1 /*
2    This file is part of the BOLT-LMM linear mixed model software package
3    developed by Po-Ru Loh.  Copyright (C) 2014-2019 Harvard University.
4 
5    This program is free software: you can redistribute it and/or modify
6    it under the terms of the GNU General Public License as published by
7    the Free Software Foundation, either version 3 of the License, or
8    (at your option) any later version.
9 
10    This program is distributed in the hope that it will be useful,
11    but WITHOUT ANY WARRANTY; without even the implied warranty of
12    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
13    GNU General Public License for more details.
14 
15    You should have received a copy of the GNU General Public License
16    along with this program.  If not, see <http://www.gnu.org/licenses/>.
17 */
18 
19 #ifndef RESTRICTSNPSET_HPP
20 #define RESTRICTSNPSET_HPP
21 
22 #include <set>
23 #include <string>
24 
25 #include "SnpInfo.hpp"
26 
27 namespace LMM {
28 
29   class RestrictSnpSet {
30 
31     bool matchID; // either match by ID or by (chrom, physpos)
32     std::set <std::string> keys;
33 
34   public:
35 
36     RestrictSnpSet(const std::string &restrictPartnerFile, bool _matchID, int Nautosomes);
37     std::string makeKey(const SnpInfo &snp) const;
38     bool isAllowed(const SnpInfo &snp) const;
39 
40   };
41 }
42 
43 #endif
44