Searched defs:rate_mat (Results 1 – 5 of 5) sorted by relevance
| /dports/biology/iqtree/IQ-TREE-2.0.6/model/ |
| H A D | modelmarkov.cpp | 420 …Map<Matrix<double,Dynamic,Dynamic,RowMajor>,Aligned >rate_mat(rate_matrix, num_states, num_states); in computeTransMatrixNonrev() local
562 … Map<Matrix<double, Dynamic, Dynamic, RowMajor> > rate_mat(rate_matrix, num_states, num_states); in computeTransDerv() local
648 void ModelMarkov::getRateMatrix(double *rate_mat) { in getRateMatrix()
653 void ModelMarkov::setRateMatrix(double* rate_mat) in setRateMatrix()
659 void ModelMarkov::setFullRateMatrix(double* rate_mat, double *freq) in setFullRateMatrix()
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| H A D | modelsubst.cpp | 109 void ModelSubst::getRateMatrix(double *rate_mat) { in getRateMatrix()
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| H A D | modelgtr.cpp | 357 void ModelGTR::getRateMatrix(double *rate_mat) { in getRateMatrix()
362 void ModelGTR::setRateMatrix(double* rate_mat) in setRateMatrix()
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| /dports/biology/iqtree/IQ-TREE-2.0.6/obsolete/ |
| H A D | ngs.cpp | 963 double *rate_mat = new double[aln.num_states*aln.num_states]; in testSingleRateModel() local
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| /dports/biology/iqtree/IQ-TREE-2.0.6/main/ |
| H A D | phyloanalysis.cpp | 295 double *rate_mat = new double[m->num_states * m->num_states]; in reportModel() local
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