1 /* This file is part of Jellyfish. 2 3 This work is dual-licensed under 3-Clause BSD License or GPL 3.0. 4 You can choose between one of them if you use this work. 5 6 `SPDX-License-Identifier: BSD-3-Clause OR GPL-3.0` 7 */ 8 9 #ifndef __JELLYFISH_JELLYFISH_HPP__ 10 #define __JELLYFISH_JELLYFISH_HPP__ 11 12 #include <stdint.h> 13 #include <jellyfish/mer_dna.hpp> 14 #include <jellyfish/hash_counter.hpp> 15 #include <jellyfish/text_dumper.hpp> 16 #include <jellyfish/binary_dumper.hpp> 17 18 typedef jellyfish::cooperative::hash_counter<jellyfish::mer_dna> mer_hash; 19 typedef mer_hash::array mer_array; 20 typedef jellyfish::text_dumper<mer_array> text_dumper; 21 typedef jellyfish::text_reader<jellyfish::mer_dna, uint64_t> text_reader; 22 typedef jellyfish::binary_dumper<mer_array> binary_dumper; 23 typedef jellyfish::binary_reader<jellyfish::mer_dna, uint64_t> binary_reader; 24 typedef jellyfish::binary_query_base<jellyfish::mer_dna, uint64_t> binary_query; 25 typedef jellyfish::binary_writer<jellyfish::mer_dna, uint64_t> binary_writer; 26 typedef jellyfish::text_writer<jellyfish::mer_dna, uint64_t> text_writer; 27 28 29 #endif /* __JELLYFISH_JELLYFISH_HPP__ */ 30