1 /*  This file is part of Jellyfish.
2 
3     This work is dual-licensed under 3-Clause BSD License or GPL 3.0.
4     You can choose between one of them if you use this work.
5 
6 `SPDX-License-Identifier: BSD-3-Clause OR  GPL-3.0`
7 */
8 
9 #ifndef __JELLYFISH_JELLYFISH_HPP__
10 #define __JELLYFISH_JELLYFISH_HPP__
11 
12 #include <stdint.h>
13 #include <jellyfish/mer_dna.hpp>
14 #include <jellyfish/hash_counter.hpp>
15 #include <jellyfish/text_dumper.hpp>
16 #include <jellyfish/binary_dumper.hpp>
17 
18 typedef jellyfish::cooperative::hash_counter<jellyfish::mer_dna> mer_hash;
19 typedef mer_hash::array mer_array;
20 typedef jellyfish::text_dumper<mer_array> text_dumper;
21 typedef jellyfish::text_reader<jellyfish::mer_dna, uint64_t> text_reader;
22 typedef jellyfish::binary_dumper<mer_array> binary_dumper;
23 typedef jellyfish::binary_reader<jellyfish::mer_dna, uint64_t> binary_reader;
24 typedef jellyfish::binary_query_base<jellyfish::mer_dna, uint64_t> binary_query;
25 typedef jellyfish::binary_writer<jellyfish::mer_dna, uint64_t> binary_writer;
26 typedef jellyfish::text_writer<jellyfish::mer_dna, uint64_t> text_writer;
27 
28 
29 #endif /* __JELLYFISH_JELLYFISH_HPP__ */
30