1<h2><a name="See also">See also</a></h2>
2<table border cellpadding=4 bgcolor="#FFFFF0">
3<tr><th>Program name</th>
4<th>Description</th></tr>
5<tr>
6<td><a href="abiview.html">abiview</a></td>
7<td>Display the trace in an ABI sequencer file</td>
8</tr>
9
10<tr>
11<td><a href="backtranambig.html">backtranambig</a></td>
12<td>Back-translate a protein sequence to ambiguous nucleotide sequence</td>
13</tr>
14
15<tr>
16<td><a href="backtranseq.html">backtranseq</a></td>
17<td>Back-translate a protein sequence to a nucleotide sequence</td>
18</tr>
19
20<tr>
21<td><a href="checktrans.html">checktrans</a></td>
22<td>Report STOP codons and ORF statistics of a protein</td>
23</tr>
24
25<tr>
26<td><a href="entret.html">entret</a></td>
27<td>Retrieve sequence entries from flatfile databases and files</td>
28</tr>
29
30<tr>
31<td><a href="extractalign.html">extractalign</a></td>
32<td>Extract regions from a sequence alignment</td>
33</tr>
34
35<tr>
36<td><a href="infoalign.html">infoalign</a></td>
37<td>Display basic information about a multiple sequence alignment</td>
38</tr>
39
40<tr>
41<td><a href="infoseq.html">infoseq</a></td>
42<td>Display basic information about sequences</td>
43</tr>
44
45<tr>
46<td><a href="plotorf.html">plotorf</a></td>
47<td>Plot potential open reading frames in a nucleotide sequence</td>
48</tr>
49
50<tr>
51<td><a href="prettyseq.html">prettyseq</a></td>
52<td>Write a nucleotide sequence and its translation to file</td>
53</tr>
54
55<tr>
56<td><a href="refseqget.html">refseqget</a></td>
57<td>Get reference sequence</td>
58</tr>
59
60<tr>
61<td><a href="remap.html">remap</a></td>
62<td>Display restriction enzyme binding sites in a nucleotide sequence</td>
63</tr>
64
65<tr>
66<td><a href="seqxref.html">seqxref</a></td>
67<td>Retrieve all database cross-references for a sequence entry</td>
68</tr>
69
70<tr>
71<td><a href="seqxrefget.html">seqxrefget</a></td>
72<td>Retrieve all cross-referenced data for a sequence entry</td>
73</tr>
74
75<tr>
76<td><a href="showalign.html">showalign</a></td>
77<td>Display a multiple sequence alignment in pretty format</td>
78</tr>
79
80<tr>
81<td><a href="showorf.html">showorf</a></td>
82<td>Display a nucleotide sequence and translation in pretty format</td>
83</tr>
84
85<tr>
86<td><a href="showseq.html">showseq</a></td>
87<td>Display sequences with features in pretty format</td>
88</tr>
89
90<tr>
91<td><a href="sixpack.html">sixpack</a></td>
92<td>Display a DNA sequence with 6-frame translation and ORFs</td>
93</tr>
94
95<tr>
96<td><a href="transeq.html">transeq</a></td>
97<td>Translate nucleic acid sequences</td>
98</tr>
99
100<tr>
101<td><a href="variationget.html">variationget</a></td>
102<td>Get sequence variations</td>
103</tr>
104
105<tr>
106<td><a href="whichdb.html">whichdb</a></td>
107<td>Search all sequence databases for an entry and retrieve it</td>
108</tr>
109
110</table>
111