1<h2><a name="See also">See also</a></h2> 2<table border cellpadding=4 bgcolor="#FFFFF0"> 3<tr><th>Program name</th> 4<th>Description</th></tr> 5<tr> 6<td><a href="abiview.html">abiview</a></td> 7<td>Display the trace in an ABI sequencer file</td> 8</tr> 9 10<tr> 11<td><a href="backtranambig.html">backtranambig</a></td> 12<td>Back-translate a protein sequence to ambiguous nucleotide sequence</td> 13</tr> 14 15<tr> 16<td><a href="backtranseq.html">backtranseq</a></td> 17<td>Back-translate a protein sequence to a nucleotide sequence</td> 18</tr> 19 20<tr> 21<td><a href="checktrans.html">checktrans</a></td> 22<td>Report STOP codons and ORF statistics of a protein</td> 23</tr> 24 25<tr> 26<td><a href="entret.html">entret</a></td> 27<td>Retrieve sequence entries from flatfile databases and files</td> 28</tr> 29 30<tr> 31<td><a href="extractalign.html">extractalign</a></td> 32<td>Extract regions from a sequence alignment</td> 33</tr> 34 35<tr> 36<td><a href="infoalign.html">infoalign</a></td> 37<td>Display basic information about a multiple sequence alignment</td> 38</tr> 39 40<tr> 41<td><a href="infoseq.html">infoseq</a></td> 42<td>Display basic information about sequences</td> 43</tr> 44 45<tr> 46<td><a href="plotorf.html">plotorf</a></td> 47<td>Plot potential open reading frames in a nucleotide sequence</td> 48</tr> 49 50<tr> 51<td><a href="prettyseq.html">prettyseq</a></td> 52<td>Write a nucleotide sequence and its translation to file</td> 53</tr> 54 55<tr> 56<td><a href="refseqget.html">refseqget</a></td> 57<td>Get reference sequence</td> 58</tr> 59 60<tr> 61<td><a href="remap.html">remap</a></td> 62<td>Display restriction enzyme binding sites in a nucleotide sequence</td> 63</tr> 64 65<tr> 66<td><a href="seqxref.html">seqxref</a></td> 67<td>Retrieve all database cross-references for a sequence entry</td> 68</tr> 69 70<tr> 71<td><a href="seqxrefget.html">seqxrefget</a></td> 72<td>Retrieve all cross-referenced data for a sequence entry</td> 73</tr> 74 75<tr> 76<td><a href="showalign.html">showalign</a></td> 77<td>Display a multiple sequence alignment in pretty format</td> 78</tr> 79 80<tr> 81<td><a href="showorf.html">showorf</a></td> 82<td>Display a nucleotide sequence and translation in pretty format</td> 83</tr> 84 85<tr> 86<td><a href="showseq.html">showseq</a></td> 87<td>Display sequences with features in pretty format</td> 88</tr> 89 90<tr> 91<td><a href="sixpack.html">sixpack</a></td> 92<td>Display a DNA sequence with 6-frame translation and ORFs</td> 93</tr> 94 95<tr> 96<td><a href="transeq.html">transeq</a></td> 97<td>Translate nucleic acid sequences</td> 98</tr> 99 100<tr> 101<td><a href="variationget.html">variationget</a></td> 102<td>Get sequence variations</td> 103</tr> 104 105<tr> 106<td><a href="whichdb.html">whichdb</a></td> 107<td>Search all sequence databases for an entry and retrieve it</td> 108</tr> 109 110</table> 111