sequence/unit_test/combined_annot.asn

Seq-annot ::= {
  data ftable {
    {
      data gene {
        locus "COPG2",
        desc "coatomer protein complex, subunit gamma 2",
        syn {
          "2-COP"
        }
      },
      partial TRUE,
      location int {
        from 68178921,
        to 68386440,
        strand minus,
        id other {
          accession "NT_007933",
          version 15
        }
      },
      dbxref {
        {
          db "GeneID",
          tag id 26958
        },
        {
          db "HGNC",
          tag id 2237
        },
        {
          db "MIM",
          tag id 604355
        }
      }
    },
    {
      data rna {
        type mRNA,
        ext name "coatomer protein complex, subunit gamma 2"
      },
      partial TRUE,
      except TRUE,
      comment "The RefSeq transcript has 3 non-frameshifting indels compared
 to this genomic sequence",
      product whole other {
        accession "NM_012133",
        version 4
      },
      location packed-int {
        {
          from 68386314,
          to 68386440,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68385164,
          to 68385216,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68384531,
          to 68384611,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68380649,
          to 68380720,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68370551,
          to 68370630,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68334703,
          to 68334778,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68331257,
          to 68331349,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68329865,
          to 68329951,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68328668,
          to 68328823,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          },
          fuzz-from lim lt
        },
        {
          from 68181245,
          to 68181343,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          },
          fuzz-to lim gt
        },
        {
          from 68180368,
          to 68180506,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68179958,
          to 68180055,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          },
          fuzz-from lim lt
        },
        {
          from 68178921,
          to 68179487,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          },
          fuzz-to lim gt
        }
      },
      qual {
        {
          qual "inference",
          val "similar to RNA sequence, mRNA (same species):RefSeq:NM_012133.4"
        }
      },
      except-text "annotated by transcript or proteomic data"
    },
    {
      data rna {
        type mRNA,
        ext name "coatomer protein complex, subunit gamma 2"
      },
      partial TRUE,
      except TRUE,
      comment "The RefSeq transcript has 17 substitutions, 3 frameshifts, 8
 non-frameshifting indels compared to this genomic sequence",
      product whole other {
        accession "NM_012133",
        version 4
      },
      location packed-int {
        {
          from 68386314,
          to 68386440,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68385164,
          to 68385216,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68384531,
          to 68384611,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68380649,
          to 68380720,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68370551,
          to 68370630,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68334703,
          to 68334778,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68331257,
          to 68331349,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68329865,
          to 68329951,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68328668,
          to 68328823,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          },
          fuzz-from lim lt
        },
        {
          from 68320191,
          to 68320199,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          },
          fuzz-from lim lt,
          fuzz-to lim gt
        },
        {
          from 68309996,
          to 68310008,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          },
          fuzz-to lim gt
        },
        {
          from 68306565,
          to 68306573,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          },
          fuzz-from lim lt,
          fuzz-to lim gt
        },
        {
          from 68302047,
          to 68302055,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          },
          fuzz-from lim lt,
          fuzz-to lim gt
        },
        {
          from 68288030,
          to 68288038,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          },
          fuzz-to lim gt
        },
        {
          from 68186540,
          to 68186560,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68185146,
          to 68185170,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          },
          fuzz-from lim lt
        },
        {
          from 68181245,
          to 68181362,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          },
          fuzz-to lim gt
        },
        {
          from 68180368,
          to 68180506,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68179957,
          to 68180055,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68178921,
          to 68179489,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        }
      },
      qual {
        {
          qual "inference",
          val "similar to RNA sequence, mRNA (same species):RefSeq:NM_012133.4"
        }
      },
      except-text "annotated by transcript or proteomic data"
    },
    {
      data rna {
        type mRNA,
        ext name "coatomer protein complex, subunit gamma 2"
      },
      partial TRUE,
      except TRUE,
      comment "The RefSeq transcript has 17 substitutions, 3 frameshifts, 8
 non-frameshifting indels compared to this genomic sequence",
      product whole other {
        accession "NM_012133",
        version 4
      },
      location packed-int {
        {
          from 68386314,
          to 68386440,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68385164,
          to 68385216,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68384531,
          to 68384611,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68380649,
          to 68380720,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68370551,
          to 68370630,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68334703,
          to 68334778,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68331257,
          to 68331349,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68329865,
          to 68329951,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68328668,
          to 68328823,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          },
          fuzz-from lim lt
        },
        {
          from 68320191,
          to 68320199,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          },
          fuzz-from lim lt,
          fuzz-to lim gt
        },
        {
          from 68309996,
          to 68310008,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          },
          fuzz-to lim gt
        },
        {
          from 68306565,
          to 68306573,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          },
          fuzz-from lim lt,
          fuzz-to lim gt
        },
        {
          from 68302047,
          to 68302055,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          },
          fuzz-from lim lt,
          fuzz-to lim gt
        },
        {
          from 68288030,
          to 68288038,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          },
          fuzz-to lim gt
        },
        {
          from 68186540,
          to 68186560,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68185146,
          to 68185170,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          },
          fuzz-from lim lt
        },
        {
          from 68181245,
          to 68181362,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          },
          fuzz-to lim gt
        },
        {
          from 68180368,
          to 68180506,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68179957,
          to 68180055,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68178921,
          to 68179489,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        }
      },
      qual {
        {
          qual "inference",
          val "similar to RNA sequence, mRNA (same species):RefSeq:NM_012133.4"
        }
      },
      except-text "annotated by transcript or proteomic data"
    },
    {
      data cdregion {
        code {
          id 1
        }
      },
      partial TRUE,
      except TRUE,
      product whole gi 109134349,
      location packed-int {
        {
          from 68386314,
          to 68386350,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68385164,
          to 68385216,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68384531,
          to 68384611,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68380649,
          to 68380720,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68370551,
          to 68370630,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68334703,
          to 68334778,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68331257,
          to 68331349,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68329865,
          to 68329951,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68328668,
          to 68328823,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          },
          fuzz-from lim lt
        },
        {
          from 68181245,
          to 68181343,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          },
          fuzz-to lim gt
        },
        {
          from 68180368,
          to 68180506,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68179958,
          to 68180055,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          },
          fuzz-from lim lt
        },
        {
          from 68179359,
          to 68179487,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          },
          fuzz-to lim gt
        }
      },
      qual {
        {
          qual "inference",
          val "similar to AA sequence (same species):RefSeq:NP_036265.3"
        }
      },
      xref {
        {
          data prot {
            name {
              "coatomer subunit gamma-2"
            }
          }
        }
      },
      except-text "annotated by transcript or proteomic data"
    },
    {
      data cdregion {
        code {
          id 1
        }
      },
      partial TRUE,
      except TRUE,
      comment "The RefSeq protein has 3 frameshifts, 1 non-frameshifting indel
 compared to this genomic sequence",
      product whole gi 109134349,
      location packed-int {
        {
          from 68386314,
          to 68386350,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68385164,
          to 68385216,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68384531,
          to 68384611,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68380649,
          to 68380720,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68370551,
          to 68370630,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68334703,
          to 68334778,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68331257,
          to 68331349,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68329865,
          to 68329951,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68328668,
          to 68328823,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          },
          fuzz-from lim lt
        },
        {
          from 68320191,
          to 68320199,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          },
          fuzz-from lim lt,
          fuzz-to lim gt
        },
        {
          from 68309996,
          to 68310008,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          },
          fuzz-to lim gt
        },
        {
          from 68306565,
          to 68306573,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          },
          fuzz-from lim lt,
          fuzz-to lim gt
        },
        {
          from 68302047,
          to 68302055,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          },
          fuzz-from lim lt,
          fuzz-to lim gt
        },
        {
          from 68288030,
          to 68288038,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          },
          fuzz-to lim gt
        },
        {
          from 68186540,
          to 68186560,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68185146,
          to 68185170,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          },
          fuzz-from lim lt
        },
        {
          from 68181245,
          to 68181362,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          },
          fuzz-to lim gt
        },
        {
          from 68180368,
          to 68180506,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68179957,
          to 68180055,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68179359,
          to 68179489,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        }
      },
      qual {
        {
          qual "inference",
          val "similar to AA sequence (same species):RefSeq:NP_036265.3"
        }
      },
      xref {
        {
          data prot {
            name {
              "coatomer subunit gamma-2"
            }
          }
        }
      },
      except-text "annotated by transcript or proteomic data"
    },
    {
      data cdregion {
        code {
          id 1
        }
      },
      partial TRUE,
      except TRUE,
      comment "The RefSeq protein has 3 frameshifts, 1 non-frameshifting indel
 compared to this genomic sequence",
      product whole gi 109134349,
      location packed-int {
        {
          from 68386314,
          to 68386350,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68385164,
          to 68385216,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68384531,
          to 68384611,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68380649,
          to 68380720,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68370551,
          to 68370630,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68334703,
          to 68334778,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68331257,
          to 68331349,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68329865,
          to 68329951,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68328668,
          to 68328823,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          },
          fuzz-from lim lt
        },
        {
          from 68320191,
          to 68320199,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          },
          fuzz-from lim lt,
          fuzz-to lim gt
        },
        {
          from 68309996,
          to 68310008,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          },
          fuzz-to lim gt
        },
        {
          from 68306565,
          to 68306573,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          },
          fuzz-from lim lt,
          fuzz-to lim gt
        },
        {
          from 68302047,
          to 68302055,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          },
          fuzz-from lim lt,
          fuzz-to lim gt
        },
        {
          from 68288030,
          to 68288038,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          },
          fuzz-to lim gt
        },
        {
          from 68186540,
          to 68186560,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68185146,
          to 68185170,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          },
          fuzz-from lim lt
        },
        {
          from 68181245,
          to 68181362,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          },
          fuzz-to lim gt
        },
        {
          from 68180368,
          to 68180506,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68179957,
          to 68180055,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        },
        {
          from 68179359,
          to 68179489,
          strand minus,
          id other {
            accession "NT_007933",
            version 15
          }
        }
      },
      qual {
        {
          qual "inference",
          val "similar to AA sequence (same species):RefSeq:NP_036265.3"
        }
      },
      xref {
        {
          data prot {
            name {
              "coatomer subunit gamma-2"
            }
          }
        }
      },
      except-text "annotated by transcript or proteomic data"
    }
  }
}