Searched refs:vGapExtend (Results 1 – 3 of 3) sorted by relevance
/dports/biology/fasta3/fasta-36.3.8/src/ |
H A D | glocal_sse2.c | 73 __m128i vGapExtend; in glocal_sse2_word() local 104 vGapExtend = _mm_insert_epi16 (vGapExtend, gapExtend, 0); in glocal_sse2_word() 105 vGapExtend = _mm_shufflelo_epi16 (vGapExtend, 0); in glocal_sse2_word() 106 vGapExtend = _mm_shuffle_epi32 (vGapExtend, 0); in glocal_sse2_word() 118 vGapExtend = _mm_srli_si128 (vGapExtend, 14); in glocal_sse2_word() 147 vF = _mm_adds_epi16 (vF, vGapExtend); in glocal_sse2_word() 348 __m128i vGapExtend; in glocal_sse2_byte() local 389 vGapExtend = _mm_insert_epi16 (vGapExtend, dup, 0); in glocal_sse2_byte() 390 vGapExtend = _mm_shufflelo_epi16 (vGapExtend, 0); in glocal_sse2_byte() 391 vGapExtend = _mm_shuffle_epi32 (vGapExtend, 0); in glocal_sse2_byte() [all …]
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H A D | global_sse2.c | 70 __m128i vGapExtend; in global_sse2_word() local 97 vGapExtend = _mm_setzero_si128(); /* transfered from Apple Devel smith_waterman_sse2.c fix */ in global_sse2_word() 98 vGapExtend = _mm_insert_epi16 (vGapExtend, gapExtend, 0); in global_sse2_word() 99 vGapExtend = _mm_shufflelo_epi16 (vGapExtend, 0); in global_sse2_word() 100 vGapExtend = _mm_shuffle_epi32 (vGapExtend, 0); in global_sse2_word() 319 __m128i vGapExtend; in global_sse2_byte() local 355 vGapExtend = _mm_setzero_si128(); /* initialize cf Apple Devel smith_waterman_sse2.c */ in global_sse2_byte() 356 vGapExtend = _mm_insert_epi16 (vGapExtend, dup, 0); in global_sse2_byte() 357 vGapExtend = _mm_shufflelo_epi16 (vGapExtend, 0); in global_sse2_byte() 358 vGapExtend = _mm_shuffle_epi32 (vGapExtend, 0); in global_sse2_byte()
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/dports/biology/ugene/ugene-40.1/src/plugins/smith_waterman/src/ |
H A D | SmithWatermanAlgorithmSSE2.cpp | 1037 __m128i vGapExtend = _mm_set1_epi32(0); in calculateMatrixSSE2() local 1051 vGapExtend = _mm_insert_epi16(vGapExtend, gapExtend, 0); in calculateMatrixSSE2() 1052 vGapExtend = _mm_shufflelo_epi16(vGapExtend, 0); in calculateMatrixSSE2() 1053 vGapExtend = _mm_shuffle_epi32(vGapExtend, 0); in calculateMatrixSSE2() 1112 vE = _mm_subs_epi16(vE, vGapExtend); in calculateMatrixSSE2() 1116 vF = _mm_subs_epi16(vF, vGapExtend); in calculateMatrixSSE2() 1157 vF = _mm_subs_epi16(vF, vGapExtend); in calculateMatrixSSE2()
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