1@HD	VN:1.6	SO:coordinate
2@SQ	SN:c1	LN:10
3@CO
4@CO	Copyright (c) 2014,2018 Genome Research Ltd.
5@CO
6@CO	Permission is hereby granted, free of charge, to any person obtaining
7@CO	a copy of this software and associated documentation files (the
8@CO	"Software"), to deal in the Software without restriction, including
9@CO	without limitation the rights to use, copy, modify, merge, publish,
10@CO	distribute, sublicense, and/or sell copies of the Software, and to
11@CO	permit persons to whom the Software is furnished to do so, subject
12@CO	to the following conditions:
13@CO
14@CO	The above copyright notice and this permission notice shall be included
15@CO	in all copies or substantial portions of the Software.
16@CO
17@CO	THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
18@CO	OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
19@CO	MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
20@CO	IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY
21@CO	CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT,
22@CO	TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE
23@CO	SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
24@CO
25@CO	Ref  AACCG******CGGTT
26@CO	     12345      67890  Depadded base numbering
27@CO	                    1
28@CO
29@CO	s0a  AACCG      CGGTT  10M
30@CO	s0b  AACCG      CGGTT  10M
31@CO	s0c  AACCG      CGGTT  10M
32@CO	s0d  AACCG      CGGTT  10M
33@CO	s1   AACCGGTTAACCGGTT  5M 6I 5M
34@CO	s2   AACCG*TTAA*CGGTT  5M 1P 4I 1P 5M
35@CO	s3   AACCGGTT***CGGTT  5M 3I 3P 5M
36@CO	s4   AACCG***AACCGGTT  5M 3P 3I 5M
37@CO	s5   AACC***TA***GGTT  4M 1D 2P 2I 2P 1D 4M
38@CO	s6   AA***GTTAAC***TT  2M 3D 6I 3D 2M
39@CO	s7   AACC*      *GGTT  4M 2D 4M
40@CO	s8   *******TA*******  5D 2P 2I 2P 5D
41@CO	s9       G**TA**       1M 2P 2I 2P
42@CO
43s0a	0	c1	1	0	10M	*	0	0	AACCGCGGTT	*
44s0b	0	c1	1	0	10M	*	0	0	AACCGCGGTT	*
45s0c	0	c1	1	0	10M	*	0	0	AACCGCGGTT	*
46s0d	0	c1	1	0	10M	*	0	0	AACCGCGGTT	*
47s1	0	c1	1	0	5M6I5M	*	0	0	AACCGGTTAACCGGTT	*
48s2	0	c1	1	0	5M1P4I1P5M	*	0	0	AACCGTTAACGGTT	*
49s3	0	c1	1	0	5M3I3P5M	*	0	0	AACCGGTTCGGTT	*
50s4	0	c1	1	0	5M3P3I5M	*	0	0	AACCGAACCGGTT	*
51s5	0	c1	1	0	4M1D2P2I2P1D4M	*	0	0	AACCTAGGTT	*
52s6	0	c1	1	0	2M3D6I3D2M	*	0	0	AAGTTAACTT	*
53s7	0	c1	1	0	4M2D4M	*	0	0	AACCGGTT	*
54s8	0	c1	1	0	5D2P2I2P5D	*	0	0	TA	*
55s9	0	c1	5	0	1M2P2I2P	*	0	0	GTA	*
56