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/dports/biology/ugene/ugene-40.1/data/cmdline/
H A Dpwm-build.uwl15 wmatrix-build {
16 type:wmatrix-build;
19 wmatrix-write {
20 type:wmatrix-write;
27 wmatrix-build.out-wmatrix->wmatrix-write.in-wmatrix
31 wmatrix-build.wmatrix->wmatrix-write.in-wmatrix.wmatrix
39 wmatrix-build.matrix-type {
47 wmatrix-write.url-out {
59 wmatrix-build {
66 wmatrix-write {
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H A Dpwm-search.uwl15 wmatrix-read {
16 type:wmatrix-read;
19 wmatrix-search {
20 type:wmatrix-search;
33 wmatrix-read.out-wmatrix->wmatrix-search.in-wmatrix
38 wmatrix-read.wmatrix->wmatrix-search.in-wmatrix.wmatrix
49 wmatrix-read.url-in {
61 wmatrix-search.strand {
81 wmatrix-read {
87 wmatrix-search {
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H A Dpfm-search.uwl19 fmatrix-to-wmatrix {
20 type:fmatrix-to-wmatrix;
23 wmatrix-search {
24 type:wmatrix-search;
38 fmatrix-to-wmatrix.out-wmatrix->wmatrix-search.in-wmatrix
44 fmatrix-to-wmatrix.wmatrix->wmatrix-search.in-wmatrix.wmatrix
67 wmatrix-search.min-score {
75 wmatrix-search.strand {
95 fmatrix-to-wmatrix {
108 wmatrix-search {
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/dports/biology/ugene/ugene-40.1/data/workflow_samples/Data merging/
H A Dtfbs.uwl31 wmatrix-search {
32 type:wmatrix-search;
40 wmatrix-read {
41 type:wmatrix-read;
51 wmatrix-read.out-wmatrix->wmatrix-search.in-wmatrix
63 wmatrix-read.wmatrix->wmatrix-search.in-wmatrix.wmatrix
99 wmatrix-search {
105 in-wmatrix.angle:27.613;
115 wmatrix-read {
120 out-wmatrix.angle:323.393;
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/dports/science/nwchem/nwchem-7b21660b82ebd85ef659f6fba7e1e73433b0bd0a/src/nwpw/nwpwlib/utilities/paw_utilities/
H A Dnwpw_compcharge2.F99 real*8 wmatrix(nprj,nprj,2) local
109 call dcopy(2*nprj*nprj,0.0d0,0,wmatrix,1)
113 wmatrix(j,j,ms) = wmatrix(j,j,ms) + sw1(n,j)*sw1(n,j)
123 wmatrix(i,j,ms) = wmatrix(i,j,ms) + tmp
124 wmatrix(j,i,ms) = wmatrix(j,i,ms) + tmp
138 real*8 function nwpw_compcharge_Watom1_sub(ispin,nprj,wmatrix,
145 real*8 wmatrix(nprj,nprj,2)
179 real*8 function nwpw_compcharge_Watom2_sub(ispin,nprj,wmatrix,
186 real*8 wmatrix(nprj,nprj,2)
221 real*8 wmatrix(nprj,nprj,2)
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H A Dnwpw_compcharge.F943 real*8 wmatrix(nprj,nprj,ispin) local
997 > + coeff*wmatrix(iprj,jprj,ms)
5092 real*8 wmatrix(nprj,nprj,ispin)
5136 real*8 wmatrix(nprj,nprj,ispin)
5162 w = wmatrix(iprj,jprj,1) + wmatrix(iprj,jprj,ispin)
5163 w1 = wmatrix(iprj1,jprj1,1) + wmatrix(iprj1,jprj1,ispin)
5190 > wmatrix)
5194 real*8 wmatrix(nprj,nprj,ispin)
5242 real*8 wmatrix(nprj,nprj,ispin)
5269 w = wmatrix(iprj,jprj,1) + wmatrix(iprj,jprj,ispin)
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/dports/science/nwchem-data/nwchem-7.0.2-release/src/nwpw/nwpwlib/utilities/paw_utilities/
H A Dnwpw_compcharge2.F99 real*8 wmatrix(nprj,nprj,2) local
109 call dcopy(2*nprj*nprj,0.0d0,0,wmatrix,1)
113 wmatrix(j,j,ms) = wmatrix(j,j,ms) + sw1(n,j)*sw1(n,j)
123 wmatrix(i,j,ms) = wmatrix(i,j,ms) + tmp
124 wmatrix(j,i,ms) = wmatrix(j,i,ms) + tmp
138 real*8 function nwpw_compcharge_Watom1_sub(ispin,nprj,wmatrix,
145 real*8 wmatrix(nprj,nprj,2)
179 real*8 function nwpw_compcharge_Watom2_sub(ispin,nprj,wmatrix,
186 real*8 wmatrix(nprj,nprj,2)
221 real*8 wmatrix(nprj,nprj,2)
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H A Dnwpw_compcharge.F943 real*8 wmatrix(nprj,nprj,ispin) local
997 > + coeff*wmatrix(iprj,jprj,ms)
4910 real*8 wmatrix(nprj,nprj,ispin)
4954 real*8 wmatrix(nprj,nprj,ispin)
4980 w = wmatrix(iprj,jprj,1) + wmatrix(iprj,jprj,ispin)
4981 w1 = wmatrix(iprj1,jprj1,1) + wmatrix(iprj1,jprj1,ispin)
5008 > wmatrix)
5012 real*8 wmatrix(nprj,nprj,ispin)
5060 real*8 wmatrix(nprj,nprj,ispin)
5087 w = wmatrix(iprj,jprj,1) + wmatrix(iprj,jprj,ispin)
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/dports/finance/R-cran-gmm/gmm/R/
H A DFinRes.R64 } else if ( (is.null(P$weightsMatrix)) & (P$wmatrix != "ident") ) {
100 if(P$wmatrix == "ident")
113 z$infWmatrix <- P$wmatrix
115 if (P$wmatrix=="ident")
143 } else if ( (is.null(P$weightsMatrix)) & (P$wmatrix != "ident") ) {
175 if(P$wmatrix == "ident")
190 z$infWmatrix <- P$wmatrix
H A DsysGmm.R17 … res <- sysGmm(g, h, wmatrix = "optimal", vcov = "CondHom", commonCoef=commonCoef, data=data)
63 sysGmm <- function(g, h, wmatrix = c("optimal","ident"), argument
72 wmatrix <- match.arg(wmatrix)
78 wmatrix <- "optimal"
81 all_args<-list(data = data, g = g, h = h, wmatrix = wmatrix, vcov = vcov, kernel = kernel, nameattr
H A Dgmm.R14 gmm <- function(g,x,t0=NULL,gradv=NULL, type=c("twoStep","cue","iterative"), wmatrix = c("optimal",… argument
23 wmatrix <- match.arg(wmatrix)
32 wmatrix <- "optimal"
36 …ist(data = data, g = g, x = x, t0 = t0, gradv = gradv, type = type, wmatrix = wmatrix, vcov = vcov… nameattr
50 evalGmm <- function(g, x, t0, tetw=NULL, gradv=NULL, wmatrix = c("optimal","ident"), argument
62 wmatrix <- match.arg(wmatrix)
68 wmatrix <- "optimal"
72 type = type, wmatrix = wmatrix, vcov = vcov, kernel = kernel, nameattr
H A DmomentEstim.R189 if (q == k2 | P$wmatrix == "ident")
296 if (q == k2 | P$wmatrix == "ident")
328 if (P$vcov == "iid" & P$wmatrix != "ident")
348 if (q == k2 | P$wmatrix == "ident")
395 if (P$vcov == "iid" & P$wmatrix != "ident")
464 if (q == k2 | P$wmatrix == "ident")
554 if (q == k2 | P$wmatrix == "ident")
642 if (q == k2 | P$wmatrix == "ident")
645 res <- gmm(P$allArg$g,P$allArg$x,P$t0,wmatrix="ident",optfct=P$optfct, ...)
655 res <- try(gmm(P$allArg$g,P$allArg$x,P$t0,wmatrix="ident",
/dports/math/py-statsmodels/statsmodels-0.13.1/statsmodels/sandbox/regression/tests/
H A Dresults_gmm_poisson.py30 wmatrix="robust",
125 wmatrix="robust",
219 wmatrix="robust",
314 wmatrix="robust",
408 wmatrix="robust",
505 wmatrix="robust",
H A Dresults_gmm_griliches.py37 wmatrix="robust",
170 wmatrix="robust",
H A Dresults_gmm_griliches_iter.py31 wmatrix="robust",
/dports/science/nwchem/nwchem-7b21660b82ebd85ef659f6fba7e1e73433b0bd0a/src/selci/
H A Dcouple.c607 FILE *wmatrix; in SELCI_COUPLE() local
659 if ( (wmatrix = fopen(filename, "w")) == (FILE *) NULL) in SELCI_COUPLE()
662 (void) fprintf(wmatrix,"%d\n%d\n",multi,ns); in SELCI_COUPLE()
664 (void) fprintf(wmatrix,"%d ",bd[multi][i]); in SELCI_COUPLE()
665 (void) fprintf(wmatrix,"\n"); in SELCI_COUPLE()
710 (void) fprintf(wmatrix,"%.14g\n",*temp++); in SELCI_COUPLE()
728 (void) fprintf(wmatrix,"%.14g\n",*temp++); in SELCI_COUPLE()
750 (void) fprintf(wmatrix,"%.14g\n",*ttemp++); in SELCI_COUPLE()
772 (void) fprintf(wmatrix,"%.14g\n",*ttemp++); in SELCI_COUPLE()
783 (void) fclose(wmatrix); in SELCI_COUPLE()
/dports/science/nwchem-data/nwchem-7.0.2-release/src/selci/
H A Dcouple.c607 FILE *wmatrix; in SELCI_COUPLE() local
659 if ( (wmatrix = fopen(filename, "w")) == (FILE *) NULL) in SELCI_COUPLE()
662 (void) fprintf(wmatrix,"%d\n%d\n",multi,ns); in SELCI_COUPLE()
664 (void) fprintf(wmatrix,"%d ",bd[multi][i]); in SELCI_COUPLE()
665 (void) fprintf(wmatrix,"\n"); in SELCI_COUPLE()
710 (void) fprintf(wmatrix,"%.14g\n",*temp++); in SELCI_COUPLE()
728 (void) fprintf(wmatrix,"%.14g\n",*temp++); in SELCI_COUPLE()
750 (void) fprintf(wmatrix,"%.14g\n",*ttemp++); in SELCI_COUPLE()
772 (void) fprintf(wmatrix,"%.14g\n",*ttemp++); in SELCI_COUPLE()
783 (void) fclose(wmatrix); in SELCI_COUPLE()
/dports/math/R-cran-Matching/Matching/R/
H A DGenMatching.R545 wmatrix <- diag(x, nrow=nvars) functionVar
546 if ( min(eigen(wmatrix, symmetric=TRUE, only.values=TRUE)$values) < tolerance )
547 wmatrix <- wmatrix + diag(nvars)*tolerance
549 ww <- chol(wmatrix)
994 wmatrix <- diag(rr$par, nrow=nvars) functionVar
996 if ( min(eigen(wmatrix, symmetric=TRUE, only.values=TRUE)$values) < tolerance )
997 wmatrix <- wmatrix + diag(nvars)*tolerance
999 ww <- chol(wmatrix)
1006 rr2 <- list(value=rr$value, par=rr$par, Weight.matrix=wmatrix, matches=mout, ecaliper=NULL)
1022 … rr2 <- list(value=rr$value, par=rr$par, Weight.matrix=wmatrix, matches=mout, ecaliper=CaliperVec)
/dports/print/qpdf/qpdf-10.5.0/libqpdf/
H A DQPDFPageObjectHelper.cc963 QPDFMatrix wmatrix; // work matrix in getMatrixForFormXObjectPlacement() local
974 wmatrix.concat(tmatrix); in getMatrixForFormXObjectPlacement()
984 wmatrix.concat(fmatrix); in getMatrixForFormXObjectPlacement()
996 QPDFObjectHandle::Rectangle T = wmatrix.transformRectangle(bbox); in getMatrixForFormXObjectPlacement()
1029 wmatrix = QPDFMatrix(); in getMatrixForFormXObjectPlacement()
1030 wmatrix.scale(scale, scale); in getMatrixForFormXObjectPlacement()
1031 wmatrix.concat(tmatrix); in getMatrixForFormXObjectPlacement()
1032 wmatrix.concat(fmatrix); in getMatrixForFormXObjectPlacement()
1034 T = wmatrix.transformRectangle(bbox); in getMatrixForFormXObjectPlacement()
/dports/games/xonotic/Xonotic/misc/tools/
H A Dweapon-profiler-analyzer.pl144 my @wmatrix = map { [ map { 0 } @allweps ] } @allweps;
163 $wmatrix[$i][$j] = $w; # symmetric
170 @val = SolveBestSquares(\@dmatrix, \@wmatrix);
/dports/finance/R-cran-fBasics/fBasics/R/
H A Dbuiltin-gmmGmm.R65 wmatrix = c("optimal","ident"), vcov=c("HAC","iid"), argument
74 wmatrix <- match.arg(wmatrix)
186 if (q == k2 | wmatrix == "ident")
358 if (wmatrix == "optimal")
/dports/science/mmdb2/mmdb2-2.0.20/mmdb2/
H A Dmmdb_mattype.h165 typedef wvector * wmatrix; typedef
175 typedef wmatrix * wmatrix3;
293 ( wmatrix & W, word N, word M, word ShiftN=1, word ShiftM=1 );
314 extern void FreeMatrixMemory ( wmatrix & W, word N,
/dports/finance/R-cran-gmm/gmm/inst/doc/
H A Dgmm_with_R.R236 print(res<-gmm(g4,x5t[,4:7],wmatrix="ident"))
263 tet0 <- gmm(g4,x=x5t[,4:7],wmatrix="ident")$coef
/dports/finance/R-cran-gmm/gmm/man/
H A DsysGmm.Rd15 sysGmm(g, h, wmatrix = c("optimal","ident"),
32 \item{wmatrix}{Which weighting matrix should be used in the objective function. By default, it is t…
/dports/science/nwchem/nwchem-7b21660b82ebd85ef659f6fba7e1e73433b0bd0a/src/nwpw/pspw/lib/psp/
H A Dpaw.F4043 subroutine psp_gen_density_matrix(ispin,ne,nprj,sw1,wmatrix) argument
4047 real*8 wmatrix(nprj,nprj,ispin) local
4066 call Parallel_shared_vector_zero(.true.,ispin*nprj*nprj,wmatrix)
4073 wmatrix(j,j,ms) = wmatrix(j,j,ms) + sw1(n,j)*sw1(n,j)
4086 wmatrix(i,j,ms) = wmatrix(i,j,ms) + tmp
4087 wmatrix(j,i,ms) = wmatrix(j,i,ms) + tmp
4096 call Parallel_Vector_SumAll(ispin*nprj*nprj,wmatrix)

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