1Retrieve all database cross-references for a sequence entry
2Version: EMBOSS:6.6.0.0
3
4   Standard (Mandatory) qualifiers:
5  [-sequence]          seqall     Sequence(s) filename and optional format, or
6                                  reference (input USA)
7  [-outfile]           outfile    [*.seqxref] Output file name
8
9   Additional (Optional) qualifiers: (none)
10   Advanced (Unprompted) qualifiers: (none)
11   Associated qualifiers:
12
13   "-sequence" associated qualifiers
14   -sbegin1            integer    Start of each sequence to be used
15   -send1              integer    End of each sequence to be used
16   -sreverse1          boolean    Reverse (if DNA)
17   -sask1              boolean    Ask for begin/end/reverse
18   -snucleotide1       boolean    Sequence is nucleotide
19   -sprotein1          boolean    Sequence is protein
20   -slower1            boolean    Make lower case
21   -supper1            boolean    Make upper case
22   -scircular1         boolean    Sequence is circular
23   -squick1            boolean    Read id and sequence only
24   -sformat1           string     Input sequence format
25   -iquery1            string     Input query fields or ID list
26   -ioffset1           integer    Input start position offset
27   -sdbname1           string     Database name
28   -sid1               string     Entryname
29   -ufo1               string     UFO features
30   -fformat1           string     Features format
31   -fopenfile1         string     Features file name
32
33   "-outfile" associated qualifiers
34   -odirectory2        string     Output directory
35
36   General qualifiers:
37   -auto               boolean    Turn off prompts
38   -stdout             boolean    Write first file to standard output
39   -filter             boolean    Read first file from standard input, write
40                                  first file to standard output
41   -options            boolean    Prompt for standard and additional values
42   -debug              boolean    Write debug output to program.dbg
43   -verbose            boolean    Report some/full command line options
44   -help               boolean    Report command line options and exit. More
45                                  information on associated and general
46                                  qualifiers can be found with -help -verbose
47   -warning            boolean    Report warnings
48   -error              boolean    Report errors
49   -fatal              boolean    Report fatal errors
50   -die                boolean    Report dying program messages
51   -version            boolean    Report version number and exit
52
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