi_init()
5262 double window_cm = ldip->window_cm; in ld_report_dprime() local
5460 …arker_exclude, marker_uidx1_tmp, chrom_last, window_size_m1, window_bp, window_cm, &window_lead_ct… in ld_report_dprime()
5485 cur_marker_cm = marker_cms[marker_uidx1_tmp] - window_cm; in ld_report_dprime()
5509 cur_marker_cm = marker_cms[marker_uidx1_tmp] + window_cm; in ld_report_dprime()
5510 …marker_pos[marker_uidx2_fwd2] <= cur_marker_pos) && (marker_cms[marker_uidx2_fwd2] <= window_cm)) { in ld_report_dprime()
5698 double window_cm = ldip->window_cm; in ld_report_regular() local
6006 …arker_exclude, marker_uidx1_tmp, chrom_last, window_size_m1, window_bp, window_cm, &window_lead_ct… in ld_report_regular()
6031 cur_marker_cm = marker_cms[marker_uidx1_tmp] - window_cm; in ld_report_regular()
6055 cur_marker_cm = marker_cms[marker_uidx1_tmp] + window_cm; in ld_report_regular()
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H A Dplink.c301 …if ((calculation_type & CALC_LD) && (!(ldip->modifier & LD_MATRIX_SHAPEMASK)) && (ldip->window_cm … in are_marker_cms_needed()
1718 if ((map_is_unsorted & UNSORTED_CM) && (ldip->window_cm != -1)) { in plink()
8214 ld_info.window_cm = dxx * (1 + SMALL_EPSILON); in main()