1Retrieve all database cross-references for a sequence entry 2Version: EMBOSS:6.6.0.0 3 4 Standard (Mandatory) qualifiers: 5 [-sequence] seqall Sequence(s) filename and optional format, or 6 reference (input USA) 7 [-outfile] outfile [*.seqxref] Output file name 8 9 Additional (Optional) qualifiers: (none) 10 Advanced (Unprompted) qualifiers: (none) 11 Associated qualifiers: 12 13 "-sequence" associated qualifiers 14 -sbegin1 integer Start of each sequence to be used 15 -send1 integer End of each sequence to be used 16 -sreverse1 boolean Reverse (if DNA) 17 -sask1 boolean Ask for begin/end/reverse 18 -snucleotide1 boolean Sequence is nucleotide 19 -sprotein1 boolean Sequence is protein 20 -slower1 boolean Make lower case 21 -supper1 boolean Make upper case 22 -scircular1 boolean Sequence is circular 23 -squick1 boolean Read id and sequence only 24 -sformat1 string Input sequence format 25 -iquery1 string Input query fields or ID list 26 -ioffset1 integer Input start position offset 27 -sdbname1 string Database name 28 -sid1 string Entryname 29 -ufo1 string UFO features 30 -fformat1 string Features format 31 -fopenfile1 string Features file name 32 33 "-outfile" associated qualifiers 34 -odirectory2 string Output directory 35 36 General qualifiers: 37 -auto boolean Turn off prompts 38 -stdout boolean Write first file to standard output 39 -filter boolean Read first file from standard input, write 40 first file to standard output 41 -options boolean Prompt for standard and additional values 42 -debug boolean Write debug output to program.dbg 43 -verbose boolean Report some/full command line options 44 -help boolean Report command line options and exit. More 45 information on associated and general 46 qualifiers can be found with -help -verbose 47 -warning boolean Report warnings 48 -error boolean Report errors 49 -fatal boolean Report fatal errors 50 -die boolean Report dying program messages 51 -version boolean Report version number and exit 52 53