Searched refs:setCellOff (Results 1 – 6 of 6) sorted by relevance
| /dports/biology/hhsuite/hh-suite-3.3.0/src/ |
| H A D | hhposteriordecoder.cpp | 132 viterbiMatrix.setCellOff(i, j, 0, true); in exclude_regions()
148 viterbiMatrix.setCellOff(i, j, 0, true); in exclude_template_regions()
201 celloff_matrix.setCellOff(i, j, elem, true); in initializeForAlignment()
232 …celloff_matrix.setCellOff(i, j, elem, !((i < hit.i1 && j < hit.j1) || (i > hit.i2 && j > hit.j2)… in maskViterbiAlignment()
236 celloff_matrix.setCellOff(i, hit.j[step], elem, false); in maskViterbiAlignment()
240 celloff_matrix.setCellOff(hit.i[step], j, elem, false); in maskViterbiAlignment()
256 celloff_matrix.setCellOff(ii, j, elem, true); in excludeMACAlignment()
259 celloff_matrix.setCellOff(i, jj, elem, true); in excludeMACAlignment()
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| H A D | hhviterbi.cpp | 71 matrix->setCellOff(ii, j, elem, true); in ExcludeAlignment()
74 matrix->setCellOff(i, jj, elem, true); in ExcludeAlignment()
188 viterbiMatrix->setCellOff(false); // the ViterbiAlign set all Cell of values to false in Align()
332 matrix->setCellOff(i, j, elem, true); // cross out cell near diagonal in InitializeForAlignment()
334 matrix->setCellOff(i, j, elem, false); // no other cells crossed out yet in InitializeForAlignment()
344 matrix->setCellOff(i, j, elem, false); // no other cells crossed out yet in InitializeForAlignment()
354 matrix->setCellOff(i, j, elem, true); in InitializeForAlignment()
357 matrix->setCellOff(i, j, elem, true); in InitializeForAlignment()
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| H A D | hhviterbimatrix-inl.h | 22 inline void ViterbiMatrix::setCellOff(bool value){ in setCellOff() function
27 inline void ViterbiMatrix::setCellOff(int row,int col,int elem,bool value){ in setCellOff() function
30 this->setCellOff(true); in setCellOff()
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| H A D | hhviterbimatrix.h | 62 void setCellOff(int row,int col,int elem,bool value);
70 void setCellOff(bool value);
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| H A D | hhbacktracemac.cpp | 152 backtrace_matrix.setCellOff(ii, j, elem, true); in backtraceMAC()
154 backtrace_matrix.setCellOff(i, jj, elem, true); in backtraceMAC()
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| H A D | hhviterbirunner.cpp | 304 viterbiMatrix->setCellOff(i, j, elem, true); in exclude_regions()
325 viterbiMatrix->setCellOff(i, j, elem, true); in exclude_template_regions()
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