|
Name |
|
Date |
Size |
#Lines |
LOC |
| .. | | 07-May-2022 | - |
| cvsscripts/ | H | 15-Jul-2013 | - | 300 | 195 |
| README | H A D | 31-Oct-2005 | 1.4 KiB | 49 | 37 |
| acdcompare.csh | H A D | 02-Oct-2009 | 440 | 16 | 12 |
| acdprettyall.csh | H A D | 31-Jan-2007 | 180 | 12 | 9 |
| acdstats.pl | H A D | 13-Oct-2009 | 2.2 KiB | 110 | 86 |
| acdsyntax.csh | H A D | 18-Feb-2010 | 393 | 11 | 7 |
| acdsyntax.pl | H A D | 23-Jun-2011 | 26.5 KiB | 1,354 | 1,140 |
| acdtoelixir.pl | H A D | 29-Jun-2013 | 6.2 KiB | 272 | 233 |
| acdvalidreport.pl | H A D | 06-Jul-2011 | 3.5 KiB | 102 | 88 |
| autodoc.csh | H A D | 02-Oct-2009 | 225 | 14 | 4 |
| autodoc.pl | H A D | 22-Jul-2012 | 40.9 KiB | 1,532 | 956 |
| bioflat_index_obda.pl | H A D | 11-Jul-2012 | 3.2 KiB | 119 | 56 |
| bundlewin.c | H A D | 14-Jul-2012 | 64.3 KiB | 3,370 | 2,316 |
| bundlewin.csh | H A D | 14-Jul-2012 | 1.8 KiB | 78 | 42 |
| checkc.pl | H A D | 05-Aug-2004 | 1,001 | 40 | 37 |
| cleannew.pl | H A D | 09-Jul-2009 | 3.8 KiB | 130 | 104 |
| codestandard.pl | H A D | 05-Aug-2004 | 502 | 26 | 22 |
| compembassy.c | H A D | 20-Oct-2011 | 6.4 KiB | 300 | 189 |
| createnewdocumentation.pl | H A D | 12-Jul-2006 | 2.1 KiB | 72 | 41 |
| currentsourceforge.csh | H A D | 07-Mar-2006 | 537 | 16 | 8 |
| datadocsingle.csh | H A D | 25-Aug-2011 | 277 | 16 | 9 |
| dbfetch.pl | H A D | 05-Jul-2012 | 4.8 KiB | 222 | 209 |
| dbilist.pl | H A D | 05-Aug-2004 | 2.7 KiB | 110 | 79 |
| dbindex.csh | H A D | 15-Jul-2013 | 1.5 KiB | 63 | 37 |
| dbitest.pl | H A D | 19-May-2006 | 4.7 KiB | 202 | 154 |
| dbobda.pl | H A D | 11-Jul-2012 | 1.2 KiB | 43 | 23 |
| dbxref.pl | H A D | 08-Jul-2009 | 2.8 KiB | 126 | 116 |
| docindex.pl | H A D | 22-Aug-2007 | 4.5 KiB | 166 | 146 |
| docnucleusindex.pl | H A D | 22-Aug-2007 | 3.4 KiB | 134 | 114 |
| docsingle.csh | H A D | 11-Dec-2009 | 268 | 18 | 12 |
| dopretty.csh | H A D | 01-Nov-2005 | 150 | 13 | 7 |
| dovalid.csh | H A D | 17-Jun-2011 | 394 | 17 | 9 |
| dovalidclean.pl | H A D | 08-Feb-2006 | 424 | 21 | 16 |
| drcatvalid.pl | H A D | 10-Nov-2011 | 9.5 KiB | 419 | 390 |
| eclipse-emboss-codestyle.xml | H A D | 18-May-2011 | 16 KiB | 156 | 155 |
| edata.i | H A D | 29-Aug-2002 | 2 KiB | 61 | 48 |
| edata.is | H A D | 05-Aug-2004 | 22.7 KiB | 606 | 537 |
| edata.it | H A D | 16-Jul-2001 | 973 | 31 | 29 |
| edithtml.pl | H A D | 21-Jan-2005 | 7.7 KiB | 233 | 135 |
| efunc.i | H A D | 06-Aug-2002 | 1.5 KiB | 51 | 46 |
| efunc.is | H A D | 05-Aug-2004 | 13.7 KiB | 374 | 300 |
| efunc.it | H A D | 06-Aug-2002 | 969 | 31 | 29 |
| efuncrel.pl | H A D | 14-Nov-2008 | 503 | 29 | 23 |
| eiprscan-sort.pl | H A D | 14-Nov-2008 | 659 | 31 | 23 |
| embassytestconfig.pl | H A D | 17-Jun-2011 | 2.7 KiB | 119 | 104 |
| embllocations.pl | H A D | 08-Jul-2009 | 3.4 KiB | 161 | 154 |
| emblmini.pl | H A D | 14-Jul-2008 | 1,013 | 39 | 36 |
| emblsplit.pl | H A D | 31-Jan-2007 | 650 | 37 | 29 |
| embossdatacheck.pl | H A D | 27-Sep-2011 | 2.7 KiB | 128 | 90 |
| embossdatadoc.pl | H A D | 15-May-2012 | 26.5 KiB | 999 | 845 |
| embossdoc.csh | H A D | 09-Oct-2009 | 4.4 KiB | 202 | 146 |
| embossdoc.pl | H A D | 19-Oct-2011 | 68.5 KiB | 2,574 | 2,161 |
| embossdoccategories.pl | H A D | 05-Aug-2004 | 2.1 KiB | 68 | 54 |
| embossdoccatreport.pl | H A D | 05-Aug-2004 | 646 | 33 | 27 |
| embossdoccheck.pl | H A D | 27-Sep-2011 | 1.2 KiB | 55 | 36 |
| embossdocreport.pl | H A D | 27-Sep-2011 | 3.6 KiB | 197 | 168 |
| fixdeprecated.csh | H A D | 21-May-2008 | 150 | 11 | 8 |
| fixdeprecated.pl | H A D | 02-Oct-2009 | 5.3 KiB | 227 | 186 |
| knowntypevalid.pl | H A D | 10-Jul-2006 | 912 | 39 | 36 |
| logreport1.pl | H A D | 05-Aug-2004 | 980 | 32 | 26 |
| makeChangelog.pl | H A D | 02-Oct-2009 | 2.7 KiB | 151 | 93 |
| makeMake.pl | H A D | 03-Oct-2011 | 3.2 KiB | 158 | 126 |
| makeadmin.csh | H A D | 22-Aug-2007 | 616 | 27 | 4 |
| makeam.c | H A D | 20-Feb-2005 | 5.9 KiB | 296 | 192 |
| makecheck.csh | H A D | 02-Oct-2009 | 721 | 33 | 21 |
| makeexample.pl | H A D | 15-Jul-2013 | 32.6 KiB | 1,097 | 696 |
| makefilestest.pl | H A D | 08-Jul-2009 | 4.9 KiB | 201 | 174 |
| makehistory.pl | H A D | 05-Aug-2004 | 3.8 KiB | 136 | 78 |
| makeone.csh | H A D | 21-Apr-2012 | 1.2 KiB | 47 | 31 |
| makeoneembassy.csh | H A D | 17-Jun-2011 | 1.3 KiB | 50 | 38 |
| makeonetest.csh | H A D | 07-Feb-2011 | 1 KiB | 39 | 24 |
| makeonly.csh | H A D | 02-Oct-2009 | 437 | 23 | 12 |
| makesummary.pl | H A D | 27-Sep-2011 | 5.3 KiB | 243 | 193 |
| mkembassy.c | H A D | 20-Oct-2011 | 5.1 KiB | 225 | 143 |
| mygprof.csh | H A D | 26-Feb-2007 | 258 | 15 | 7 |
| newdatatype.pl | H A D | 15-Jul-2013 | 16.7 KiB | 718 | 475 |
| oboindex.csh | H A D | 15-Jul-2013 | 1 KiB | 36 | 28 |
| purify.pl | H A D | 05-Aug-2004 | 1.4 KiB | 87 | 74 |
| qatest.bat | H A D | 14-Jul-2012 | 299 | 10 | 7 |
| qatest.pl | H A D | 15-Jul-2013 | 32.5 KiB | 1,251 | 885 |
| qatomemtest.pl | H A D | 17-Apr-2007 | 1.1 KiB | 58 | 48 |
| sections.pl | H A D | 02-Oct-2009 | 1.9 KiB | 86 | 70 |
| serverentrez.pl | H A D | 15-Jul-2013 | 9.1 KiB | 335 | 294 |
| soextract.pl | H A D | 14-Nov-2008 | 1.2 KiB | 57 | 52 |
| sourceforgevalid.pl | H A D | 08-Feb-2006 | 6.2 KiB | 211 | 184 |
| taxtestdata.pl | H A D | 10-Mar-2011 | 1 KiB | 48 | 39 |
| testcoverage.pl | H A D | 09-Jun-2011 | 7.9 KiB | 305 | 256 |
| testft.csh | H A D | 21-Jan-2005 | 486 | 20 | 10 |
| testgroups.pl | H A D | 22-Jun-2011 | 4.6 KiB | 185 | 152 |
| third.pl | H A D | 05-Aug-2004 | 3.6 KiB | 171 | 139 |
| unused_functions.pl | H A D | 05-Aug-2004 | 1 KiB | 46 | 31 |
| valgrind.pl | H A D | 15-Jul-2013 | 8.5 KiB | 315 | 269 |
| valgrindreport.pl | H A D | 17-Jun-2011 | 5.8 KiB | 242 | 199 |
| wikiall.pl | H A D | 15-Jul-2013 | 3.2 KiB | 106 | 99 |
| wikify.pl | H A D | 08-Nov-2012 | 7.7 KiB | 281 | 216 |
| wikifyapps.pl | H A D | 22-Jul-2011 | 491 | 33 | 20 |
| wikifybook.pl | H A D | 19-Apr-2011 | 4.2 KiB | 129 | 117 |
| wikifyembassy.pl | H A D | 19-Apr-2011 | 2 KiB | 73 | 63 |
| wikifyhtml.pl | H A D | 28-Jul-2011 | 4.6 KiB | 152 | 138 |
| wikifyseealso.pl | H A D | 19-Apr-2011 | 242 | 18 | 11 |
| wikifytable.pl | H A D | 19-Apr-2011 | 1.1 KiB | 48 | 41 |
| wikifyusage.pl | H A D | 19-Apr-2011 | 1.6 KiB | 47 | 40 |
| winchkexes.c | H A D | 14-Jun-2011 | 6.3 KiB | 296 | 180 |
README
1embossdoc.csh
2 Script to run embossdatadoc.pl and embossdoc.pl
3 These create the SRS data for browsing the ajax, nucleus and application
4 source routine code.
5
6embossdatadoc.pl
7 Script run by embossdoc.csh.
8 Createsthe edata SRS data for browsing the ajax, nucleus and
9 application source routine code.
10
11embossdoc.pl
12 Script run by embossdoc.csh.
13 Createsthe efunc SRS data for browsing the ajax, nucleus and
14 application source routine code.
15
16autodoc
17 makes the Apps/index.html web page
18 creates the command lines include files
19 warns of missing documentation pages
20
21edithtml.pl
22 Simple script for setting up the html doc for a new application
23 Like autodoc in many ways except that it only works on the
24 single applications files and asks before doing many operations
25 especially cvs commits.
26
27doctree
28
29 Converts the EMBOSS Web pages on the HGMP Web server to a
30 version that is easy to distribute and can be included in the
31 CVS source tree
32
33 Files are copied, replaced or converted. If they would change the
34 current CVS version of the file then the change is committed.
35
36 Copied:
37 Selected files (*.gif) are simply copied
38
39 Replaced:
40 Header files of various kinds are replaced by an alternative version
41 Include file (*.ihelp *.itable *.iauth) are merged with the
42 .shtml files
43
44 Converted:
45 For most HTML files:
46 #include files are replaced with the full file contents
47 Links are made relative even if they were absolute
48
49