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/dports/biology/tRNAscan-SE/tRNAscan-SE-2.0/src/
H A Dfastmodelmaker.c343 zmat[j][i] = zmat[j-1][i+1] + mxy[j][i]; in zfill()
346 if (zmat[j][i+1] > zmat[j][i]) in zfill()
347 zmat[j][i] = zmat[j][i+1]; in zfill()
348 if (zmat[j-1][i] > zmat[j][i]) in zfill()
349 zmat[j][i] = zmat[j-1][i]; in zfill()
351 if (zmat[mid][i] + zmat[j][mid+1] > zmat[j][i]) in zfill()
352 zmat[j][i] = zmat[mid][i] + zmat[j][mid+1]; in zfill()
374 free(zmat); in free_zmat()
463 else if (zmat[j][i] == zmat[j][i+1]) in ztrace()
475 else if (zmat[j][i] == zmat[j-1][i]) in ztrace()
[all …]
/dports/science/tfel/tfel-3.4.0/docs/mfront/zmat/
H A DMakefile.doc.in1 zmat:
2 TEXMFHOME=@abs_top_srcdir@/docs/tex/texmf latex zmat.tex
3 TEXMFHOME=@abs_top_srcdir@/docs/tex/texmf latex zmat.tex
4 BSTINPUTS=@abs_top_srcdir@/docs/tex/texmf/bibtex bibtex zmat
5 TEXMFHOME=@abs_top_srcdir@/docs/tex/texmf latex zmat.tex
6 TEXMFHOME=@abs_top_srcdir@/docs/tex/texmf latex zmat.tex
7 TEXMFHOME=@abs_top_srcdir@/docs/tex/texmf dvips -R0 zmat.dvi -o
8 ps2pdf zmat.ps
/dports/science/tfel-edf/tfel-3.2.1/docs/mfront/zmat/
H A DMakefile.doc.in1 zmat:
2 TEXMFHOME=@abs_top_srcdir@/docs/tex/texmf latex zmat.tex
3 TEXMFHOME=@abs_top_srcdir@/docs/tex/texmf latex zmat.tex
4 BSTINPUTS=@abs_top_srcdir@/docs/tex/texmf/bibtex bibtex zmat
5 TEXMFHOME=@abs_top_srcdir@/docs/tex/texmf latex zmat.tex
6 TEXMFHOME=@abs_top_srcdir@/docs/tex/texmf latex zmat.tex
7 TEXMFHOME=@abs_top_srcdir@/docs/tex/texmf dvips -R0 zmat.dvi -o
8 ps2pdf zmat.ps
/dports/math/scilab/scilab-6.1.1/scilab/modules/graphics/macros/
H A Dgenfac3d.sci12 function [xx,yy,zz]=genfac3d(x,y,zmat,mask)
16 // [xx,yy,zz]=genfac3d(x,y,zmat,mask)
18 // zmat : matrix , zmat(i,j)= F(x(j),y(i))
21 // mask : boolean optional matrix with same size as zmat used to select
22 // entries of zmat to be represented by facets
33 zmat=sin(t)*cos(t');
34 [xx,yy,zz]=genfac3d(t,t,zmat,zmat>=0);
43 [nr,nc]=size(zmat)
53 zz=matrix(zmat(indz),4,nrl*nrc/4);
/dports/graphics/gle/gle-3.1.0/src/
H A Dview.c156 float zmat [4][4]; in uview_dire() local
182 urot_axis (zmat, (float) theta, v_cross_z); in uview_dire()
186 IDENTIFY_MATRIX_4X4 (zmat); in uview_dire()
192 zmat[0][0] = -1.0; in uview_dire()
193 zmat[2][2] = -1.0; in uview_dire()
206 y_hat[0] = zmat [1][0]; in uview_dire()
207 y_hat[1] = zmat [1][1]; in uview_dire()
208 y_hat[2] = zmat [1][2]; in uview_dire()
247 MATRIX_PRODUCT_4X4 (m, zmat, upmat); in uview_dire()
/dports/science/py-molmod/molmod-1.4.8/molmod/
H A Dzmatrix.py157 def zmat_to_cart(zmat): argument
160 numbers = zmat["number"]
165 coordinates[1, 2] = zmat["distance"][1]
166 if zmat["rel1"][2] == 1:
170 coordinates[2, 2] = zmat["distance"][2]*sign*np.cos(zmat["angle"][2])
171 coordinates[2, 1] = zmat["distance"][2]*sign*np.sin(zmat["angle"][2])
172 coordinates[2] += coordinates[2-zmat["rel1"][2]]
175 for (number, distance, rel1, angle, rel2, dihed, rel3) in zmat[3:]:
/dports/science/R-cran-bayesm/bayesm/src/
H A DrmvpGibbs_rcpp_loop.cpp69 mat sigmai, zmat, epsilon, S, IW, ucholinv, VSinv; in rmvpGibbs_rcpp_loop() local
97 zmat = join_rows(wnew,X); //similar to cbind(wnew,X) in rmvpGibbs_rcpp_loop()
98 zmat.reshape(p,n*(k+1)); in rmvpGibbs_rcpp_loop()
99 zmat = C*zmat; in rmvpGibbs_rcpp_loop()
100 zmat.reshape(X.n_rows,k+1); in rmvpGibbs_rcpp_loop()
102 betanew = breg(zmat(span::all,0),zmat(span::all,span(1,k)),betabar,A); in rmvpGibbs_rcpp_loop()
H A DrmnpGibbs_rcpp_loop.cpp78 mat sigmai, zmat, epsilon, S, IW, ucholinv, VSinv; in rmnpGibbs_rcpp_loop() local
105 zmat = join_rows(wnew,X); in rmnpGibbs_rcpp_loop()
106 zmat.reshape(pm1,n*(k+1)); in rmnpGibbs_rcpp_loop()
107 zmat = C*zmat; in rmnpGibbs_rcpp_loop()
108 zmat.reshape(Xrows,k+1); in rmnpGibbs_rcpp_loop()
110 betanew = breg(zmat(span::all,0),zmat(span::all,span(1,k)),betabar,A); in rmnpGibbs_rcpp_loop()
/dports/math/e-antic/flint2-ae7ec89/fmpq_mat/
H A Dcharpoly.c20 fmpz_mat_t zmat; in _fmpq_mat_charpoly() local
31 fmpz_mat_init(zmat, mat->r, mat->c); in _fmpq_mat_charpoly()
33 fmpq_mat_get_fmpz_mat_matwise(zmat, p, mat); in _fmpq_mat_charpoly()
35 _fmpz_mat_charpoly(coeffs, zmat); in _fmpq_mat_charpoly()
52 fmpz_mat_clear(zmat); in _fmpq_mat_charpoly()
H A Dminpoly.c20 fmpz_mat_t zmat; in _fmpq_mat_minpoly() local
31 fmpz_mat_init(zmat, mat->r, mat->c); in _fmpq_mat_minpoly()
33 fmpq_mat_get_fmpz_mat_matwise(zmat, p, mat); in _fmpq_mat_minpoly()
35 len = _fmpz_mat_minpoly(coeffs, zmat); in _fmpq_mat_minpoly()
52 fmpz_mat_clear(zmat); in _fmpq_mat_minpoly()
/dports/math/e-antic/e-antic-1.0.0-rc.13/libeantic/upstream/antic/fmpq_mat/
H A Dcharpoly.c20 fmpz_mat_t zmat; in _fmpq_mat_charpoly() local
31 fmpz_mat_init(zmat, mat->r, mat->c); in _fmpq_mat_charpoly()
33 fmpq_mat_get_fmpz_mat_matwise(zmat, p, mat); in _fmpq_mat_charpoly()
35 _fmpz_mat_charpoly(coeffs, zmat); in _fmpq_mat_charpoly()
52 fmpz_mat_clear(zmat); in _fmpq_mat_charpoly()
H A Dminpoly.c20 fmpz_mat_t zmat; in _fmpq_mat_minpoly() local
31 fmpz_mat_init(zmat, mat->r, mat->c); in _fmpq_mat_minpoly()
33 fmpq_mat_get_fmpz_mat_matwise(zmat, p, mat); in _fmpq_mat_minpoly()
35 len = _fmpz_mat_minpoly(coeffs, zmat); in _fmpq_mat_minpoly()
52 fmpz_mat_clear(zmat); in _fmpq_mat_minpoly()
/dports/math/flint2/flint-2.8.4/fmpq_mat/
H A Dcharpoly.c20 fmpz_mat_t zmat; in _fmpq_mat_charpoly() local
31 fmpz_mat_init(zmat, mat->r, mat->c); in _fmpq_mat_charpoly()
33 fmpq_mat_get_fmpz_mat_matwise(zmat, p, mat); in _fmpq_mat_charpoly()
35 _fmpz_mat_charpoly(coeffs, zmat); in _fmpq_mat_charpoly()
52 fmpz_mat_clear(zmat); in _fmpq_mat_charpoly()
H A Dminpoly.c20 fmpz_mat_t zmat; in _fmpq_mat_minpoly() local
31 fmpz_mat_init(zmat, mat->r, mat->c); in _fmpq_mat_minpoly()
33 fmpq_mat_get_fmpz_mat_matwise(zmat, p, mat); in _fmpq_mat_minpoly()
35 len = _fmpz_mat_minpoly(coeffs, zmat); in _fmpq_mat_minpoly()
52 fmpz_mat_clear(zmat); in _fmpq_mat_minpoly()
/dports/devel/vcglib/vcglib-2020.09/wrap/newuoa/include/
H A Dnewuoa.h94 zmat -= zmat_offset; in biglag_()
306 zmat -= zmat_offset; in bigden_()
888 zmat -= zmat_offset; in update_()
912 temp = tempa * zmat[i__ + jl * zmat_dim1] + tempb * zmat[i__ in update_()
914 zmat[i__ + j * zmat_dim1] = tempa * zmat[i__ + j * zmat_dim1] in update_()
923 tempa = zmat[*knew + zmat_dim1]; in update_()
947 zmat[i__ + zmat_dim1] = tempa * zmat[i__ + zmat_dim1] - tempb * in update_()
966 zmat[i__ + ja * zmat_dim1] = scala * (tau * zmat[i__ + ja * in update_()
968 zmat[i__ + jb * zmat_dim1] = scalb * (zmat[i__ + jb * zmat_dim1] in update_()
983 zmat[i__ + zmat_dim1] = zmat[i__ + *idz * zmat_dim1]; in update_()
[all …]
/dports/cad/meshlab/meshlab-Meshlab-2020.05/src/external/newuoa/include/
H A Dnewuoa.h94 zmat -= zmat_offset; in biglag_()
306 zmat -= zmat_offset; in bigden_()
888 zmat -= zmat_offset; in update_()
912 temp = tempa * zmat[i__ + jl * zmat_dim1] + tempb * zmat[i__ in update_()
914 zmat[i__ + j * zmat_dim1] = tempa * zmat[i__ + j * zmat_dim1] in update_()
923 tempa = zmat[*knew + zmat_dim1]; in update_()
947 zmat[i__ + zmat_dim1] = tempa * zmat[i__ + zmat_dim1] - tempb * in update_()
966 zmat[i__ + ja * zmat_dim1] = scala * (tau * zmat[i__ + ja * in update_()
968 zmat[i__ + jb * zmat_dim1] = scalb * (zmat[i__ + jb * zmat_dim1] in update_()
983 zmat[i__ + zmat_dim1] = zmat[i__ + *idz * zmat_dim1]; in update_()
[all …]
/dports/science/cp2k/cp2k-2e995eec7fd208c8a72d9544807bd8b8ba8cd1cc/src/common/
H A Dpowell.F353 zmat(k, j) = zero
439 zmat(1, nfmm) = recip
1089 temp = zmat(knew, j)
1957 temp = SQRT(zmat(knew, jl)**2 + zmat(knew, j)**2)
1961 temp = tempa*zmat(i, jl) + tempb*zmat(i, j)
1962 zmat(i, j) = tempa*zmat(i, j) - tempb*zmat(i, jl)
1972 tempa = zmat(knew, 1)
1995 zmat(i, 1) = tempa*zmat(i, 1) - tempb*vlag(i)
2013 zmat(i, ja) = scala*(tau*zmat(i, ja) - temp*vlag(i))
2014 zmat(i, jb) = scalb*(zmat(i, jb) - tempa*w(i) - tempb*vlag(i))
[all …]
/dports/science/cp2k-data/cp2k-7.1.0/src/common/
H A Dpowell.F353 zmat(k, j) = zero
439 zmat(1, nfmm) = recip
1089 temp = zmat(knew, j)
1957 temp = SQRT(zmat(knew, jl)**2 + zmat(knew, j)**2)
1961 temp = tempa*zmat(i, jl) + tempb*zmat(i, j)
1962 zmat(i, j) = tempa*zmat(i, j) - tempb*zmat(i, jl)
1972 tempa = zmat(knew, 1)
1995 zmat(i, 1) = tempa*zmat(i, 1) - tempb*vlag(i)
2013 zmat(i, ja) = scala*(tau*zmat(i, ja) - temp*vlag(i))
2014 zmat(i, jb) = scalb*(zmat(i, jb) - tempa*w(i) - tempb*vlag(i))
[all …]
/dports/science/erkale/erkale-8297aefe5aac9dbbb291e04c07661f3cff94a99a/src/
H A Dzmatrix.cpp256 std::vector< std::vector<std::string> > zmat; in load_zmat() local
272 zmat.push_back(splitline(line)); in load_zmat()
310 for(size_t j=1;j<zmat.size();j++) { in load_zmat()
311 if(stricmp(zmat[j][2],ass[0])==0) in load_zmat()
312 zmat[j][2]=ass[1]; in load_zmat()
314 if(zmat[j].size()>=5 && stricmp(zmat[j][4],ass[0])==0) in load_zmat()
315 zmat[j][4]=ass[1]; in load_zmat()
317 if(zmat[j].size()>=7 && stricmp(zmat[j][6],ass[0])==0) in load_zmat()
318 zmat[j][6]=ass[1]; in load_zmat()
323 for(size_t i=0;i<zmat.size();i++) in load_zmat()
[all …]
/dports/science/erkale-pseudopotentials/erkale-870e772f09631b3dbdd99a18e4f3d4786d684a01/src/
H A Dzmatrix.cpp256 std::vector< std::vector<std::string> > zmat; in load_zmat() local
260 zmat.push_back(splitline(line)); in load_zmat()
288 for(size_t j=1;j<zmat.size();j++) { in load_zmat()
289 if(stricmp(zmat[j][2],ass[0])==0) in load_zmat()
290 zmat[j][2]=ass[1]; in load_zmat()
292 if(zmat[j].size()>=5 && stricmp(zmat[j][4],ass[0])==0) in load_zmat()
293 zmat[j][4]=ass[1]; in load_zmat()
295 if(zmat[j].size()>=7 && stricmp(zmat[j][6],ass[0])==0) in load_zmat()
296 zmat[j][6]=ass[1]; in load_zmat()
301 for(size_t i=0;i<zmat.size();i++) in load_zmat()
[all …]
/dports/science/tfel/tfel-3.4.0/mfront/include/MFront/ZMAT/
H A Dzmat.doxygen2 * \file mfront/include/MFront/ZMAT/zmat.doxygen
3 * \brief This file documents the zmat namespace.
7 * \namespace zmat
8 * \brief the namespace zmat contains material related to the MFront
/dports/science/tfel-edf/tfel-3.2.1/mfront/include/MFront/ZMAT/
H A Dzmat.doxygen2 * \file mfront/include/MFront/ZMAT/zmat.doxygen
3 * \brief This file documents the zmat namespace.
7 * \namespace zmat
8 * \brief the namespace zmat contains material related to the MFront
/dports/science/lammps/lammps-stable_29Sep2021/examples/PACKAGES/fep/CC-CO/mols/
H A DREADME8 fftool.py 1 CC-CO.zmat 360 spce.zmat -r 50
12 fftool.py 1 CC-CO.zmat 360 spce.zmat -r 50 -l -a
/dports/math/R-cran-VGAM/VGAM/R/
H A Dvlm.wfit.q17 function(xmat, zmat, Hlist, wz = NULL, U = NULL, argument
41 zmat <- as.matrix(zmat)
42 n <- nrow(zmat)
43 M <- ncol(zmat)
46 znames <- dimnames(zmat)[[2]]
50 zmat <- zmat - offset
73 z.vlm <- mux22(U, zmat, M = M, upper = TRUE, as.matrix = FALSE)
201 dimnames(ans$fitted.values) <- list(dimnames(zmat)[[1]], znames)
203 ans$residuals <- if (M == 1) c(zmat-fv) else zmat-fv
/dports/science/py-dlib/dlib-19.22/dlib/optimization/
H A Doptimization_bobyqa.h258 doublereal *zmat, in bobyqb_() argument
1042 suma += zmat[knew + jj * zmat_dim1] * zmat[k + jj * zmat_dim1]; in bobyqb_()
1997 zmat[nf - n + nfx * zmat_dim1] = -zmat[nfx * zmat_dim1 + 1] - in prelim_()
2245 zmat[jp + j * zmat_dim1] = zmat[j * zmat_dim1 + 1] * ptsaux[(j << in rescue_()
2247 zmat[jpn + j * zmat_dim1] = -zmat[j * zmat_dim1 + 1] * ptsaux[(j in rescue_()
2299 zmat[kold + j * zmat_dim1] = zmat[knew + j * zmat_dim1]; in rescue_()
2597 sum += zmat[k + j * zmat_dim1] * zmat[kpt + j * zmat_dim1]; in rescue_()
3281 temp = tempa * zmat[i__ + zmat_dim1] + tempb * zmat[i__ + j * in update_()
3283 zmat[i__ + j * zmat_dim1] = tempa * zmat[i__ + j * zmat_dim1] in update_()
3298 w[i__] = zmat[knew + zmat_dim1] * zmat[i__ + zmat_dim1]; in update_()
[all …]

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