/dports/biology/tRNAscan-SE/tRNAscan-SE-2.0/src/ |
H A D | fastmodelmaker.c | 343 zmat[j][i] = zmat[j-1][i+1] + mxy[j][i]; in zfill() 346 if (zmat[j][i+1] > zmat[j][i]) in zfill() 347 zmat[j][i] = zmat[j][i+1]; in zfill() 348 if (zmat[j-1][i] > zmat[j][i]) in zfill() 349 zmat[j][i] = zmat[j-1][i]; in zfill() 351 if (zmat[mid][i] + zmat[j][mid+1] > zmat[j][i]) in zfill() 352 zmat[j][i] = zmat[mid][i] + zmat[j][mid+1]; in zfill() 374 free(zmat); in free_zmat() 463 else if (zmat[j][i] == zmat[j][i+1]) in ztrace() 475 else if (zmat[j][i] == zmat[j-1][i]) in ztrace() [all …]
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/dports/science/tfel/tfel-3.4.0/docs/mfront/zmat/ |
H A D | Makefile.doc.in | 1 zmat: 2 TEXMFHOME=@abs_top_srcdir@/docs/tex/texmf latex zmat.tex 3 TEXMFHOME=@abs_top_srcdir@/docs/tex/texmf latex zmat.tex 4 BSTINPUTS=@abs_top_srcdir@/docs/tex/texmf/bibtex bibtex zmat 5 TEXMFHOME=@abs_top_srcdir@/docs/tex/texmf latex zmat.tex 6 TEXMFHOME=@abs_top_srcdir@/docs/tex/texmf latex zmat.tex 7 TEXMFHOME=@abs_top_srcdir@/docs/tex/texmf dvips -R0 zmat.dvi -o 8 ps2pdf zmat.ps
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/dports/science/tfel-edf/tfel-3.2.1/docs/mfront/zmat/ |
H A D | Makefile.doc.in | 1 zmat: 2 TEXMFHOME=@abs_top_srcdir@/docs/tex/texmf latex zmat.tex 3 TEXMFHOME=@abs_top_srcdir@/docs/tex/texmf latex zmat.tex 4 BSTINPUTS=@abs_top_srcdir@/docs/tex/texmf/bibtex bibtex zmat 5 TEXMFHOME=@abs_top_srcdir@/docs/tex/texmf latex zmat.tex 6 TEXMFHOME=@abs_top_srcdir@/docs/tex/texmf latex zmat.tex 7 TEXMFHOME=@abs_top_srcdir@/docs/tex/texmf dvips -R0 zmat.dvi -o 8 ps2pdf zmat.ps
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/dports/math/scilab/scilab-6.1.1/scilab/modules/graphics/macros/ |
H A D | genfac3d.sci | 12 function [xx,yy,zz]=genfac3d(x,y,zmat,mask) 16 // [xx,yy,zz]=genfac3d(x,y,zmat,mask) 18 // zmat : matrix , zmat(i,j)= F(x(j),y(i)) 21 // mask : boolean optional matrix with same size as zmat used to select 22 // entries of zmat to be represented by facets 33 zmat=sin(t)*cos(t'); 34 [xx,yy,zz]=genfac3d(t,t,zmat,zmat>=0); 43 [nr,nc]=size(zmat) 53 zz=matrix(zmat(indz),4,nrl*nrc/4);
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/dports/graphics/gle/gle-3.1.0/src/ |
H A D | view.c | 156 float zmat [4][4]; in uview_dire() local 182 urot_axis (zmat, (float) theta, v_cross_z); in uview_dire() 186 IDENTIFY_MATRIX_4X4 (zmat); in uview_dire() 192 zmat[0][0] = -1.0; in uview_dire() 193 zmat[2][2] = -1.0; in uview_dire() 206 y_hat[0] = zmat [1][0]; in uview_dire() 207 y_hat[1] = zmat [1][1]; in uview_dire() 208 y_hat[2] = zmat [1][2]; in uview_dire() 247 MATRIX_PRODUCT_4X4 (m, zmat, upmat); in uview_dire()
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/dports/science/py-molmod/molmod-1.4.8/molmod/ |
H A D | zmatrix.py | 157 def zmat_to_cart(zmat): argument 160 numbers = zmat["number"] 165 coordinates[1, 2] = zmat["distance"][1] 166 if zmat["rel1"][2] == 1: 170 coordinates[2, 2] = zmat["distance"][2]*sign*np.cos(zmat["angle"][2]) 171 coordinates[2, 1] = zmat["distance"][2]*sign*np.sin(zmat["angle"][2]) 172 coordinates[2] += coordinates[2-zmat["rel1"][2]] 175 for (number, distance, rel1, angle, rel2, dihed, rel3) in zmat[3:]:
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/dports/science/R-cran-bayesm/bayesm/src/ |
H A D | rmvpGibbs_rcpp_loop.cpp | 69 mat sigmai, zmat, epsilon, S, IW, ucholinv, VSinv; in rmvpGibbs_rcpp_loop() local 97 zmat = join_rows(wnew,X); //similar to cbind(wnew,X) in rmvpGibbs_rcpp_loop() 98 zmat.reshape(p,n*(k+1)); in rmvpGibbs_rcpp_loop() 99 zmat = C*zmat; in rmvpGibbs_rcpp_loop() 100 zmat.reshape(X.n_rows,k+1); in rmvpGibbs_rcpp_loop() 102 betanew = breg(zmat(span::all,0),zmat(span::all,span(1,k)),betabar,A); in rmvpGibbs_rcpp_loop()
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H A D | rmnpGibbs_rcpp_loop.cpp | 78 mat sigmai, zmat, epsilon, S, IW, ucholinv, VSinv; in rmnpGibbs_rcpp_loop() local 105 zmat = join_rows(wnew,X); in rmnpGibbs_rcpp_loop() 106 zmat.reshape(pm1,n*(k+1)); in rmnpGibbs_rcpp_loop() 107 zmat = C*zmat; in rmnpGibbs_rcpp_loop() 108 zmat.reshape(Xrows,k+1); in rmnpGibbs_rcpp_loop() 110 betanew = breg(zmat(span::all,0),zmat(span::all,span(1,k)),betabar,A); in rmnpGibbs_rcpp_loop()
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/dports/math/e-antic/flint2-ae7ec89/fmpq_mat/ |
H A D | charpoly.c | 20 fmpz_mat_t zmat; in _fmpq_mat_charpoly() local 31 fmpz_mat_init(zmat, mat->r, mat->c); in _fmpq_mat_charpoly() 33 fmpq_mat_get_fmpz_mat_matwise(zmat, p, mat); in _fmpq_mat_charpoly() 35 _fmpz_mat_charpoly(coeffs, zmat); in _fmpq_mat_charpoly() 52 fmpz_mat_clear(zmat); in _fmpq_mat_charpoly()
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H A D | minpoly.c | 20 fmpz_mat_t zmat; in _fmpq_mat_minpoly() local 31 fmpz_mat_init(zmat, mat->r, mat->c); in _fmpq_mat_minpoly() 33 fmpq_mat_get_fmpz_mat_matwise(zmat, p, mat); in _fmpq_mat_minpoly() 35 len = _fmpz_mat_minpoly(coeffs, zmat); in _fmpq_mat_minpoly() 52 fmpz_mat_clear(zmat); in _fmpq_mat_minpoly()
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/dports/math/e-antic/e-antic-1.0.0-rc.13/libeantic/upstream/antic/fmpq_mat/ |
H A D | charpoly.c | 20 fmpz_mat_t zmat; in _fmpq_mat_charpoly() local 31 fmpz_mat_init(zmat, mat->r, mat->c); in _fmpq_mat_charpoly() 33 fmpq_mat_get_fmpz_mat_matwise(zmat, p, mat); in _fmpq_mat_charpoly() 35 _fmpz_mat_charpoly(coeffs, zmat); in _fmpq_mat_charpoly() 52 fmpz_mat_clear(zmat); in _fmpq_mat_charpoly()
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H A D | minpoly.c | 20 fmpz_mat_t zmat; in _fmpq_mat_minpoly() local 31 fmpz_mat_init(zmat, mat->r, mat->c); in _fmpq_mat_minpoly() 33 fmpq_mat_get_fmpz_mat_matwise(zmat, p, mat); in _fmpq_mat_minpoly() 35 len = _fmpz_mat_minpoly(coeffs, zmat); in _fmpq_mat_minpoly() 52 fmpz_mat_clear(zmat); in _fmpq_mat_minpoly()
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/dports/math/flint2/flint-2.8.4/fmpq_mat/ |
H A D | charpoly.c | 20 fmpz_mat_t zmat; in _fmpq_mat_charpoly() local 31 fmpz_mat_init(zmat, mat->r, mat->c); in _fmpq_mat_charpoly() 33 fmpq_mat_get_fmpz_mat_matwise(zmat, p, mat); in _fmpq_mat_charpoly() 35 _fmpz_mat_charpoly(coeffs, zmat); in _fmpq_mat_charpoly() 52 fmpz_mat_clear(zmat); in _fmpq_mat_charpoly()
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H A D | minpoly.c | 20 fmpz_mat_t zmat; in _fmpq_mat_minpoly() local 31 fmpz_mat_init(zmat, mat->r, mat->c); in _fmpq_mat_minpoly() 33 fmpq_mat_get_fmpz_mat_matwise(zmat, p, mat); in _fmpq_mat_minpoly() 35 len = _fmpz_mat_minpoly(coeffs, zmat); in _fmpq_mat_minpoly() 52 fmpz_mat_clear(zmat); in _fmpq_mat_minpoly()
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/dports/devel/vcglib/vcglib-2020.09/wrap/newuoa/include/ |
H A D | newuoa.h | 94 zmat -= zmat_offset; in biglag_() 306 zmat -= zmat_offset; in bigden_() 888 zmat -= zmat_offset; in update_() 912 temp = tempa * zmat[i__ + jl * zmat_dim1] + tempb * zmat[i__ in update_() 914 zmat[i__ + j * zmat_dim1] = tempa * zmat[i__ + j * zmat_dim1] in update_() 923 tempa = zmat[*knew + zmat_dim1]; in update_() 947 zmat[i__ + zmat_dim1] = tempa * zmat[i__ + zmat_dim1] - tempb * in update_() 966 zmat[i__ + ja * zmat_dim1] = scala * (tau * zmat[i__ + ja * in update_() 968 zmat[i__ + jb * zmat_dim1] = scalb * (zmat[i__ + jb * zmat_dim1] in update_() 983 zmat[i__ + zmat_dim1] = zmat[i__ + *idz * zmat_dim1]; in update_() [all …]
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/dports/cad/meshlab/meshlab-Meshlab-2020.05/src/external/newuoa/include/ |
H A D | newuoa.h | 94 zmat -= zmat_offset; in biglag_() 306 zmat -= zmat_offset; in bigden_() 888 zmat -= zmat_offset; in update_() 912 temp = tempa * zmat[i__ + jl * zmat_dim1] + tempb * zmat[i__ in update_() 914 zmat[i__ + j * zmat_dim1] = tempa * zmat[i__ + j * zmat_dim1] in update_() 923 tempa = zmat[*knew + zmat_dim1]; in update_() 947 zmat[i__ + zmat_dim1] = tempa * zmat[i__ + zmat_dim1] - tempb * in update_() 966 zmat[i__ + ja * zmat_dim1] = scala * (tau * zmat[i__ + ja * in update_() 968 zmat[i__ + jb * zmat_dim1] = scalb * (zmat[i__ + jb * zmat_dim1] in update_() 983 zmat[i__ + zmat_dim1] = zmat[i__ + *idz * zmat_dim1]; in update_() [all …]
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/dports/science/cp2k/cp2k-2e995eec7fd208c8a72d9544807bd8b8ba8cd1cc/src/common/ |
H A D | powell.F | 353 zmat(k, j) = zero 439 zmat(1, nfmm) = recip 1089 temp = zmat(knew, j) 1957 temp = SQRT(zmat(knew, jl)**2 + zmat(knew, j)**2) 1961 temp = tempa*zmat(i, jl) + tempb*zmat(i, j) 1962 zmat(i, j) = tempa*zmat(i, j) - tempb*zmat(i, jl) 1972 tempa = zmat(knew, 1) 1995 zmat(i, 1) = tempa*zmat(i, 1) - tempb*vlag(i) 2013 zmat(i, ja) = scala*(tau*zmat(i, ja) - temp*vlag(i)) 2014 zmat(i, jb) = scalb*(zmat(i, jb) - tempa*w(i) - tempb*vlag(i)) [all …]
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/dports/science/cp2k-data/cp2k-7.1.0/src/common/ |
H A D | powell.F | 353 zmat(k, j) = zero 439 zmat(1, nfmm) = recip 1089 temp = zmat(knew, j) 1957 temp = SQRT(zmat(knew, jl)**2 + zmat(knew, j)**2) 1961 temp = tempa*zmat(i, jl) + tempb*zmat(i, j) 1962 zmat(i, j) = tempa*zmat(i, j) - tempb*zmat(i, jl) 1972 tempa = zmat(knew, 1) 1995 zmat(i, 1) = tempa*zmat(i, 1) - tempb*vlag(i) 2013 zmat(i, ja) = scala*(tau*zmat(i, ja) - temp*vlag(i)) 2014 zmat(i, jb) = scalb*(zmat(i, jb) - tempa*w(i) - tempb*vlag(i)) [all …]
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/dports/science/erkale/erkale-8297aefe5aac9dbbb291e04c07661f3cff94a99a/src/ |
H A D | zmatrix.cpp | 256 std::vector< std::vector<std::string> > zmat; in load_zmat() local 272 zmat.push_back(splitline(line)); in load_zmat() 310 for(size_t j=1;j<zmat.size();j++) { in load_zmat() 311 if(stricmp(zmat[j][2],ass[0])==0) in load_zmat() 312 zmat[j][2]=ass[1]; in load_zmat() 314 if(zmat[j].size()>=5 && stricmp(zmat[j][4],ass[0])==0) in load_zmat() 315 zmat[j][4]=ass[1]; in load_zmat() 317 if(zmat[j].size()>=7 && stricmp(zmat[j][6],ass[0])==0) in load_zmat() 318 zmat[j][6]=ass[1]; in load_zmat() 323 for(size_t i=0;i<zmat.size();i++) in load_zmat() [all …]
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/dports/science/erkale-pseudopotentials/erkale-870e772f09631b3dbdd99a18e4f3d4786d684a01/src/ |
H A D | zmatrix.cpp | 256 std::vector< std::vector<std::string> > zmat; in load_zmat() local 260 zmat.push_back(splitline(line)); in load_zmat() 288 for(size_t j=1;j<zmat.size();j++) { in load_zmat() 289 if(stricmp(zmat[j][2],ass[0])==0) in load_zmat() 290 zmat[j][2]=ass[1]; in load_zmat() 292 if(zmat[j].size()>=5 && stricmp(zmat[j][4],ass[0])==0) in load_zmat() 293 zmat[j][4]=ass[1]; in load_zmat() 295 if(zmat[j].size()>=7 && stricmp(zmat[j][6],ass[0])==0) in load_zmat() 296 zmat[j][6]=ass[1]; in load_zmat() 301 for(size_t i=0;i<zmat.size();i++) in load_zmat() [all …]
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/dports/science/tfel/tfel-3.4.0/mfront/include/MFront/ZMAT/ |
H A D | zmat.doxygen | 2 * \file mfront/include/MFront/ZMAT/zmat.doxygen 3 * \brief This file documents the zmat namespace. 7 * \namespace zmat 8 * \brief the namespace zmat contains material related to the MFront
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/dports/science/tfel-edf/tfel-3.2.1/mfront/include/MFront/ZMAT/ |
H A D | zmat.doxygen | 2 * \file mfront/include/MFront/ZMAT/zmat.doxygen 3 * \brief This file documents the zmat namespace. 7 * \namespace zmat 8 * \brief the namespace zmat contains material related to the MFront
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/dports/science/lammps/lammps-stable_29Sep2021/examples/PACKAGES/fep/CC-CO/mols/ |
H A D | README | 8 fftool.py 1 CC-CO.zmat 360 spce.zmat -r 50 12 fftool.py 1 CC-CO.zmat 360 spce.zmat -r 50 -l -a
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/dports/math/R-cran-VGAM/VGAM/R/ |
H A D | vlm.wfit.q | 17 function(xmat, zmat, Hlist, wz = NULL, U = NULL, argument 41 zmat <- as.matrix(zmat) 42 n <- nrow(zmat) 43 M <- ncol(zmat) 46 znames <- dimnames(zmat)[[2]] 50 zmat <- zmat - offset 73 z.vlm <- mux22(U, zmat, M = M, upper = TRUE, as.matrix = FALSE) 201 dimnames(ans$fitted.values) <- list(dimnames(zmat)[[1]], znames) 203 ans$residuals <- if (M == 1) c(zmat-fv) else zmat-fv
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/dports/science/py-dlib/dlib-19.22/dlib/optimization/ |
H A D | optimization_bobyqa.h | 258 doublereal *zmat, in bobyqb_() argument 1042 suma += zmat[knew + jj * zmat_dim1] * zmat[k + jj * zmat_dim1]; in bobyqb_() 1997 zmat[nf - n + nfx * zmat_dim1] = -zmat[nfx * zmat_dim1 + 1] - in prelim_() 2245 zmat[jp + j * zmat_dim1] = zmat[j * zmat_dim1 + 1] * ptsaux[(j << in rescue_() 2247 zmat[jpn + j * zmat_dim1] = -zmat[j * zmat_dim1 + 1] * ptsaux[(j in rescue_() 2299 zmat[kold + j * zmat_dim1] = zmat[knew + j * zmat_dim1]; in rescue_() 2597 sum += zmat[k + j * zmat_dim1] * zmat[kpt + j * zmat_dim1]; in rescue_() 3281 temp = tempa * zmat[i__ + zmat_dim1] + tempb * zmat[i__ + j * in update_() 3283 zmat[i__ + j * zmat_dim1] = tempa * zmat[i__ + j * zmat_dim1] in update_() 3298 w[i__] = zmat[knew + zmat_dim1] * zmat[i__ + zmat_dim1]; in update_() [all …]
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