Searched refs:orig_cigar (Results 1 – 3 of 3) sorted by relevance
285 uint32_t *orig_cigar = bam_get_cigar(rec); in bam_trim_left() local327 cig_op = bam_cigar_op(orig_cigar[i]); in bam_trim_left()331 hardclip += bam_cigar_oplen(orig_cigar[i]); in bam_trim_left()375 && bam_cigar_oplen(orig_cigar[i]) > ref_remove) { in bam_trim_left()376 …new_cigar[j++] = bam_cigar_gen(bam_cigar_oplen(orig_cigar[i]) - ref_remove, bam_cigar_op(orig_ciga… in bam_trim_left()382 new_cigar[j++] = orig_cigar[i]; in bam_trim_left()434 uint32_t *orig_cigar = bam_get_cigar(rec); in bam_trim_right() local476 cig_op = bam_cigar_op(orig_cigar[i]); in bam_trim_right()480 hardclip += bam_cigar_oplen(orig_cigar[i]); in bam_trim_right()526 …new_cigar[--j] = bam_cigar_gen(bam_cigar_oplen(orig_cigar[i]) - ref_remove, bam_cigar_op(orig_ciga… in bam_trim_right()[all …]
287 uint32_t *orig_cigar = bam_get_cigar(rec); in bam_trim_left() local329 cig_op = bam_cigar_op(orig_cigar[i]); in bam_trim_left()333 hardclip += bam_cigar_oplen(orig_cigar[i]); in bam_trim_left()377 && bam_cigar_oplen(orig_cigar[i]) > ref_remove) { in bam_trim_left()378 …new_cigar[j++] = bam_cigar_gen(bam_cigar_oplen(orig_cigar[i]) - ref_remove, bam_cigar_op(orig_ciga… in bam_trim_left()384 new_cigar[j++] = orig_cigar[i]; in bam_trim_left()436 uint32_t *orig_cigar = bam_get_cigar(rec); in bam_trim_right() local478 cig_op = bam_cigar_op(orig_cigar[i]); in bam_trim_right()482 hardclip += bam_cigar_oplen(orig_cigar[i]); in bam_trim_right()528 …new_cigar[--j] = bam_cigar_gen(bam_cigar_oplen(orig_cigar[i]) - ref_remove, bam_cigar_op(orig_ciga… in bam_trim_right()[all …]