1#NEXUS 2 3 4BEGIN DATA; 5DIMENSIONS NTAX=32 NCHAR=2147; 6 7[!These ribosomal sequences are those used in: 8 9Lake, J.A. 1988. Origin of the eukaryotic nucleus determined by rate-invariant analysis of rRNA sequences. Nature, 331:184-186. 10 11Thanks to James Lake for supplying these data, March 1990. 12 13The two trees in the file are the most parsimonious trees found. 14 15] 16FORMAT DATATYPE=DNA MISSING=? GAP=- INTERLEAVE ;OPTIONS MSTAXA=UNCERTAIN IGNORE=UNINFORM ; 17 18MATRIX 19 20[ 10 20 30 40 50 60 70 80 90 100] 21[ . . . . . . . . . .] 22 23Homo_sapiens --------TAC-----CTGGTTGATCCTGCC---AGTAG-CATATGCTTGTCTCAAAGATACCCACTCCC-----GACC-CGGGGAGGTAGTGACGAAAA [77] 24Rattus_norvegicus --------TAC-----CTGGTTGATCCTGCC---AGTAG-CATATGCTTGTCTCAAAGATACCCACTCCC-----GACC-CGGGGAGGTAGTGACGAAAA [77] 25Xenopus_laevis --------TAC-----CTGGTTGATCCTGCC---AGTAG-CATATGCTTGTCTCAAAGATACCCACTCCC-----GACG-CGGGGAGGTAGTGACGAAAA [77] 26A._salina --------TAC-----CTGGTTGATCCTGCC---AGTAG-CATATGCTTGTCTCAAAGATACCCACTCCC-----AGCA-CGGGGAGGTAGTGACGAAAA [77] 27S._cerevisiae --------TAT-----CTGGTTGATCCTGCC---AGTAGTCATATGCTTGTCTCAAAGATACCCAATCCT-----AATT-CAGGGAGGTAGTGACAATAA [78] 28P.MICA ---------AT-----CTGGTTGATCCTGCC---AGTAGTCATATGCTTGTCTCAAAGATACCCAATCCT-----GACA-CAGGGAGGTAGTGACAAGAA [77] 29D.DISC --------TAA-----CTGGTTGATCCTGCC---AGTAGTCATATGCTTGTCTCAAAGATACTCAATCCC-----AATA-CGGGGAAGTAGTGACAATAA [78] 30T.BRUC --------GAT-----CTGGTTGATTCTGCC---AGTAGTCATATGCTTGTTTCAAGGATGCCCAATGTCGAAAAAATA-CGATGAGGCAGCGAAAAGAA [83] 31E.GRAC --------AAT-----CTGGTTGATCCTGCC---AGCAGTCATATGCTTTGTTCAAGGGTGCCCCATGCA-AAGACACT-CTGTGAGGCAGCGACGAACA [82] 32Zea_mays --------TAC-----CTGGTTGATCCTGCC---AGTAGTCATATGCTTGTCTCAAAGATACCCAATCCT-----GACA-CGGGGAGGTAGTGACAATAA [78] 33D._mobilis ------TAACT-----CCGGTTGATCCTGCC---GGTCCCGACCGCTATCGGGGTGGGGTCCGCAATGCG-----GGAAACCGTGACGGGGCCACCCCGA [81] 34S._solfataricus --------ATT-----CCGGTTGATCCTGCC---GGACCCGACCGCTATCGGGGTAGGGTCCCCAATGCG-----CGAAAGCGTGAGGGCGCTACCCCGA [79] 35T._tenax --------AAA-----CCGGTTGATCCTGCC---GGACCTGACCGCTATCGGGGTGGGGTCCGCAATGCG-----GGCAACCGCGACGGGGCCACCCCGA [79] 36M._vannielii --------ATT-----CCGGTTGATCCCGCC---GGAGGCTACTGCTATTGGGGTTCGATCCGCAATGCA-----CGAAAGTGCGACGGGGGGACCCCAA [79] 37MB._formicicum --------AGT-----CCGTTTGATCCTGGC---GGAGGCCACTGCTATTGGGTTTCGATCCGCAATGCA-----CGAAAGTGCGACGGGGGAAACCCAA [79] 38MS._hungatei --------ATT-----CTGGTTGATCCTGCC---AGAGGCCACTGCTATCGGGGTTTGATTTACCATGCG-----GGCAACCGTGATAAGGAAACCCCGA [79] 39H._volacanii --------ATT-----CCGGTTGATCCTGCC---GGAGGTCATTGCTATTGGGGTCCGATTTACACTGCA-----CGCAAGTGCGATAAGGGGACCCCAA [79] 40HC._morrhuae --------ATT-----CCGGTTGATCCTGCC---GGAGGCTATTGCTATCGGGGTCCGATTTACACTGCA-----CGCCAGTGCGATAAGGGGACCCCGA [79] 41H.HALO --------ATT-----CCGGTTGATCCTGCC---GGAGGCCATTGCTATCGGAGTCCGATTTACACTGTA-----CGAAAGTGCGATAAGGGGACTCCGA [79] 42H._cutirubrum --------ATT-----CCGGTTGATCCTGCC---GGAGGCCATTGCTATCGGAGTCCGATTTACACTGTA-----CGAAAGTGCGATAAGGGGACTCCGA [79] 43AN._nidulans --CAAAATGGA-----GAGTTTGATCCTGGCTCAGGAT--GAACGCTGGCGGCGTGC--TCCGCAATGGG-----CGCAAGCCTGACGGAGCAACGCCGC [84] 44HE.CHL ----------------------GATCCTGGCTCAGGAC--GAACGCTGGCGGCATGC--TCCGCAATGGG-----CGAAAGCCTGACGGAGCAATGCCGC [69] 45Bc._subtilis --TTTATCGGA-----GAGTTTGATCCTGGCTCAGGAC--GAACGCTGGCGGCATGC--TCCGCAATGGA-----CGAAAGTCTGACGGAGCAACGCCGC [84] 46MY.CAP ----AAAATGA-----GAGTTTGATCCTGGCTCAGGAT--AAACGCTGGCGGCTGGC--TTCACAATGGA-----CGAAAGTCTGATGAAGCAATGCCGC [82] 47E._coli ---AAATTGAA-----GAGTTTGATCATGGCTCAGATT--GAACGCTGGCGGCAGGC--TGCACAATGGG-----CGCAAGCCTGATGCAGCCATGCCGC [83] 48MYX.XA ---CAATTGGA-----GAGTTTGATCCTGGCTCAGAAC--GAACGCTGGCGGCGTGC--TGCGCAATGGG-----CGAAAGCCTGACGCAGCAACGCCGC [83] 49P.TEST --CGAACTATA-----GAGTTTGATCCTGGCTCAGATT--GAACGCTGGCGGCATGC--TGGACAATGGG-----CGAAAGCCTGATCCAGCAATGCCGC [84] 50AG.TUM -CTCAACTTGA-----GAGTTTGATCCTGGCTCAGAAC--GAACGCTGGCGGCAGGC--TGGACAATGGG-----CGCAAGCCTGATCCAGCCATGCCGC [85] 51DV.DES --TGAACTGGA-----GAGTTTGATTCTGGCTCAGATT--GAACGCTGGCGGCGTGC--TGCGCAATGGG-----CGAAAGCCTGACGCAGCGACGCCGC [84] 52BA.FRG -TTACAACGAA-----GAGTTTGATCCTGGCTCAGGAT--GAACGCTAGCTACAGGC--TGGTCAATGGG-----CGCTAGCCTGAACCAGCCAAGTAGC [85] 53'Zea_mays_(chloroplast)' --CTCAT-GGA-----GAGTTCGATCCTGGCTCAGGAT--GAACGCTGGCGGCATGC--TCCGCAATGGG-----CGAAAGCCTGACGGAGCAATGCCGC [83] 54T.AMIT ATCATAGTCAAAATCTGAGTTTGATCCTGGCTCAGAAG--GAACGCTAGCTATATGC--TGGACAATGGG-----CGAAAGCCCGATCCAGCAATATCGC [91] 55 56[ 110 120 130 140 150 160 170 180 190 200] 57[ . . . . . . . . . .] 58 59Homo_sapiens ATAACA-AT-AC-AGG-------------------ACTCTTTCGAGGCC--CTGTAATTGGAATGAGTCCACTTT-AA---ATCCTTTAACGAGGA-TCC [148] 60Rattus_norvegicus ATAACA-AT-AC-AGG-------------------ACTCTTTCGAGGCC--CTGTAATTGGAATGAGTCCACTTT-AA---ATCCTTTAACGAGGA-TCC [148] 61Xenopus_laevis ATAACA-AT-AC-AGG-------------------ACTCTTTCGAGGCC--CTGTAATTGGAATGAGTACACTTT-AA---ATCCTTTAACGAGGA-TCT [148] 62A._salina ATAACG-AT-GC-AGG-------------------ACTCATCCGAGGCC--CTGTGATTGGAATGAGTACACTTT-AA---ATCCTTTAACGAGGA-TCC [148] 63S._cerevisiae ATAACG-AT-AC-AGG-------------------GCCCATTCG-GGTC--TTGTAATTGGAATGAGTACAATGT-AA---ATACCTTAACGAGGA-ACA [148] 64P.MICA ATAACA-AT-AC-AGG-------------------GCATATCTG---TC--TTGTAATTGGAATGAGTAGAATTT-AA---ATCCCTTTACGAGTA-CCA [145] 65D.DISC ATATCA-AT-AC-CTA-------------------TCCTTTTTG-GAGG----GCAATTGAAATGAACACAAATT-AA---AACTCTTAATTAACA--CA [145] 66T.BRUC ATAGAG-CCGAC-CGT-------------------GCCCTAGTG-CATG--GTTGTTTTCAATGGGGGATACTCA-AACCCATCCAATATCGAGTA-ACA [157] 67E.GRAC GTAGCA-AC-CC-CGTC------------------GGCCTTACG-TGCCGATGGGGCTTGGAATGGACGCTATCC-AA---AGACAGCCGTGAGTA-TCA [155] 68Zea_mays ATAACA-AT-AC-CGG-------------------GCGCGTTAG-TGTC--TGGTAATTGGAATGAGTACAATCT-AA---ATCCCTTAACGAGGA-TCC [148] 69D._mobilis GTGCCC-CC-TT-ACG-------------------GG------G-GCTT--TTCCC-------------CGCTGT-AG---GAAGGCGGGG---GA-ATA [129] 70S._solfataricus GTGCCT-CC-GC-AAG-------------------GA------G-GCTT--TTCCC-------------CGCTCT-AA---AAAGGCGGGG---GA-ATA [127] 71T._tenax GTGCCG-GG-CG-AAG-------------------AGCC---CG-GCTT--TTGCC-------------CGGTGT-AA---GGAGCCGGGC---GA-ATA [130] 72M._vannielii GTGC-T-CA-TGCACA-------------------GCAT---GG-GCTT--TTATC-------------AAGTGT-AA---ACAGCTTGAG---GA-ATA [130] 73MB._formicicum GTGCCA-CT-CTTAAC-------------------GGGG---TG-GCTT--TTCTT-------------AAGTGT-AA---AAAGCTTTTG---GA-ATA [131] 74MS._hungatei GTGC----C-AGCACA-------------------GGCT---GG-CTGT--CCACC--------------AGTGT-AA---ATAACT-GGT---GA-AGA [126] 75H._volacanii GTGCGAGGG-CA-TAT-------------------AGTC---CTCGCTT--TTCTC-------------GACCGT-AA---GGCGGTCGAG---GA-ATA [132] 76HC._morrhuae GTGCGAGGG-CA-TAC-------------------AGTC---CTCGCTT--TTCGT-------------GACCGT-AA---GAAGGTCTCA---GA-ATA [132] 77H.HALO GTGTGAAGG-CA-TAG-------------------AGCC---TTCACTT--TTGTA-------------CACCGT-AA---GGTGGTGCAC---GA-ATA [132] 78H._cutirubrum GTGTGAAGG-CA-TAG-------------------AGCC---TTCACTT--TTGTA-------------CACCGT-AA---GGTGGTGCAC---GA-ATA [132] 79AN._nidulans GTGGGG-GA-GG-AAGGTT--TT-T-GGACTGTAAACCC---CT-TTTC--TCAGG-------------GAAGAA-GA---AAG---------------- [138] 80HE.CHL GTGGGG-GA-TG-AAGGTC--TT-C-GGATTGTAAACCC---TT-GTCT--TCGGG-------------GAAGAA------------GTT---------- [121] 81Bc._subtilis GTGAGT-GA-TG-AAGGTT--TT-C-GGATCGTAAAGCT---CT-GTTG--TTAGG-------------GAAGAA-CA---AGTACCGTTC---GA-ATA [150] 82MY.CAP GTGAGT-GA-TG-ACGGCC--TT-C-GGGTTGTAAAGCT---CT-GTTG--TAAGG-------------GAAGAA-AA---AATAGAGTAG---GA-A-A [147] 83E._coli GTGTAT-GA-AG-AAGGCC--TT-C-GGGTTGTAAAGTA---CT-TTCA--GCGGG-------------GAGGAAGGG---AGTAAAGTT-----A-ATA [148] 84MYX.XA GTGTGT-GA-TG-AAGGTC--TT-T-GGATTGTAAAGCA---CT-TTCG--ACCGG-------------GAAGAA-AA---CCCGTTGGCT---AACATC [150] 85P.TEST GTGCAG-GA-TG-AAGGCC--CT-C-GGGTTGTAAACTG---CT-TTTG--TACGG-------------AACGAA--A---AGCCTGGGGC---TA-ATA [149] 86AG.TUM GTGAGT-GA-TG-AAGGCC--TT-A-GGGTTGTAAAGCT---CT-TTCA--CCGGA-------------GAAGAT-AA---------------------- [136] 87DV.DES GTGAGG-GA-TG-AAGGTT--TT-C-GGATCGTAAACCT---CT-GTCA--GAAGG-------------GAAGAA-AC---TACGTTGTGC---TA-ATC [150] 88BA.FRG GTGAAG-GA-TG-AAGGCT--CTATGGGTCGTAAACTT---CT-TTTA-?-TATAA-------------GAATAA------AGTGCAGTAT---GT-ATA [151] 89'Zea_mays_(chloroplast)' GTGGAG-GT-GG-AAGGCC--TA-C-GGGTCGTCAACTT---CT-TTTC--TCGGA-------------GAAGAA------------------------- [132] 90T.AMIT GTGAGT-GA-AG-AAGGGCAATG-C-CGCTTGTAAAGCT---CT-TTCG--TCGAG-------------TGCG--------------------------- [140] 91 92[ 210 220 230 240 250 260 270 280 290 300] 93[ . . . . . . . . . .] 94 95Homo_sapiens ATTGGAG-----------------------------GGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCA [219] 96Rattus_norvegicus ATTGGAG-----------------------------GGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCA [219] 97Xenopus_laevis ATTGGAG-----------------------------GGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCA [219] 98A._salina ATTGGAG-----------------------------GGCAAGTCTGGTGCCAGCAGCCGCGGTAACTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCG [219] 99S._cerevisiae ATTGGAG-----------------------------GGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCA [219] 100P.MICA ATTGGAG-----------------------------GGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCG [216] 101D.DISC ATTG?AG-----------------------------GGCAAGTCTGGTGCCAGCRGCCGCGGTAATTCCAGCTCCAATAGCATATACTAAAGTTGTTGCA [216] 102T.BRUC ATTGGAG-----------------------------GACAAGTCTGGTGCCAGCACCCGCGGTAATTCCAGCTCCAAAAGCGTATATTAATGCTGTTGCT [228] 103E.GRAC ACCGGAG-----------------------------GGCAAGTCTGGTGCCAGCAGCTGCGGTAATTCCAGCTCCGAGGGCGTATACTAACATTGCTGCT [226] 104Zea_mays ATTGGAG-----------------------------GGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCA [219] 105D._mobilis AGCGGGG-----------------------------GGCAAGTCTGGTGTCAGCCGCCGCGGTAATACCAGCCCCGCGAGTGGTCGGGACGATTATTGGG [200] 106S._solfataricus AGCGGGG-----------------------------GGCAAGTCTGGTGTCAGCCGCCGCGGTAATACCAGCTCCGCGAGTGGTCGGGGTGATTACTGGG [198] 107T._tenax AGCGGGG-----------------------------GGTAAGTCTGGTGTCAGCCGCCGCGGTAATACCAGCCCCGCGAGTGGTCAGGGTGATTACTGGG [201] 108M._vannielii AGGGCTG-----------------------------GGCAAGTTCGGTGCCAGCAGCCGCGGTAATACCGACGGCCCGAGTGGTAGCCACTCTTATTGGG [201] 109MB._formicicum AGAGCTG-----------------------------GGCAAGACCGGTGCCAGCCGCCGCGGTAACACCGGCAGCTCAAGTGGTGGCCGTTTTTATTGGG [202] 110MS._hungatei AGGGC?G-----------------------------GGCAAG?????--------------GTAATACCG-------GAGTGGTGGCCGCTATTACTGGG [176] 111H._volacanii AGAGCTG-----------------------------GGCAAGACCGGTGCCAGCCGCCGCGGTAATACCGGCAGCTCAAGTGATGACCGATATTATTGGG [203] 112HC._morrhuae AGAGCTG-----------------------------GGCAAGACCGGTGCCAGCCGCCGCGGTAATACCGGCAGCTCGAGTGATAGCCACTATTATTGGG [203] 113H.HALO AGGACTG-----------------------------GGCAAGACCGGTGCCAGCCGCCGCGGTAATACCGGCAGTCCGAGTGATGGCCGATCTTATTGGG [203] 114H._cutirubrum AGGACTG-----------------------------GGCAAGACCGGTGCCAGCCGCCGCGGTAATACCGGCAGTCCGAGTGATGGCCGATCTTATTGGG [203] 115AN._nidulans -----------TGACGGTACCTGAGGAATAAGCCTCGGCTAATTCCGTGCCAGCAGCCGCGGTAATACGGGAGAGGCAAGCGTTATCCGGAATTATTGGG [227] 116HE.CHL ----------TTGACGGTACCCGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCAAGCGTTGTCCGGAATGACTGGG [211] 117Bc._subtilis GGGCGGTACCTTGACGGTACCTAACCAGAAAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGAATTATTGGG [250] 118MY.CAP TGACTTTATCTTGACAGTACCTTACCAGAAAGCCACGGCTAACTATGTGCCAGCAGCCGCGGTAATACATAGGTGGCAAGCGTTATCCGGATTTATTGGG [247] 119E._coli CCTTTGCTCATTGACGTTACCCGCAGAAGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTAATCGGAATTACTGGG [248] 120MYX.XA CAACGG---CTTGACGGTACCGGGAGAAGAAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGTGCAAGCGTTGTTCGGAATTATTGGG [247] 121P.TEST TCCCCGGGTCATGACGGTACCGTAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTACTGGG [249] 122AG.TUM -----------TGACGGTATCCGGAGAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTGTTCGGAATTACTGGG [225] 123DV.DES AG-CAGCGTACTGACGGTACCTTCAAAGGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTAATCGGAATTACTGGG [249] 124BA.FRG C-----TGTTTTGTATGTATTATATGAATAAGGATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATCCGAGCGTTATCCGGATTTATTGGG [246] 125'Zea_mays_(chloroplast)' -------ACAATGACGGTATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCGGAATGATTGGG [225] 126T.AMIT ----CGATCAT-GACAGGACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTCTTCGGAATGACTGGG [235] 127 128[ 310 320 330 340 350 360 370 380 390 400] 129[ . . . . . . . . . .] 130 131Homo_sapiens GTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGGGCGGGCGGTCCGCC----------------------------------------------------- [266] 132Rattus_norvegicus GTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGGGCGGGCGGTCCGCC----------------------------------------------------- [266] 133Xenopus_laevis GTTAAAAAGCTCGTAGTTGGATCTTGGGATCGAGCTGGCGGTCCGCCGCGAGGC---------------------------------------------- [273] 134A._salina GTTAAAAAGCTCGTAGTTGGATATGGGTCTCGGTCGGGTGGTGCCGCCTCAC------------------------------------------------ [271] 135S._cerevisiae GTTAAAAAGCTCGTAGTTGAACTTTGGGCCCGGTTGGCCGGTCCGATTTTTT------------------------------------------------ [271] 136P.MICA GTTAAAAAGCTCGTAGTTGGATTTCTGCCGAGGACGACCGGTCCGCCTCT-------------------------------------------------- [266] 137D.DISC GTTAAAAAGCTCGTAGTTGAAGTTTAAGGTTTACCGGGTTTATGTCATTTACCACTT------------------------------------------- [273] 138T.BRUC GTTAAAGGGTTCGTAGTTGAACTGTGGGCCACGTAGTTTTGTGCCGTGCCAGTC----------CCGTCCA--------CCTCGGAC-------GTGTT- [302] 139E.GRAC GTTAAAACACTTGTAGTCTGCCTACGGGCTGCA-GGTCTGCTGGGTGGCCGGTTTGTTGTTTCTCTGGCCAGGGAAGGACCTCGGTTCGACCCTGTGTTG [325] 140Zea_mays GTTAAAAAGCTCGTAGTTGGACCTTGGGCCGGGCCGGGTGCCGCCGCC---------------------------------------------------- [267] 141D._mobilis CCTAAAGCGCCCGTAGCCG--------GCCCGGCAAGTCCCCTC-------------------------------------------------------- [236] 142S._solfataricus CCTAAAGCGCCTGTAGCCG--------GCCCACCAAGTCGCCCC-------------------------------------------------------- [234] 143T._tenax CTTAAAGCGCCCGTAGCCG--------GCCCGGCAAGTCGCTCC-------------------------------------------------------- [237] 144M._vannielii CCTAAAGCGTCCGTAGCCG--------GTCCAGTAAGTCCCTGT-------------------------------------------------------- [237] 145MB._formicicum CCTAAAGCGTTCGTAGCCG--------GCTTGATAAGTCTCTGG-------------------------------------------------------- [238] 146MS._hungatei CTTAAAGGGTCCGTAGCTG--------GATATACAAGTCCCTTG-------------------------------------------------------- [212] 147H._volacanii CCTAAAGCGTCCGTAGCCG--------GCCACGAAGGTTCATCG-------------------------------------------------------- [239] 148HC._morrhuae CCTAAAGCGTCCGTAGCCG--------GCCGAACAGGTCCGTCG-------------------------------------------------------- [239] 149H.HALO CCTAAAGCGTCCGTAGCTG--------GCTGAACAAGTCCGTTG-------------------------------------------------------- [239] 150H._cutirubrum CCTAAAGCGTCCGTAGCTG--------GCTGAACAAGTCCGTTG-------------------------------------------------------- [239] 151AN._nidulans CGTAAAGCGCCTGCAGGCG--------GTTAATCAAGTCTGTTG-------------------------------------------------------- [263] 152HE.CHL CGTAAAGCGCGTGCAGGCG--------GACATGTAAGTCTGAGG-------------------------------------------------------- [247] 153Bc._subtilis CGTAAAGCGCTCGCAGGCG--------GTTTCTTAAGTCTGATG-------------------------------------------------------- [286] 154MY.CAP CGTATAGGGTGCGTAGGCG--------GTTTTGCAAGTTTGAGG-------------------------------------------------------- [283] 155E._coli CGTAAAGCGCACGCAGGCG--------GTTTGTTAAGTCAGATG-------------------------------------------------------- [284] 156MYX.XA CGTAAAGCGCGTGTAGGCG--------GCGTGACAAGTCGGGTG-------------------------------------------------------- [283] 157P.TEST CGTAAAGCGTGCGCAGGCG--------GTTTTGTAAGACAGTGG-------------------------------------------------------- [285] 158AG.TUM CGTAAAGCGCACGTAGGCG--------GATATTTAAGTCAGGGG-------------------------------------------------------- [261] 159DV.DES CGTAAAGCGCACGTAGGCT--------GTAGTGTAAGTCAGGGG-------------------------------------------------------- [285] 160BA.FRG TTTAAAGGGAGCGTAGGTG--------GACTGGTAAGTCAGTTG-------------------------------------------------------- [282] 161'Zea_mays_(chloroplast)' CGTAAAGCGTCTGTAGGTG--------GCTTTTCAAGTCCGCCG-------------------------------------------------------- [261] 162T.AMIT CGTAAAGGGCACGTAGGCG--------GTGAATCGGGTTGAAAG-------------------------------------------------------- [271] 163 164[ 410 420 430 440 450 460 470 480 490 500] 165[ . . . . . . . . . .] 166 167Homo_sapiens ---------GCGAGGCGAGCCACCGCCC-GTCCCC---GCCCCTTGCCTCTCGG-CG-CCCC-------------------------------------- [313] 168Rattus_norvegicus ---------GCGAGGCGGCTCAGCGCCCTGTCCCC---AGCCCCTGCCTCTCGG-CG-CCCC-------------------------------------- [314] 169Xenopus_laevis --------GGCTAC-CGCCTGTCCCAGCCCCTGCCTCTCGGCGCCTCCCCGATG-CT-CTTG-------------------------------------- [324] 170A._salina --------GGTGGTCACTGCCTCGATCGGACAATTCATTGGATCGTTCGGGGTG-CT-CTTA-------------------------------------- [323] 171S._cerevisiae --------CGTGTACTGGATTTCCAACGGGGCCTT---TCCTTCTGGCTAACCT-TG-AGTC-------------------------------------- [320] 172P.MICA ---------GGGTGAGTATCTGCTCGCCTGGCATC---TTCTT--GGAGAACGT-AG-CTGG-------------------------------------- [312] 173D.DISC --------CGTGGT-TAAATCGACACCGGTATCTCT-TTCTTAATAGTTCAGCT-TG-TATT-------------------------------------- [323] 174T.BRUC ------------TTGACCCACGCCCTCGTGGCCCG---TGAACACACTCAGATA-CA-AG--AAACACGGGAGCGGTTCCT------------CCTCACT [371] 175E.GRAC GGCTGCAACGGCTGGACTCAACCCCCAGTGGTACG---TCCCTGCGCCCACCTC-TC-AGTCGATGGTGAGATCTGCTCCTGCCAAAAGTCTGCTTCACT [420] 176Zea_mays ---------GTACG-GGCAGAACCGACCGGCTCGA---CCCTTCTGCCGGCGAT-GC-GCTC-------------------------------------- [314] 177D._mobilis ---------------CTAAATTCCCG-------------------GGCTCAACC-CG-GG---------------------------------------- [260] 178S._solfataricus ---------------TTAAAGTCCCC-------------------GGCTCAACC-GG-GG---------------------------------------- [258] 179T._tenax ---------------TGAAATCCCCA-------------------GGCTCAACC-TG-GG---------------------------------------- [261] 180M._vannielii ---------------TTAAATTCTCT-------------------GGCTTAACCA-G-AG---------------------------------------- [261] 181MB._formicicum ---------------TGAAATCTCAC-------------------GGCTTAACCGTG-AG---------------------------------------- [263] 182MS._hungatei ---------------AGAAATCCGCC-------------------GGCTTAACCG-G-TG---------------------------------------- [236] 183H._volacanii ---------------GGAAATCCGCC-------------------AGCTCAACT-GG-CG---------------------------------------- [263] 184HC._morrhuae ---------------GGAAATCCACC-------------------CGCTCAACG-GGTGG---------------------------------------- [264] 185H.HALO ---------------GGAAATCTGTC-------------------CGCTTAACG-GG-CA---------------------------------------- [263] 186H._cutirubrum ---------------GGAAATCTGTC-------------------CGCTTAACG-GG-CA---------------------------------------- [263] 187AN._nidulans ---------------TCAAAGCGTGG-------------------GGCTCAACC-TC-AT---------------------------------------- [287] 188HE.CHL ---------------TGAAAGCTTGG-------------------AGCTCAACT-CC-GA---------------------------------------- [271] 189Bc._subtilis ---------------TGAAAGCCCCC-------------------GGCTCAACC-GG-GG---------------------------------------- [310] 190MY.CAP ---------------TTAAAGTCCGG-------------------AGCTCAACT-CC-GG---------------------------------------- [307] 191E._coli ---------------TGAAATCCCCG-------------------GGCTCAACC-TG-GG---------------------------------------- [308] 192MYX.XA ---------------TGAAAGCCCTC-------------------AGCTCAACT-GA-GG---------------------------------------- [307] 193P.TEST ---------------TGAAATCCCCG-------------------GGCTCAACC-TG-GG---------------------------------------- [309] 194AG.TUM ---------------TGAAATCCCAG-------------------AGCTCAACT-CT-GG---------------------------------------- [285] 195DV.DES ---------------TGAAATCCCAC-------------------GGCTCAACC-GT-GG---------------------------------------- [309] 196BA.FRG ---------------TGAAAGTTTGC-------------------GGCTCAACC-GT-AA---------------------------------------- [306] 197'Zea_mays_(chloroplast)' ---------------TCAAATCCCAG-------------------GGCTCAACC-CT-GG---------------------------------------- [285] 198T.AMIT ---------------TGAAAGTCGCC-------------------AAA--AAGT-GG-CG---------------------------------------- [293] 199 200[ 510 520 530 540 550 560 570 580 590 600] 201[ . . . . . . . . . .] 202 203Homo_sapiens --------------CTCGATGCTCT-TAG-----------------------------------CT-GAGTGTCCCGCGGGGCCCGAAGCGTTTACTT-- [360] 204Rattus_norvegicus --------------CTCGATGCTCT-TAG-----------------------------------CT-GAGTGTCCCGCGGGGCCCGAAGCGTTTACTT-- [361] 205Xenopus_laevis --------------ACTGAGTGTCC-CGG-----------------------------------GG-GC--------------CCGAAGCGTTTACTT-- [357] 206A._salina --------------ACCGAGTGTCC-TGG-----------------------------------GT-GG--------------CCGATACGTTTACTT-- [356] 207S._cerevisiae --------------CTTGTGGCTCT-TGG-----------------------------------CG-AA--------------CCAGGACTTTTACTT-- [353] 208P.MICA --------------CACTTGACTGTGTGG-------------------------------TGCGGT-AT--------------CCAGGACTTTTACTT-- [350] 209D.DISC --------------ATCTTTGATAG-TGC-----------------------------------TT-GT--------------TTGGACATTTCACTG-- [356] 210T.BRUC --------------TTCACGCATGT-CATGCATGCGAGGGG------------------------G-CG--------------TCCGTGAATTTTACTGT [417] 211E.GRAC GCAGGCCAAAGCGGTTTATGCCTCC-CGCACTGGCAACGGACACCAACAGGGGACCCAGC--CTCG-AG--------------CTGGGTAGTCTACCTCT [502] 212Zea_mays --------------CTGGCCTTAAC-TGG-----------------------------------CC-GGGT------CGTGCCTCCGGGCCGTTACTT-- [355] 213D._mobilis -------------------GACTGG-AGG-----------------------------------GG-A-------------------------------- [272] 214S._solfataricus -------------------AACTGG-GGG-----------------------------------CG-A-------------------------------- [270] 215T._tenax -------------------GGCAGG-GGG-----------------------------------CG-A-------------------------------- [273] 216M._vannielii -------------------GACTGG-CAG-----------------------------------GG-A-------------------------------- [273] 217MB._formicicum -------------------AATTGC-TGG-----------------------------------AG-A-------------------------------- [275] 218MS._hungatei -------------------GCGTTC-AGG-----------------------------------GG-A-------------------------------- [248] 219H._volacanii -------------------GGCGTC-CGG-----------------------------------TGAA-------------------------------- [276] 220HC._morrhuae -------------------GACGTC-CGG-----------------------------------CGGA-------------------------------- [277] 221H.HALO -------------------GGCGTC-CAG-----------------------------------CGGA-------------------------------- [276] 222H._cutirubrum -------------------GGCGTC-CAG-----------------------------------CGGA-------------------------------- [276] 223AN._nidulans -------------------ACAGGC-AAT-----------------------------------GG-A-------------------------------- [299] 224HE.CHL -------------------AACGGC-CTT-----------------------------------GG-A-------------------------------- [283] 225Bc._subtilis -------------------AGGGTC-ATT-----------------------------------GG-A-------------------------------- [322] 226MY.CAP -------------------TTCGCC--TT-----------------------------------GA-A-------------------------------- [318] 227E._coli -------------------AACTGC-ATC-----------------------------------TG-A-------------------------------- [320] 228MYX.XA -------------------AAGTGC-GCC-----------------------------------CG-A-------------------------------- [319] 229P.TEST -------------------AACTGC-CAT-----------------------------------TG-T-------------------------------- [321] 230AG.TUM -------------------AACTGC-CTT-----------------------------------TG-A-------------------------------- [297] 231DV.DES -------------------AACTGC-CTT-----------------------------------TG-A-------------------------------- [321] 232BA.FRG -------------------AATTGC-AGC-----------------------------------TG-A-------------------------------- [318] 233'Zea_mays_(chloroplast)' -------------------ACAGGC-GGT-----------------------------------GG-A-------------------------------- [297] 234T.AMIT -------------------GAATGC-TCT-----------------------------------CG-A-------------------------------- [305] 235 236[ 610 620 630 640 650 660 670 680 690 700] 237[ . . . . . . . . . .] 238 239Homo_sapiens ----------------------------------TGAAAAAATTAGAGTGTTCAAAGCA----------GGCCCGAGCCGCCT-------GGATACCG-C [408] 240Rattus_norvegicus ----------------------------------TGAAAAAATTAGAGTGTTCAAAGCA----------GGCCCGAGCCGCCT-------GGATACCG-C [409] 241Xenopus_laevis ----------------------------------TGAAAAAATTAGAGTGTTCCAAGCA----------GGC-CGCGTCGCCT-------GGATACTT-C [404] 242A._salina ----------------------------------TGAACAAATTAGAGTGCTTAAAGCA----------GGTGCACCGCGCCT-------GAATATCA-C [404] 243S._cerevisiae ----------------------------------TGAAAAAATTAGAGTGTTCAAAGCA----------GGC--GTATTGCTC-------GAATATAT-T [399] 244P.MICA ----------------------------------TGAGGAAATTAGAGTGTTTCAAGCC----------AGT---TACGCCTT-------GAATACAT-T [395] 245D.DISC ----------------------------------TGAGAAAATTGTGGTGTTTAAAGCA----------GGC--GTCTCGCCT-------GATCTTTTGC [403] 246T.BRUC GACC--------------------------------AAAAA----AGTGCGACCAAAGCAGTCTGCCGAC-T--TGAATTACAAAGCATGGGATAACG-A [477] 247E.GRAC GGTCCACCACCGGAGCCCACCGTCTTCGACACCCTGGAAAACTCAGTGTGCTCAAAGCATCCCCGCGACGGC--TGAATGTCCATCCATGGAATGTCA-A [599] 248Zea_mays ----------------------------------TGAAGAAATTAGAGTGCTCAAAGCA----------AGC---CATCGCTCT------GGATACAT-T [401] 249D._mobilis ---------------------------------------------------------------------------TACTGCCG-------GGCTA----- [285] 250S._solfataricus ---------------------------------------------------------------------------TACTGGTG-------GGCTA----- [283] 251T._tenax ---------------------------------------------------------------------------TACTGCCG-------GGCTA----- [286] 252M._vannielii ---------------------------------------------------------------------------TACTGCTG-------GACTT----- [286] 253MB._formicicum ---------------------------------------------------------------------------TACTATTA-------GCCTT----- [288] 254MS._hungatei ---------------------------------------------------------------------------AACTGTAT-------TTCTA----- [261] 255H._volacanii ---------------------------------------------------------------------------AACCACGT-------GGCTT----- [289] 256HC._morrhuae ---------------------------------------------------------------------------AACCAGTC-------GGCTT----- [290] 257H.HALO ---------------------------------------------------------------------------AACTGTTC-------AGCTT----- [289] 258H._cutirubrum ---------------------------------------------------------------------------AACTGTTC-------AGCTT----- [289] 259AN._nidulans ---------------------------------------------------------------------------AACTGATT-------GACTA----- [312] 260HE.CHL ---------------------------------------------------------------------------AACTGGAT-------GTCTT----- [296] 261Bc._subtilis ---------------------------------------------------------------------------AACTGGGG-------AACTT----- [335] 262MY.CAP ---------------------------------------------------------------------------GACTGTTT-------TACTA----- [331] 263E._coli ---------------------------------------------------------------------------TACTGGCA-------AGCTT----- [333] 264MYX.XA ---------------------------------------------------------------------------AACTGTTG-------TGCTT----- [332] 265P.TEST ---------------------------------------------------------------------------GACTGCAA-------GGCTA----- [334] 266AG.TUM ---------------------------------------------------------------------------TACTGGGT-------ATCTT----- [310] 267DV.DES ---------------------------------------------------------------------------TACTGCAC-------AACTT----- [334] 268BA.FRG ---------------------------------------------------------------------------TACTGTCA-------GTCTT----- [331] 269'Zea_mays_(chloroplast)' ---------------------------------------------------------------------------AACTACCA-------AGCTG----- [310] 270T.AMIT ---------------------------------------------------------------------------AACCAATT-------CACTT----- [318] 271 272[ 710 720 730 740 750 760 770 780 790 800] 273[ . . . . . . . . . .] 274 275Homo_sapiens AGCTAGGAATAA---TGGAATAGGA-------------C-CGCGGTTCTATTTTG-------------TTGGTTTTC------GGAACT-G--------- [462] 276Rattus_norvegicus AGCTAGGAATAA---TGGAATAGGA-------------C-CGCGGTTCTATTTTG-------------TTGGTTTTC------GGAACT-G--------- [463] 277Xenopus_laevis AGCTAGGAATAA---TGGAATAGGA-------------C-TCCGGTTCTATTTTG-------------TTGGTTTTC------GGAACT-G--------- [458] 278A._salina AGCATGGAATGA---TGGAATAGGA-------------C-CTCGGTCTTATTATG-------------TTGGTTTTC------TGGACTTG--------- [459] 279S._cerevisiae AGCATGGAATAA---TAGAATAGGA-------------CGTTTGGTTCTATTTTG-------------TTGGTTTCT------AGGACC-A--------- [454] 280P.MICA AGCATGGAATAA---TAAGATAGGA-------------C-CTCGGTTCTATTTTG-------------TTGGTTTCT------AGAGCT-G--------- [449] 281D.DISC AGCATGGTATGA---TGAAACATGA-------------CATTTTACGCTATTGGT-------------TTGCGTTTA------AAG-------------- [454] 282T.BRUC AGCATCAGCCCTGGG-GCCACCGTTTCGGCTTTTGTTGGTTTTAGAAGTCCTTGGGAGATTATGGGGCCGCGTGCCTTGGGTCGGTGTT-TCGTGTCTCA [575] 283E.GRAC GGCATCGACCAAGTGTGGCA----TTGGAGTTGTGCTGCCTTGGGGCCCACTCTGGACAACCTGGTGGTGTGTTCCTG----CAGGATC-AACAGGATCG [690] 284Zea_mays AGCATGGGATAA---CATCATAGGA-------------T-TCCGGTCCTATTGTG-------------TTGGCCTTC------GGGATC-G--------- [455] 285D._mobilis ---------------------------------------------------------------------------------------------------- [285] 286S._solfataricus ---------------------------------------------------------------------------------------------------- [283] 287T._tenax ---------------------------------------------------------------------------------------------------- [286] 288M._vannielii ---------------------------------------------------------------------------------------------------- [286] 289MB._formicicum ---------------------------------------------------------------------------------------------------- [288] 290MS._hungatei ---------------------------------------------------------------------------------------------------- [261] 291H._volacanii ---------------------------------------------------------------------------------------------------- [289] 292HC._morrhuae ---------------------------------------------------------------------------------------------------- [290] 293H.HALO ---------------------------------------------------------------------------------------------------- [289] 294H._cutirubrum ---------------------------------------------------------------------------------------------------- [289] 295AN._nidulans ---------------------------------------------------------------------------------------------------- [312] 296HE.CHL ---------------------------------------------------------------------------------------------------- [296] 297Bc._subtilis ---------------------------------------------------------------------------------------------------- [335] 298MY.CAP ---------------------------------------------------------------------------------------------------- [331] 299E._coli ---------------------------------------------------------------------------------------------------- [333] 300MYX.XA ---------------------------------------------------------------------------------------------------- [332] 301P.TEST ---------------------------------------------------------------------------------------------------- [334] 302AG.TUM ---------------------------------------------------------------------------------------------------- [310] 303DV.DES ---------------------------------------------------------------------------------------------------- [334] 304BA.FRG ---------------------------------------------------------------------------------------------------- [331] 305'Zea_mays_(chloroplast)' ---------------------------------------------------------------------------------------------------- [310] 306T.AMIT ---------------------------------------------------------------------------------------------------- [318] 307 308[ 810 820 830 840 850 860 870 880 890 900] 309[ . . . . . . . . . .] 310 311Homo_sapiens -------------------------AGGCCATGATT----------------------------------------AAGAGGGACGGCCGGGGGCATTCG [497] 312Rattus_norvegicus -------------------------AGGCCATGATT----------------------------------------AAGAGGGACGGCCGGGGGCATTCG [498] 313Xenopus_laevis -------------------------GGGCCATGATT----------------------------------------AAGAGGGACGGCCGGGGGCATTCG [493] 314A._salina -------------------------AGGTAATGGTT----------------------------------------AACAGAGACAGACGGGGGCATTCG [494] 315S._cerevisiae -------------------------TCGTAATGATT----------------------------------------AATAGGGACGGTCGGGGGCATCGG [489] 316P.MICA -------------------------AGGTAATGATT----------------------------------------AATAGGGATAGTTGGGGGCATTCG [484] 317D.DISC --------------------------TGTAATGATT----------------------------------------AATAGGGATGGATGGGGGTGTTCA [488] 318T.BRUC TTTTTGTGGCGCGCACATTCGGCTCTTCGTGATGTTTTTTTACATTCATTGCGACGCGCGGCTTCCAGGAAT--GAAGGAGGGTAGTTCGGGGGAGAACG [673] 319E.GRAC TTGCCCTGCCTGGCC--TTCGGGTCTCGTCAGGCTTCGTCCCCTGTCCCTGCAGCTTGCACCCATCGATCGTAAGTGATGGGACTGTTCGGGGTGAAAGA [788] 320Zea_mays -------------------------GAGTAATGATT----------------------------------------AATAGGGACAGTCGGGGGCATTCG [490] 321D._mobilis -------------------------------------------------------------------------------GGGGGTGGGAGAGGCCGAGGG [306] 322S._solfataricus -------------------------------------------------------------------------------GGGGGCGGGAGAGGCGGGGGG [304] 323T._tenax -------------------------------------------------------------------------------GGGGGCGGGAGAGGCCGCCGG [307] 324M._vannielii -------------------------------------------------------------------------------GGGACCGGGAGAGGACAAGGG [307] 325MB._formicicum -------------------------------------------------------------------------------GAGGCCGGGAGAGGTTAGCGG [309] 326MS._hungatei -------------------------------------------------------------------------------GGGACCGGGAGAGGTGAGAGG [282] 327H._volacanii -------------------------------------------------------------------------------GGGACCGGAAGGCTCGAGGGG [310] 328HC._morrhuae -------------------------------------------------------------------------------GGGGCCGGGAGACCAGAGAGG [311] 329H.HALO -------------------------------------------------------------------------------GGGACCGGAAGACCTGAGGGG [310] 330H._cutirubrum -------------------------------------------------------------------------------GGGACCGGAAGACCTGAGGGG [310] 331AN._nidulans -------------------------------------------------------------------------------GAGTATGGTAGGGGTAGCGGG [333] 332HE.CHL -------------------------------------------------------------------------------GAGAGATGGAGAGGATAGCGG [317] 333Bc._subtilis -------------------------------------------------------------------------------GAGTGCAGAAGAGGAGAGTGG [356] 334MY.CAP -------------------------------------------------------------------------------GAATGCAAGAGAGGTAAGCGG [352] 335E._coli -------------------------------------------------------------------------------GAGTCTCGTAGAGGGGGGTAG [354] 336MYX.XA -------------------------------------------------------------------------------GAGTGCCGGA?AGGGTGGCGG [353] 337P.TEST -------------------------------------------------------------------------------GAGTGCGGCAGAGGGGGATGG [355] 338AG.TUM -------------------------------------------------------------------------------GAGTATGGAAGAGGTAAGTGG [331] 339DV.DES -------------------------------------------------------------------------------GAATCCGGGAGAGGGTGGCGG [355] 340BA.FRG -------------------------------------------------------------------------------GAGTACAGTAGAGGTGGGCGG [352] 341'Zea_mays_(chloroplast)' -------------------------------------------------------------------------------GAGTACGGTAGGGGCAGAGGG [331] 342T.AMIT -------------------------------------------------------------------------------GAGTGAGACAGAGGAGAGTGG [339] 343 344[ 910 920 930 940 950 960 970 980 990 1000] 345[ . . . . . . . . . .] 346 347Homo_sapiens TATTGCGCCGCTA--GAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCG [595] 348Rattus_norvegicus TATTGCGCCGCTA--GAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCG [596] 349Xenopus_laevis TATTGTGCCGCTA--GAGGTGAAATTCTTGGACCGGCGCAAGACGAACCAAAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCG [591] 350A._salina TACTGCGACGCTA--GAGGTGAAATTCTTGGACCGTCGCAAGACGAACAACTGCGAACAAGTTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTTA [592] 351S._cerevisiae TATT-CAATTGTC--GAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTTGCCAAGGACGTTTTCGTTAATCAAGAACGAAAGTTG [586] 352P.MICA TATT-TAACTGGTCAGAGGTGAAATTCTCGGATTTGTTAAAGACGGACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTGATCAAGAACGAAAGTTA [583] 353D.DISC TATTGGTGGGCGA--GAGGTGAAATTCGTTGACCCTATCAAGATGAACTTCTGCGAAAGCATTCACCAAATACTTCCCCATTAATCAAGAACGAAAGTTT [586] 354T.BRUC TACT-GGTGCGTCA-GAGGTGAAATTCTTAGACCGCACCAAGACGAACTACAGCGAAGGCATTCTTCAAGGATACCTTCCTCAATCAAGAACCAAAGTGT [771] 355E.GRAC TACG-GGAGCGCCA-GAGGTGAAATTCTTAGATCGCTGCCAGATCCACTGCAGCGAAGGCGTTCTGCAAGTGCACGTCCGTCGATCAAGAATGAGAGTTC [886] 356Zea_mays TATTTCATAGTCA--GAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTG [588] 357D._mobilis TACTCCCGGGGTA--GGGGCGAAATCCTATAATCCCGGGAGGACCACCAGTGGCGAAGGCGCTCGGCTGGAACACGCCCGACGGTGAGGGGCGAAAGCCG [404] 358S._solfataricus TACTCCCGGAGTA--GGGGCGAAATCCTTAGATACCGGGAGGACCACCAGTGGCGGAAGCGCCCCGCTAGAACGCGCCCGACGGTGAGAGGCGAAAGCCG [402] 359T._tenax TACTCCGGGGGTA--GGGGCGAAATCCTATAATCCCCGGAGGACCACCAGTGGCGAAAGCGGGCGGCCAGAACGCGCCCGACGGTGAGGGGCGAAAGCCG [405] 360M._vannielii TACTCCAGGGGTA--GCGGTGAAATGTGTTGATCCTTGGAGGACCACCTATGGCGAAGGCACTTGTCTGGAACGGGTCCGACGGTGAGGGACGAAAGCCA [405] 361MB._formicicum TACTCCCGGGGTA--GGGGTGAAATCCTATAATCCCGGGAGGACCACCTGTGGCGAAGGCGGCTAACTGGAACGGGCCTGACGGTGAGTAACGAAAGCCA [407] 362MS._hungatei TACTGCCGGGGTA--GGAGTGAAATCCTGTAATCCCGGTGGGACCACCTATGGCGAAGGCATCTCACCAGAACGGGTCCGACAGTGAGGGACGAAAGCTG [380] 363H._volacanii TACGTCCGGGGTA--GGAGTGAAATCCCGTAATCCTGGACGGACCACCGATGGCGAAAGCACCTCGAGAAGACGGATCCGACGGTGAGGGACGAAAGCTA [408] 364HC._morrhuae TACGTCCGGGGTA--GGAGTGAAATCCTGTAATCCTGGACGGACCACCGGTAGCGAAAGCGTCTCTGGAGAACGGACCCGACGGTGAGGGACGAAAGCTT [409] 365H.HALO TACGTCTGGGGTA--GGAGTGAAATCCTGTAATCCTGGACGGACCGCCGGTGGCGAAAGCGCCTCAGGAGAACGGATCCGACAGTGAGGGACGAAAGCTA [408] 366H._cutirubrum TACGTCTGGGGTA--GGAGTGAAATCCTGTAATCCTGGACGGACCGCCGGTGGCGAAAGCGCCTCAGGAGAACGGATCCGACAGTGAGGGACGAAAGCTA [408] 367AN._nidulans AATTCCAGGTGTA--GCGGTGAAATGCGTAGATATCTGGAAGAACACCAGCGGCGAAAGCGCGCTACTGGGCCATAACTGACGCTCATGGACGAAAGCTA [431] 368HE.CHL AATTCCCGGTGTA--GCGGTGAAATGCGTAGATATCGGGAGGAACACCCGTGGCGAAGGCGGCTATCTGGACATTATCTGACGCTGAGGCGCGAAAGCGT [415] 369Bc._subtilis AATTCCACGTGTA--GCGGTGAAATGCGTAGAGATGTGGAGGAACACCAGTGGCGAAGGCGGCTCTCTGGTCTGTAACTGACGCTGAGGAGCGAAAGCGT [454] 370MY.CAP AATTCCATGTGTA--GCGGTGAAATGCGTAGATATATGGAAGAACACCTGTGGCGAAAGCGGCTTACTGGCTTGTTATTGACGCTGAGGCACGAAAGCGT [450] 371E._coli AATTCCAGGTGTA--GCGGTGAAATGCGTAGAGATCTGGAGGAATACCGGTGGCGAAGGCGGCCCCCTGGACGAAGACTGACGCTCAGGTGCGAAAGCGT [452] 372MYX.XA AATTCCCCAAGTA--GAGGTGAAATTCGTAGATATGGGGAGGAACACCGGTGGCGAAGGCGGCCACCTGGACGGTAACTGACGCTGAGACGCGAAAGCGT [451] 373P.TEST AATTCCGCGTGTA--GCAGTGAAATGCGTAGATATGCGGAGGAACACCGATGGCGAAGGCAATCCCCTGGGCCTGCACTGACGCTCATGCACGAAAGCGT [453] 374AG.TUM AATTCCGAGTGTA--GAGGTGAAATTCGTAGATATTCGGAGGAACGCCAGTGGCGAAGGCGGCTTACTGGTCCATTACTGACGCTGAGGTGCGAAAGCGT [429] 375DV.DES AATTCCAGGTGTA--GGAGTGAAATCCGTAGATATCTGGAGGAACATCAGTGGCGAAGGCGGCCACCTGGACCGGTATTGACGCTGAGGTGCGAAAGCGT [453] 376BA.FRG AATTCGTGGTGTA--GCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGT [450] 377'Zea_mays_(chloroplast)' AATTTCCGGTGGA--GCGGTGAAATGCATTGAGATCGGAAAGAACACCAACGGCGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTA [429] 378T.AMIT AATTTCGTGTGTA--GGGGTGAAATCCGTAGATCTACGAAGGAACGCCAAAAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCAT [437] 379 380[ 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100] 381[ . . . . . . . . . .] 382 383Homo_sapiens GAGGTTCGAAGACGATCAGATACCGTCGTAGTTCCG--ACCATAAACGATGCCGACCGGCG-------------ATGCGGCG------------------ [662] 384Rattus_norvegicus GAGGTTCGAAGACGATCAGATACCGTCGTAGTTCCG--ACCATAAACGATGCCGACTGGCG-------------ATGCGGCG------------------ [663] 385Xenopus_laevis GAGGTTCGAAGACGATCAGATACCGTCGTAGTTCCG--ACCATAAACGATGCCGACTAGCG-------------ATCCGGCG------------------ [658] 386A._salina GAGGTTCGAAGGCGATCAGATACCGCCCTAGTTCTA--ACCATAAACGATGCCAACCAGCG-------------ATCCGCGG------------------ [659] 387S._cerevisiae AGGGATCGAAGACGATCTGATACCGTCGTAGTCTTA--ACCATAAACTATGCCGACTAG---------------ATCGGGTG------------------ [651] 388P.MICA GGGGATCGAAGACGATCAGATACCGTCCTAGTCTTA--ACCATAAACCATGCCGACTAG-------------AGATTGGAGG------------------ [650] 389D.DISC GGGGATCGAAGACGATCAGATACCGTCGTAGTCCAA--ACTATAAACTATGTCGACCAGGG-------------ATCGGTTA------------------ [653] 390T.BRUC GGGGATCAAAGATGATTAGAGACCATTGTAGTCCAC--ACTGCAAACCATGACACCCATGAATTGGGGAACATCATTGGGTGCCCGTGTGGCGGCCTTTT [869] 391E.GRAC GGGGAGCAAAGATGATCAGACACCGTCGTAGTCCGGCCACTGTAAACGATGCCGGCCAGGCCTTGGCAGA-GCAA--GAATC------------------ [965] 392Zea_mays GGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCA--ACCATAAACGATGCCGACCAGGG-------------AT-CAGCG------------------ [654] 393D._mobilis GGGGAGCGAACCGGATTAGATACCCGGGTAGTCCCG--GCTGTAAACGATGCGGGCTAGGT-------------GTTGGGTG------------------ [471] 394S._solfataricus GGGCAGCAAACGGGATTAGATACCCCGGTAGTCCCG--GCTGTAAACGATGCGGGCTAGGT-------------GTCGAGTA------------------ [469] 395T._tenax GGGGAGCAAAGGGGATTAGATACCCCTGTAGTCCCG--GCCGTAAACGATGCGGGCTAGCT-------------GTCGGCCG------------------ [472] 396M._vannielii GGGGCGCGAACCGGATTAGATACCCGGGTAGTCCTG--GCCGTAAACTCTGCGAACTAGGT-------------GTCACCTG------------------ [472] 397MB._formicicum GGGGCGCGAACCGGATTAGATACCCGGGTAGTCCTG--GCCGTAAACGATGTGGACTTGGT-------------GTTGGGAT------------------ [474] 398MS._hungatei GGGGAGCAAACCGGATTAGATACCCGGGTAGTCCCA--GCTGTAAACGATGCGCGTTAGGT-------------GTGTCAGT------------------ [447] 399H._volacanii GGGTCTCGAACCGGATTAGATACCCGGGTAGTCCTA--GCTGTAAACGATGCTCGCTAGGT-------------GTGACACA------------------ [475] 400HC._morrhuae GGGTCTCGAACCGGATTAGATACCCGGGTAGTCCAA--GCTGTAAACGATGCTCGCTAGGT-------------GTGGCGTT------------------ [476] 401H.HALO GGGTCTCGAACCGGATTAGATACCCGGGTAGTCCTA--GCTGTAAACGATGTCCGCTAGGT-------------GTGGCGCA------------------ [475] 402H._cutirubrum GGGTCTCGAACCGGATTAGATACCCGGGTAGTCCTA--GCTGTAAACGATGTCCGCTAGGT-------------GTGGCGCA------------------ [475] 403AN._nidulans GGGGAGCGAAAGGGATTAGATACCCCTGTAGTCCTA--GCCGTAAACGATGAACACTAGGT-------------GTTGCG-T------------------ [497] 404HE.CHL GGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC--GCCGTAAACGATGAGTGCTAGGT-------------GTTGGG-G------------------ [481] 405Bc._subtilis GGGGAGCGAACAGGATTAGATACCCTGGTAGTCCAC--GCCGTAAACGATGAGTGCTAAGT-------------GTTAGG-G------------------ [520] 406MY.CAP GGGGAGCAAATAGGATTAGATACCCTAGTAGTCCAC--GCCGTAAACGATGAGTACTAAGT-------------GTTGGG-G------------------ [516] 407E._coli GGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC--GCCGTAAACGATGTCGACTTGGA-------------GGTTGT-G------------------ [518] 408MYX.XA GGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC--GCCGTAAACGATGAGAACTAGGT-------------GTCGTG-G------------------ [517] 409P.TEST GGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC--GCCCTAAACGATGTCAACTGGTT-------------GTTGGG-T------------------ [519] 410AG.TUM GGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC--GCCGTAAACGATGAATGTTAGCC-------------GTCGGG-C------------------ [495] 411DV.DES GGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC--GCTGTAAACGATGGATGCTAGAT-------------GTCGGG-G------------------ [519] 412BA.FRG GGGTATCAAACAGGATTAGATACCCTGGTAGTCCAC--ACAGTAAACGATGAATACTCGCT-------------GTTTGC-G------------------ [516] 413'Zea_mays_(chloroplast)' GGGGAGCAAATGGGATTAGAGACCCCAGTAGTCCTA--GCCGTAAACGATGGATACTAGGT-------------GCTGTG-C------------------ [495] 414T.AMIT GGGGAGCGAACAGGATTAGATACCCTGGTAGTCCAT--GCCGTAAACGATG---------A-------------GTGTTC-G------------------ [494] 415 416[ 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200] 417[ . . . . . . . . . .] 418 419Homo_sapiens -----------------------------------------------------------------------------------------------GCGTT [667] 420Rattus_norvegicus -----------------------------------------------------------------------------------------------GCGTT [668] 421Xenopus_laevis -----------------------------------------------------------------------------------------------GCGTT [663] 422A._salina -----------------------------------------------------------------------------------------------ACGTT [664] 423S._cerevisiae -----------------------------------------------------------------------------------------------GTGTT [656] 424P.MICA -----------------------------------------------------------------------------------------------TCGTT [655] 425D.DISC -----------------------------------------------------------------------------------------------AAATT [658] 426T.BRUC GTGCCGACCCTCGGCCCCAATTTATTTATCAATTTACGTGCCTATTCTATCACCCCCGGTTCCCTCTTTTGAGGTTCTTCCGGGGTTTTTTACGGGAATA [969] 427E.GRAC -----------------------------------------------------------------------------------------------CTAGA [970] 428Zea_mays -----------------------------------------------------------------------------------------------GTGTT [659] 429D._mobilis -----------------------------------------------------------------------------------------------GGCTT [476] 430S._solfataricus -----------------------------------------------------------------------------------------------GGCTT [474] 431T._tenax -----------------------------------------------------------------------------------------------GGCTT [477] 432M._vannielii -----------------------------------------------------------------------------------------------GGCCT [477] 433MB._formicicum -----------------------------------------------------------------------------------------------GGCTC [479] 434MS._hungatei -----------------------------------------------------------------------------------------------GACCA [452] 435H._volacanii -----------------------------------------------------------------------------------------------GGCTA [480] 436HC._morrhuae -----------------------------------------------------------------------------------------------GGCTA [481] 437H.HALO -----------------------------------------------------------------------------------------------GGCTA [480] 438H._cutirubrum -----------------------------------------------------------------------------------------------GGCTA [480] 439AN._nidulans -----------------------------------------------------------------------------------------------GAATC [502] 440HE.CHL -----------------------------------------------------------------------------------------------GTATC [486] 441Bc._subtilis -----------------------------------------------------------------------------------------------GGTTT [525] 442MY.CAP -----------------------------------------------------------------------------------------------TAACT [521] 443E._coli -----------------------------------------------------------------------------------------------CCCTT [523] 444MYX.XA -----------------------------------------------------------------------------------------------GAGTT [522] 445P.TEST -----------------------------------------------------------------------------------------------CTTAA [524] 446AG.TUM -----------------------------------------------------------------------------------------------AGTAT [500] 447DV.DES -----------------------------------------------------------------------------------------------AGTAT [524] 448BA.FRG -----------------------------------------------------------------------------------------------ATATA [521] 449'Zea_mays_(chloroplast)' -----------------------------------------------------------------------------------------------GACTC [500] 450T.AMIT -----------------------------------------------------------------------------------------------CCCTT [499] 451 452[ 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300] 453[ . . . . . . . . . .] 454 455Homo_sapiens ATTCCCATG--ACCC-GCCGGGCAGCTT----CCGGGAAA--CCA--AAGTCTTTGGGTTCCGGGGGGAGTATGGTTGCAAAGCTGAAACTTAAAGGAAT [756] 456Rattus_norvegicus ATTCCCATG--ACCC-GCCGGGCAGCTT----CCGGGAAA--CCA--AAGTCTTTGGGTTCCGGGGGGAGTATGGTTGCAAAGCTGAAACTTAAAGGAAT [757] 457Xenopus_laevis ATTCCCATG--ACCC-GCCGAGCAGCTT----CCGGGAAA--CCA--AAGTCTTTGGGTTCCGGGGGGAGTATGGTTGCAAAGCTGAAACTTAAAGGAAT [752] 458A._salina ACTTGAATG--ACTC-CGCGGGCAGCTT----CCGGGAAA--CCA--AAGTGTTTGGGTTCCGGGGGAAGTATGGTTGCAAAGCTGAAACTTAAAGGAAT [753] 459S._cerevisiae TTTTTAATG--ACCC-ACTCGGTACCTT----ACGAGAAA--TCA--AAGTCTTTGGGTTCTGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAAT [745] 460P.MICA ATCTATACG--ACTC-CTTCAGCACCTT----ATGAGAAA--TCA--AAGTCTTTGGGTTCCGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAAT [744] 461D.DISC TTTTCAA-A--ATTT-AATCGGCACCTT----GTGAGAAA--TCAT-GAGTGTTTAGATTCCGGGGGGAGTATGGTCGCAAGTCTGAAACTTAAAGGAAT [747] 462T.BRUC TCCTCAGCA--CGTT-TCTTACTTCTTC----ACGCGAAAGCTTG--GAGGTTACAGTCTCAGGGGGGAGTACGTTCGCAAGAGTGAAACTTAAAGAAAT [1060] 463E.GRAC CTCTGTCAG--GGCC-ACTCCTCCCACA----ACGAGAAA-TCCA--CAGCCTGTGGGTTCAGGGGGGAGTACTGTCGCAAGGCTGAAACTTAAAGGAAT [1060] 464Zea_mays ACTAATAGG--ACCCCGCTGGCCACCTT----ATGAGAAA--TCA--AAGTCTTTGGGTTCCGGGGGGAGTATGGTCGCAGGGCTAAAACTTAAAGGAAT [749] 465D._mobilis ------AGA--GCCC-ACCCAGTGCCGC----A-GGGAAG--CCGTTAAGCCCGCCGCCT----GGGGAGTACGGCCGCAAGGCTGAAACTCAAAGGAAT [556] 466S._solfataricus ------AGA--GCCT-ACTCGGTGCCGC----A-GGGAAG--CCGTTAAGCCCGCCGCCT----GGGGAGTACGGTCGCAAGACTGAAACTTAAAGGAAT [554] 467T._tenax ------AGG--GCCC-GGCCGGTGGCGT----A-GGGAAA--CCGTTAAGCCCGCCGCCT----GGGGAGTACGGCCGCAAGGCTGAAACTTAAAGGAAT [557] 468M._vannielii ------CGA--GCCC-AGGTGGTGCCGA----A-GGGAAG--CCGTTAAGTTCGCCGCCT----GGGGAGTACGGTCGCAAGACTGAAACTTAAAGGAAT [557] 469MB._formicicum ------CGA--GCTG-CCCCAGTGCCGA----A-GGGAAG--CTGTTAAGTCCACCGCCT----GGGAAGTACGGTCGCAAGACTGAAACTTAAAGGAAT [559] 470MS._hungatei ------CGT--GTCA-CTGAGGTGCCGA----A-GGGAAA--CCGTGAAACGCGCCGCCT----GGGGAGTACGGTCGCAAGGCTGAAACTTAAAGGAAT [532] 471H._volacanii ------CGA--GCCT-GTGTTGTGCCGT----A-GGGAAG--CCGAGAAGCGAGCCGCCT----GGGAAGTACGTCCGCAAGGATGAAACTTAAAGGAAT [560] 472HC._morrhuae ------CGA--GCCA-GCGCTGTGCCGT----A-GGGAAG--CCGAGAAGCGAGCCGCCT----GGGAAGTACGTCCGCAAGGATGAAACTTAAAGGAAT [561] 473H.HALO ------CGA--GCCT-GCGCTGTGCCGT----A-GGGAAG--CCGAGAAGCGGACCGCCT----GGGAAGTACGTCTGCAAGGATGAAACTTAAAGGAAT [560] 474H._cutirubrum ------CGA--GCCT-GCGCTGTGCCGT----A-GGGAAG--CCGAGAAGCGGACCGCCT----GGGAAGTACGTCTGCAAGGATGAAACTTAAAGGAAT [560] 475AN._nidulans ------GAC--CCGC---GCAGTGCCGT----A-GCCAAC--GCGTTAAGTGTTCCGCCT----GGGGAGTACGCACGCAAGTTGGAAACTCAAAGGAAT [580] 476HE.CHL ------GAC--CCCC---CCGGTGCCGC----A-GTTCAC--GCAATAAGCACTCCGCCT----GGGGAGTACGGCCGCAAGGTTGAAACTCAAAGGAAT [564] 477Bc._subtilis ------CCG--CCCC---TTAGTGCTGC----A-GCTAAC--GCATTAAGCACTCCGCCT----GGGGAGTACGGTCGCAAGACTGAAACTCAAAGGAAT [603] 478MY.CAP ------C-------------AGCGCTGC----A-GCTAAC--GCATTAAGTACTCCGCCT----GAGTAGTATGCTCGCAAGAGTGAAACTCAAAGGAAT [591] 479E._coli ------GAG--GCG----TGGCTTCCGG----A-GCTAAC--GCGTTAAGTCGACCGCCT----GGGGAGTACGGCCGCAAGGTTAAAACTCAAATGAAT [600] 480MYX.XA ------GAC--CCCC---GCGGTGCCGA----A-GCTAAC--GCATTAAGTTCTCCGCCT----GGGAAGTACGGTCGCAAGACTAAAACTCAAAGGAAT [600] 481P.TEST ------CTG--ACTC-----AGTAACGA----A-GCTAAC--GCGTGAAGTTGACCGCCT----GGGGAGTACGGCCGCAAGGTTGAAACTCAAAGGAAT [600] 482AG.TUM --------A--CTGT---TCGGTGGCGC----A-GCTAAC--GCATTAAACATTCCGCCT----GGGGAGTACGGTCGCAAGATTAAAACTCAAAGGAAT [576] 483DV.DES ------TC------T---TCGGTGTCGT----A-GTTAAC--GCGTTAAGCATCCCGCCT----GGGGAGTACGGTCGCAAGGCTGAAACTCAAAGAAAT [598] 484BA.FRG ------CAG---------TAAGCGGCCA----A-GCGAAA--GCATTAAGTATTCCACCT----GGGGAGTACGCCGGCAACGGTGAAACTCAAAGGAAT [595] 485'Zea_mays_(chloroplast)' ------GAC--CCGT---GCAGTGCTGT----A-GCTAAC--GCGTTAAGTATCCCGCCT----GGGGAGTACGTTCGCAAGAATGAAACTCAAAGGAAT [578] 486T.AMIT ------GGTCTACG----CGGATCAGGGGCCCA-GCTAAC--GCGTGAAACACTCCGCCT----GGGGAGTACGGTCGCAAGACCGAAACTCAAAGGAAT [582] 487 488[ 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400] 489[ . . . . . . . . . .] 490 491Homo_sapiens TGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGAAACCTCACCCGGCCCGGACA----------------CGG-A-C [838] 492Rattus_norvegicus TGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGAAACCTCACCCGGCCCGGACA----------------CGG-A-C [839] 493Xenopus_laevis TGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGAAACCTCACCCGGCCCGGACA----------------CGG-A-A [834] 494A._salina TGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGAAACCTCACCAGGCCCGGACA----------------CTG-G-A [835] 495S._cerevisiae TGACGGAAGGGCACCACTAGGAGTGGAGCCTGCGGCT-AATTTGACTCAACACGGGGAAACTCACCAGGTCCAGACA----------------CAA-T-A [826] 496P.MICA TGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGGAAACTTACCAGGTCCAGACA----------------TAG-T-A [826] 497D.DISC TGACGGAAGGGCACACAATGGAGTGGAGCCTGCGGCTTAATTTGACTCAACTCGGGAAAACTTACCAAGCTAAGATA----------------TAG-T-A [829] 498T.BRUC TGACGGAATGGCACCACAAGACGTGGAGCGTGCGGTTTAATTTGACTCAACACGGGGAACTTTACCAGATCCGGACA----------------GGG-T-G [1142] 499E.GRAC TGACGGAATGGCACCACAAGGCGTGGAGTATGCGGCTTAATTTGACTCAACGCGGGGAATGTTACCAGGTCAGGACG----------------CAA-C-T [1142] 500Zea_mays TGACGGAAGGGCACCACCAGGCGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGGAAACTTACCAGGTCCAGACA----------------TAG-C-A [831] 501D._mobilis TGGCGGGGGAGCACCACAAGGGGTGGAGCCTGCGGTTCAATTGGAGTCAACGCCGGGAATCTCACCGGGGGA-GACA----------------GCA-G-G [637] 502S._solfataricus TGGCGGGGGAGCACCACAAGGGGTGGAACCTGCGGCTCAATTGGAGTCAACGCCTGGAATCTTACCGGGGGA-GACC----------------GCA-G-T [635] 503T._tenax TGGCGGGGGGGCACCACAAGGGGTGAAGCTTGCGGCTTAATTGGAGTCAACGCCGGAAACCTTACCCGGGGC-GACA----------------GCA-G-G [638] 504M._vannielii TGGCGGGGGAGCACCACAACGGGTGGAGCCTGCGGTTTAATTGGATTCAACGCCGGGCATCTCACCAGGAGC-GACA----------------GCA-T-G [638] 505MB._formicicum TGGCGGGGGAGCACCACAACGCGTGGAGCCTGCGGTTTAATTGGATTCAACGCCGGACATCTCACCAGGGGC-GACA----------------GCA-G-A [640] 506MS._hungatei TGGCGGGGGAGCACCACAACGGGTGGAGCCTGCGGTTTAATCGGACTCAACGCCGGAAATCTCACCGGATAA-GACA----------------GCT-G-A [613] 507H._volacanii TGGCGGGGGAGCACTACAACCGGAGGAGCCTGCGGTTTAATTGGACTCAACGCCGGACATCTCACCAGCTCC-GACT----------------ACA-GTG [642] 508HC._morrhuae TGGCGGGGGAGCACTACAACCGGAGGAGCCTGCGGTTTAATTGGACTCAACGCCGGACATCTCTCCGGCACC-GACA----------------GTGTGCA [644] 509H.HALO TGGCGGGGGAGCACTACAACCGGAGGAGCCTGCGGTTTAATTGGACTCAACGCCGGACATCTCACCAGCCCC-GACA----------------GTA-GTA [642] 510H._cutirubrum TGGCGGGGGAGCACTACAACCGGAGGAGCCTGCGGTTTAATTGGACTCAACGCCGGACATCTCACCAGCCCC-GACA----------------GTA-GTA [642] 511AN._nidulans TGACGGGGGCCCGC-ACAAGCGGTGGAGTATGTGGTTTAATTCGATGCAACGCGAAGAACCTTACCAGGGTTTGACAT-----CC----CCCGAAT-C-T [668] 512HE.CHL TGACGGGGGCCCGC-ACAAGCGTTGGAGCATGTGGTTTAATTCGACGCAACGCGAAGAACCTTACCAAGGCTTGACAT-----CC----TCTGAAT-C-C [652] 513Bc._subtilis TGACGGGGGCCCGC-ACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAGGTCTTGACAT-----CC----TCTGACA-A-T [691] 514MY.CAP TGACGGGGACCCGC-ACAAGTGGTGGAGCATGTGGTTTAATTCGAAGCAACACGAAGAACCTTACCAGGGCTTGACAT-----CC----AGTGTAA-A-G [679] 515E._coli TGACGGGGGCCCGC-ACAAGCGGTGGAGCATGTGGTTTAATTCGATGCAACGCGAAGAACCTTACCTGGTCTTGACAT-----CC----ACGGAAG-T-T [688] 516MYX.XA TGACGGGGGCCCGC-ACAAGCGGTGGAGCATGTGGTTTAATTCGACGCAACGCGCAGAACCTTACCTGGTCTTGACAT-----CC----TCAGAAT-C-C [688] 517P.TEST TGACGGGGACCCGC-ACAAGCGGTGGATGATGTGGTTTAATTCGATGCAACGCGAAAAACCTTACCCACCTTTGACAT-----GG----CAGGAAC-T-T [688] 518AG.TUM TGACGGGGGCCCGC-ACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGCAGAACCTTACCAGCTCTTGACAT-----TCGGGGTTTGGGC-A-G [668] 519DV.DES TGACGGGGGCCCGC-ACAAGCGGTGGAGTATGTGGTTTAATTCGATGCAACGCGAAGAACCTTACCTAGGTTTGACAT-----CC---ACGGAACC-C-T [687] 520BA.FRG TGACGGGGGCCCGC-ACAAGCGGAGGAACATGTGGTTTAATTCGATGATACGCGAGGAACCTTACCCGGGCTTAAATT-----GC----AGTGGAA-T-G [683] 521'Zea_mays_(chloroplast)' TGACGGGGGCCCGC-ACAAGCGGTGGAGCATGTGGTTTAATTCGATGCAAGGCGAAGAACCTTACCAGGGCTTGACAT-----GC----CGCGAAT-C-C [666] 522T.AMIT TGACGGGGGCCTGC-ACAAGCGGTGGAGCATGTGGTTTAATTCGATACAACGCGCAAAACCTTACCAGCCCTTGACATATGAACA----ACAAAAC-C-T [675] 523 524[ 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500] 525[ . . . . . . . . . .] 526 527Homo_sapiens AG-GATTGACA--G-ATTGA--TAGCTCTTTCTC-GATTC--CGTGGGTGGTGGTGCATGGCCGTT-CTTAGTTGGTGGAGCGATTTGTCTGGTTAATTC [928] 528Rattus_norvegicus AG-GATTGACA--G-GTTGA--TAGCTCTTTCTC-GATTC--CGTGGGTGGTGGTGCATGGCCGTT-CTTAGTTGGTGGAGCGATTTGTCTGGTTAATTC [929] 529Xenopus_laevis AG-GATTGACA--G-ATTGA--TAGCTCTTTCTC-GATTC--TGTGGGTGGTGGTGCATGGCCGTT-CTTAGTTGGTGGAGCGATTTGTCTGGTTAATTC [924] 530A._salina AG-GATTGACA--G-ATTGA--GAGCTCTTTCTT-GATTC--AGTGGGTGGTGGTGCATGGCCGTT-CTTAGTTGGTGGAGCGATTTGTCTGGTTAATTC [925] 531S._cerevisiae AG-GATTGACA--G-ATTGA--GAGCTCTTTCTT-GATTT--TGTGGGTGGTGGTGCATGGCCGTTTCTCAGTTGGTGGAGTGATTTGTCTGCTTAATTG [917] 532P.MICA AG-GATTGACA--G-ATTGA--TAGCTCTTTCTT-GATTC--TATGGGTGGTGGTGCATGGCCGTT-CTTAGTTGGTGGAGTGATTTGTCTGGTTAATTC [916] 533D.DISC AG-GATTGACA--G-ACTAA--AAGATCTTTCAT-GATTC--TATAAGTGGTGGTGCATGGTCGTT-CTTAGTTGGTGGAGCGATTTGTCTGGTCAATTC [919] 534T.BRUC AG-GATTGACA--G-ATGGA--GTGTTCTTTCTC-GATCC--CCTGAATGGTGGTGCATGGCCGCTTTT-GGTCGGTGGAGTGATTTGTTTGGTTGATTC [1232] 535E.GRAC GG-GATTGACA--G-ATTGA--GAGCTCTTTCTT-GATCT--TGTGGACGGTGGTGCATGGCCGCTCCTGA-TTGGTGGAGTGATTTGTCTGGTTGATTC [1232] 536Zea_mays AG-GATTGACA--G-ACTGA--GAGCTCTTTCTT-GATTC--TATGGGTGGTGGTGCATGGTCGTT-CTTAGTTGGTGGAGCGATTTGTCTGGTTAATTC [921] 537D._mobilis AT-GACGGCCA--G-GTTAA--AG-C-CTTGCCT-GACGC--GCTGAGAGGAGGTGCATGGCCGTC-GCCAGCTCGTGCTGTGAAGTGTCCGGTTAAGTC [725] 538S._solfataricus AT-GACGGCCA--G-GCTAA--CGAC-CTTGCCT-GACTC--GCGGAGAGGAGGTGCATGGCCGTC-GCCAGCTCGTGTTGTGAAATGTCCGGTTAAGTC [724] 539T._tenax AT-GAAGGCCA--G-GCTAA--CGAC-CTTGCCG-GACGA--GCTGAGAGGAGGTGCATGGCCGTC-GTCAGCTCGTGCCGTGAGGTGTCCGGTTAAGTC [727] 540M._vannielii AT-GACGGCCA--G-GTTGA--CGAC-CTTGCCT-GAAGC--GCTGAGAGGTGGTGCATGGCCATC-GTCAGCTCGTACCGCGAGGCGTCCTGTTAAGTC [727] 541MB._formicicum AT-GATAGCCA--G-GTTGA--TGAC-CTTGCTT-GACAA--GCTGAGAGGAGGTGCATGGCCGCC-GTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTC [729] 542MS._hungatei AT-GATAGTCG--G-GATGA--AGAC-TCTACTT-GACTA--GCTGAGAGGAGGTGCATGGCCGTC-GTCAGTTCGTACTGTGAAGCATCCTGTTTAGTC [702] 543H._volacanii AT-GACGATCA--G-GTTGA--TGAC-CTTATCA-CGACGCTGTAGAGAGGAGGTGCATGGCCGCC-GTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTC [733] 544HC._morrhuae GT-GACAGTCA--G-TCCGA--TGGG-CTTACTT-GA--GCCACTGAGAGGAGGTGCATGGCCGCC-GTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTC [733] 545H.HALO AT-GACGGTCA--G-GTTGA--TGAC-CTTACCC-G-AGGCTACTGAGAGGAGGTGCATGGCCGCC-GTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTC [732] 546H._cutirubrum AT-GACGGTCA--G-GTTGA--TGAC-CTTACCC-GGAGGCTACTGAGAGGAGGTGCATGGCCGCC-GTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTC [733] 547AN._nidulans CT-TGGAAACG--A-GAGAG--TGCC-TTCGGGA-GCGGG--G-AGACAGGTGGTGCATGGCTGTC-GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTC [756] 548HE.CHL GA-TAGAGATA--GCGGAGT--GCCC-TTCGGGGAGCAGA--G-AGACAGGTGGTGCATGGTTGTC-GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTC [742] 549Bc._subtilis CC-TAGAGATA--G-GACGT--CCCC-TTCGGGG-GCAGA--G-TGACAGGTGGTGCATGGTTGTC-GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTC [779] 550MY.CAP CTATAGAGATA--T-AGTAG--AGGT-T-----A-ACATT--G-AGACAGGTGGTGCATGGTTGTC-GTCAGTTCGTGCCGTGAGGTGTTGGGTTAAGTC [763] 551E._coli TT-CAGAGATG--A-GAATG--TGCC-TTCGGGA-ACCGT--G-AGACAGGTGCTGCATGGCTGTC-GTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTC [776] 552MYX.XA TT-CAGAGATGAGG-GAGTG--CCCG-CAAGGGA-ACTGA--G-AGACAGGTGCTGCATGGCTGTC-GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTC [778] 553P.TEST AC-CAGAGATG--G-TTTGGTGCTCG-AAAGAGA-ACCTG--C-ACACAGGTGCTGCATGGCTGTC-GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTC [778] 554AG.TUM TG-GAGACATT--G-TCCTT--CAGT-TAGGCTG-GCCCC--A-GAACAGGTGCTGCATGGCTGTC-GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTC [756] 555DV.DES CC-CGAAAAGG--A-GGGGT--GCCC-TTCGGGGAGCCGT--G-AGACAGGTGCTGCATGGCTGTC-GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTC [776] 556BA.FRG ATGTGGAAACA--T-GTCAG--TGAG-CAATCAC--CGCT--G-TGA-AGGTGCTGCATGGTTGTC-GTCAGCTCGTGCCGTGAGGTGTCGGCTTAAGTG [770] 557'Zea_mays_(chloroplast)' TC-TTGAAAGA--G-AGGGG--TGCC-CTCGGGA-ACGCG--G-ACACAGGTGGTGCATGGCTGTC-GTCAGCTCGTGCCGTAAGGTGTTGGGTTAAGTC [754] 558T.AMIT GT-CCTTAACA--G-GATGG--TACT-------G-ACTTT--C-ATACAGGTGCTGCATGGCTGTC-GTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTC [757] 559 560[ 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600] 561[ . . . . . . . . . .] 562 563Homo_sapiens CGATAACGAACGAGACTCTGGCATGCTAA-CTAGTT-AC--G--------------------------------------C-GACC----------CCCG [975] 564Rattus_norvegicus CGATAACGAACGAGACTCTGGCATGCTAA-CTAGTT-AC--G--------------------------------------C-GACC----------CC-G [975] 565Xenopus_laevis CGATAACGAACGAGACTCCTCCATGCTAA-CTAGTT-AC--G--------------------------------------C-GACC----------CC-C [970] 566A._salina CGATAACGAACGAGACTCTAGCCTGCTAA-ATAG-A-CG--ATGGATC--------------------------------C-TAGT----------GG-T [976] 567S._cerevisiae CGATAACGAACGAGACCTTAACCTACTAA-ATAGTG-GT--G--------------------------------------C-TAGC----------AT-T [963] 568P.MICA CGTTAACGAACGAGACCTTAACCTGCTAA-ATAGTT-AC--A--------------------------------------CGTAAC----------TC-C [963] 569D.DISC CGATAACGGACGAGACCTCGACCTGCTAA-CTAGTA-GT--ATTTATTAGTCGATATAGACGATAGCTTTTCTGGGGTTTG-GAAT----------GA-T [1003] 570T.BRUC CGTCAACGGACGAGATCC-AAGCTGCCCA-GTAG---GT--G--------------------------------------C-CGGG----------AT-T [1275] 571E.GRAC CGATAACGAGTGAGACATCTGCCTCCCACTAGCCTG-AG--G--------------------------------------C-TCGC----------AT-T [1279] 572Zea_mays CGTTAACGAACGAGACCTCAGCCTGCTAA-CTAGCT-AT--G--------------------------------------C-GGAG----------CC-A [967] 573D._mobilis CGGAAACGAGCGAGACCCCCACCC-CTAG-TTGCTA-CC--C-----------------------------------------GGG----------GC-T [768] 574S._solfataricus CGGCAACGAGCGAGACCCCCACCC-CTAG-TTGGTA-TT--C-----------------------------------------TGG----------AC-T [767] 575T._tenax CGGCAACGAGCGAGACCCCCACCC-CTAG-TTGCTA-CC--C-----------------------------------------CGC----------TC-T [770] 576M._vannielii AGGTAACGAGCGAGACCCGTGCCC-TATG-TTGCGA-CT--A-----------------------------------------CTT----------TC-T [770] 577MB._formicicum AGGCAACGAGCGAGACCCACGCCC-TTAG-TTACCA-GC--G-----------------------------------------GAT----------CC-T [772] 578MS._hungatei AGGCAACGAGCGAGACCCACGCGA-GCAG-TTGCCAGCT--T-----------------------------------------GAC----------CT-T [746] 579H._volacanii AGGCAACGAGCGAGACCCGCACTT-CTAA-TTGCCA-GCAGC-----------------------------------------CAG----------T--T [777] 580HC._morrhuae AGGCAACGAGCGAGACCCGCGTCC-CTAA-TTGCCA-GCAGC-----------------------------------------CAG----------CC-T [778] 581H.HALO AGGCAACGAGCGAGACCCGCACTC-CTAA-TTGCCA-GCGGT-----------------------------------------TAC----------CC-T [777] 582H._cutirubrum AGGCAACGAGCGAGACCCGCACTC-CTAA-TTGCCA-GCAGT-----------------------------------------TAC----------CC-T [778] 583AN._nidulans CCGCAACGAGCGCAACCCACGTTT-TTAG-TTGCCA-TC--A-----------------------------------------TTC----------AG-T [799] 584HE.CHL CCGCAACGAGCGCAACCCTTATCC-CTAG-TTGCCA-GCG-A-----------------------------------------GAG----------AG-T [786] 585Bc._subtilis CCGCAACGAGCGCAACCCTTGATC-TTAG-TTGCCA-GC--A-----------------------------------------TTC----------AG-T [822] 586MY.CAP CCGCAACGAACGCAACCCTTGTCG-TTAG-TTACTA-AC--A-----------------------------------------TTA----------AG-T [806] 587E._coli CCGCAACGAGCGCAACCCTTATCC-TTTG-TTGCCA-GC--G-G---------------------------------------TCC----------GG-C [820] 588MYX.XA CCGCAACGAGCGCAACCCTCGCCT-TTAG-TTGCCA-----------------------------------------------CGC----------AA-G [818] 589P.TEST CCGCAACGAGCGCAACCCTTGCCA-TTAG-TTGCTA--C--A-----------------------------------------TTC----------AG-T [820] 590AG.TUM CCGCAACGAGCGCAACCCTCGCCC-TTAG-TTGCCA-GC--A-----------------------------------------TTT----------AG-T [799] 591DV.DES CCGCAACGAGCGCAACCCCTATGG-ATAG-TTGCCA-GC--AAG---------------------------------------TAA----------TG-T [821] 592BA.FRG CCATAACGAGCGCAACCCTTATCT-TTAG-TTACTA-AC--AGG---------------------------------------TTA----------TG-C [815] 593'Zea_mays_(chloroplast)' TCGCAACGAGCGCAACCCTCGTGT-TTAG-TTGCCA-CT--A------------------------------------------TG----------AG-T [796] 594T.AMIT CTATAACGAGCGAAACCCTCGTTT-TGTG-TTGCTG-AG--A-C---------------------------------------ATGCGC????GTGCG-T [811] 595 596[ 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700] 597[ . . . . . . . . . .] 598 599Homo_sapiens AGCGGTCGGCGT---------------------------------------------------------------------------CCCCC-------- [992] 600Rattus_norvegicus AGCGCTCGGCGT---------------------------------------------------------------------------CCCCC-------- [992] 601Xenopus_laevis GGCGGTCGGCGT---------------------------------------------------------------------------CCA---------- [985] 602A._salina GG-----ATCGC---------------------------------------------------------------------------T------------ [984] 603S._cerevisiae TG---CTGGTTA---------------------------------------------------------------------------TCC---------- [975] 604P.MICA GG---TTACGTG---------------------------------------------------------------------------GGC---------- [975] 605D.DISC TTCGGTCATCTC---------------------------------------------------------------------------CTGCTTCAAGGAG [1028] 606T.BRUC GT---CCACACA----------GGACAGCAGTCCCTCCGGC-----GGGGATTTTTTCCCCAACG-GTGGTCGTCATCCTTCTTTTTACA---------- [1346] 607E.GRAC TG---GTAGGGTTCGGCTGCTCGG-TGGCAGCCCC-CTGGCAACAGGGGGAGATGTACCGGTGCATGCTCCCGAGAGCCTCCAGT--TCA---------- [1362] 608Zea_mays TC---CCGCTAG---------------------------------------------------------------------------TTA---------- [979] 609D._mobilis AC---GGCTCCG---------------------------------------------------------------------------GGG---------- [780] 610S._solfataricus CC---CGGTCCA---------------------------------------------------------------------------GAA---------- [779] 611T._tenax TC---GGGGCGG---------------------------------------------------------------------------GGG---------- [782] 612M._vannielii CC---GGAA-GG---------------------------------------------------------------------------TAA---------- [781] 613MB._formicicum TC---GGGATGC---------------------------------------------------------------------------CGG---------- [784] 614MS._hungatei CG---GGTT-GA---------------------------------------------------------------------------TGG---------- [757] 615H._volacanii TC---GACTGGC---------------------------------------------------------------------------TGG---------- [789] 616HC._morrhuae TG---TGCTGGC---------------------------------------------------------------------------TGG---------- [790] 617H.HALO TT---GGGTAGC---------------------------------------------------------------------------TGG---------- [789] 618H._cutirubrum TT---GGGTAGC---------------------------------------------------------------------------TGG---------- [790] 619AN._nidulans T---------------------------------------------------------------------------------------GG---------- [802] 620HE.CHL C---------------------------------------------------------------------------------------GG---------- [789] 621Bc._subtilis T---------------------------------------------------------------------------------------GG---------- [825] 622MY.CAP T---------------------------------------------------------------------------------------GA---------- [809] 623E._coli C---------------------------------------------------------------------------------------GG---------- [823] 624MYX.XA T---------------------------------------------------------------------------------------GG---------- [821] 625P.TEST T---------------------------------------------------------------------------------------GA---------- [823] 626AG.TUM T---------------------------------------------------------------------------------------GG---------- [802] 627DV.DES T---------------------------------------------------------------------------------------GG---------- [824] 628BA.FRG T---------------------------------------------------------------------------------------GA---------- [818] 629'Zea_mays_(chloroplast)' T---------------------------------------------------------------------------------------TG---------- [799] 630T.AMIT G---------------------------------------------------------------------------------------CC---------- [814] 631 632[ 1710 1720 1730 1740 1750 1760 1770 1780 1790 1800] 633[ . . . . . . . . . .] 634 635Homo_sapiens -------------------------------AA----CTTCTTAGAGGGACAAG---TGG--CG-TT-CAGCCA---CCCGAGATTGA-GCAATAACAGG [1046] 636Rattus_norvegicus -------------------------------AA----CTTCTTAGAGGGACAAG---TGG--CG-TT-CAGCCA---CC-GAGATTGA-GCAATAACAGG [1045] 637Xenopus_laevis --------------------------------A----CTTCTTAGAGGGACAAG---TGG--CG-TT-CAGCCA--CAC-GAGATCGA-GCAATAACAGG [1038] 638A._salina -------------------------------------CTTCTTAGAGGGACAAG---TGG--CG-TC-TAGCCA--TAT-GAGAGTGA-GCAATAACAGG [1036] 639S._cerevisiae --------------------------------A----CTTCTTAGAGGGACTAT---CGG--TT-TC-AAGCCG-ATGG-AAGTTTGAGGCAATAACAGG [1030] 640P.MICA --------------------------------A----ACTTTTAGAGGGACTTT---GCG--TG-TC-TAACGC-AAGG-AAGTTTGAGGCAATAACAGG [1030] 641D.DISC TGTGTAGTCTGACTCGATAGGTACGAATTAAAA----CTTCTTAGAGGGACTAC---CTG--CC-TC-AAGCAG-GCGG-AAGTCCGAGGCAATAACAGG [1115] 642T.BRUC --------------------------------GGCCCCTTCTCTGCGGGATTCC---TTGCTTT-TC-GCGCAA-GGTG-AGATTTTGGGCAACAGCAGG [1407] 643E.GRAC --------------------------------G----CTTCTCTGAGGTGCTGTGTCCGC--CA-CA-AAGGGC-ATGC-ATGCTAGAGCCAACAGCAGG [1420] 644Zea_mays --------------------------------G----CTTCTTAGAGGGACTAT---GGC--CG-TT-TAGGCC-G-CG-AAGTTTGAGGCAATAACAGG [1033] 645D._mobilis -------------------------------------CACACTAGGGGGACTGC---CGC--CG-TTTAAGGCG-GAGG-AAGGAGGGGGCCACGGCAGG [835] 646S._solfataricus --------------------------------C----CACACTAGGGGGACTGC---CGG--CG-T--AAGCCG-GAGG-AAGGAGGGGGCCACGGCAGG [833] 647T._tenax --------------------------------G----CACACTAGGGGGACTGC---CGG--CG-T--AAGCCG-GAGG-AAGGAGGGGGCGACGGCAGG [836] 648M._vannielii --------------------------------G----CACTCATAGGGGACCGC---TAG--CGCT--AAGCTA-GAGG-AAGGAGCGGGCAACGATAGG [836] 649MB._formicicum --------------------------------G----CACACTAAGGGGACCGC---CAG--TGAT--AAACTG-GAGG-AAGGAGTGGACGACGGTAGG [839] 650MS._hungatei --------------------------------G----GACACTGCTCGGACCGC---CTC--TGCT--AAAGGG-GAGG-AAGGAATGGGCAACGGTAGG [812] 651H._volacanii --------------------------------G----TACATTAGAAGGACTGC---CGC--TG-CT-AAAGCG-GAGG-AAGGAACGGGCAACGGTAGG [844] 652HC._morrhuae --------------------------------G----TACATTAGGGAGACTGC---CGT--CG-CT-AAGACG-GAGG-AAGGAACGGGCAACGGTAGG [845] 653H.HALO --------------------------------G----TACATTAGGTGGACTGC---CGC--TG-CC-AAAGCG-GAGG-AAGGAACGGGCAACGGTAGG [844] 654H._cutirubrum --------------------------------G----TACATTAGGTGGACTGC---CGC--TG-CC-AAAGCG-GAGG-AAGGAACGGGCAACGGTAGG [845] 655AN._nidulans --------------------------------G----CACTCTAGAGAAACTGC---CGG--TGAC--AAACCG-GAGG-AAGGTGTGGACGACGTCAAG [857] 656HE.CHL --------------------------------G----GACTCTAGGGAGACTGC---CCG--GGAC--GACCGG-GAGG-AAGGCGGGGATGACGTCAAA [844] 657Bc._subtilis --------------------------------G----CACTCTAAGGTGACTGC---CGG--TGAC--AAACCG-GAGG-AAGGTGGGGATGACGTCAAA [880] 658MY.CAP --------------------------------G----AACTCTAACGAGACTGC---TAG--TG-T--AAGCTA-GAGG-AAGGTGGGGATGACGTCAAA [863] 659E._coli --------------------------------G----AACTCAAAGGAGACTGC---CAG--TGAT--AAACTG-GAGG-AAGGTGGGGATGACGTCAAG [878] 660MYX.XA --------------------------------A----T-CTCTAGAGGGACTGC---CGG--TGTT--AAACCG-GAGG-AAGGTGGGGATGACGTCAAG [875] 661P.TEST --------------------------------G----CACTCTAATGGGACTGC---CGG--TGAC--AAACCG-GAGG-AAGGTGGGGATGACGTCAAG [878] 662AG.TUM --------------------------------G----CACTCTAAGGGGACTGC---CGG--TGAT--AAGCCGAGAGG-AAGGTGGGGATGACGTCAAG [858] 663DV.DES --------------------------------G----CACTCTATTCAGACTGC---CCG--GGTT--AACCGG-GAGG-AAGGTGGGGACGACGTCAAG [879] 664BA.FRG --------------------------------G----GACTCTAGAGAGACTGC---CGT--CGTA--AGATGT-GAGG-AAGGTGGGGATGACGTCAAA [873] 665'Zea_mays_(chloroplast)' --------------------------------G----AACCCTGAACAGACCGC---CGG--TGTT--AAGCCG-GAGG-AAGGAGAGGATGAGGCCAAG [854] 666T.AMIT --------------------------------G----CACTCACGAGGGACTGC---CAG--TGAG--ATACTG-GAGG-AAGGTGGGGATGACGTCAAG [869] 667 668[ 1810 1820 1830 1840 1850 1860 1870 1880 1890 1900] 669[ . . . . . . . . . .] 670 671Homo_sapiens TCTGTGATGCCCTTAGA-TGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTG-TGCCTA------------------------CCCTACGCC [1120] 672Rattus_norvegicus TCTGTGATGCCCTTAGA-TGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTG-TGCCTA------------------------CCCTACGCC [1119] 673Xenopus_laevis TCTGTGATGCCCTTAGA-TGTCCGGGGCTGCACGCGCGCTACACTGAACGGATCAGCGTG-TGTCTA------------------------CCCTGCGCC [1112] 674A._salina TCTGTGATGCCCTTAGA-TGTCCTGGGCCGCACGCGCGCTACACTGGAAGAATCAGCGCG-T--CC-------------------------TCCCTGTCC [1107] 675S._cerevisiae TCTGTGATGCCCTTAGAACGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAG-T--CTA------------------------ACCTTGGCC [1103] 676P.MICA TCTGTGATGCCCTTAGA-TGTTCTGGGCTGCACGCGCGCTACACTGATGCGTTCAACGAG-T--TTA----------------------TGCACTTGCCC [1104] 677D.DISC TCTGTGATGCCCTTAGA-TACCTTGGGCCGCACGCGCGCTACAATGTAGGAAACAAAAAG-G--CT--------------------------CCTGGTCC [1185] 678T.BRUC TCTGTGATGCTCCTCAA-TGTTCTGGGCGACACGCGCACTACAATGTCAGTGAGAACAAG-AGTCCGAGCGGCACTTCACAATGTCGCTCCCGCTTGATC [1505] 679E.GRAC TCTGTGATGCTCCCAGA-TGTCCTGGGCCGCACGCGCACTACATTGTCACAGTGAAGGTG-T--CGA-------CATGCCCACTCCGGTGGGCCCTGGCC [1509] 680Zea_mays TCTGTGATGCCCTTAGA-TGTTCTGGGCCGCACGCGCGCTACACTGATGTATCCAACGAG-TATATA------------------------GCCTTGGCC [1107] 681D._mobilis TCAGC-ATGCCCCGAAC--CCCCCGGGCTACACGCGGGCTACAATGGCGGGGACAGCGGGAT--CCG------------------------ACC----CC [902] 682S._solfataricus TCAGC-ATGCCCCGAAA--CTCCCGGGCCGCACGCGGGTTACAATGGCAGGGACAACGGGAT--GCT------------------------ACC----TC [900] 683T._tenax TCAGT-ATGCCCCGAAA--CCCCGGGGCTGCACGCGAGCTGCAATGGCGGGGACAGCGGGAT--CCG------------------------ACC----CC [903] 684M._vannielii TCCGC-ATGCCCCGAAT--CTCCTGGGCTACACGCGGGCTACAATGGCTAGGACAATGGGCT--GCT------------------------ACC----CT [903] 685MB._formicicum TCCGT-ATGCCCCGAAT--CCCCTGGGCTACACGCGGGCTACAATGGTTAGGACAATGGGTT--CCG------------------------ACA----CT [906] 686MS._hungatei TCAGC-ATGCCCCGAAT--TATCCGGGCTACACGCGGGCTACAATGGACAGGACAATGGGTT--TCG------------------------ACA----CC [879] 687H._volacanii TCAGT-ATGCCCCGAAT--GAGCTGGGCTACACGCGGGCTACAATGGTCGAGACAATGGGTT--GCT------------------------ATC----TC [911] 688HC._morrhuae TCAGT-ATGCCCCGAAT--GTGCCGGGCGACACGCGGGCTACAATGGCCGAGACAGTGGGAC--GCT------------------------ACC----CC [912] 689H.HALO TCAGT-ATGCCCCGAAT--GGGCTGGGCAACACGCGGGCTACAATGGTCGAGACAATGGGAA--GCC------------------------ACT----CC [911] 690H._cutirubrum TCAGT-ATGCCCCGAAT--GGGCTGGGCAACACGCGGGCTACAATGGTCGAGACAATGGGAA--GCC------------------------ACT----CC [912] 691AN._nidulans TCATC-ATGCCCCTTAC--ATCCTGGGCTACACACGTACTACAATGCTCCGGACAGCGAGAC--GCG------------------------AAG----CC [924] 692HE.CHL TCATC-ATGCCCCTTAT--GTCTTGGGCTACACACGTGCTACAATGGGCGGTACAAACCGAA--GCG------------------------AAG----CC [911] 693Bc._subtilis TCATC-ATGCCCCTTAT--GACCTGGGCTACACACGTGCTACAATGGACAGAACAAAGGGCA--GCG------------------------AAA----CC [947] 694MY.CAP TCATC-ATGCCCCTTAT--GTCCTGGGCTACACACGTGCTACAATGGCTGGTACAAAGAGTT--GCA------------------------ATC----CT [930] 695E._coli TCATC-ATGGCCCTTAC--GACCAGGGCTACACACGTGCTACAATGGCGCATACAAAGAGAA--GCG------------------------ACC----TC [945] 696MYX.XA TCCTC-ATGGCCTTTAT--GACCAGGGCTACACACGTGCTACAATGGCCGGTACAGAGCGTT--GCC------------------------AAC----CC [942] 697P.TEST TCCTC-ATGGCCCTTAT--AGGTGGGGCTACACACGTCATACAATGGCTGGTACAAAGGGTT--GCC------------------------AAC----CC [945] 698AG.TUM TCCTC-ATGGCCCTTAC--GGGCTGGGCTACACACGTGCTACAATGGTGGTGACAGTGGGCA--GCG------------------------AGA----CA [925] 699DV.DES TCATC-ATGGCCCTTAC--GCCTAGGGCTACACACGTACTACAATGGCGCGCACAAAGGGGA--GCG------------------------AGA----CC [946] 700BA.FRG TCAGC-ACGGCCCTTAC--GTCCGGGGCTACACACGTGTTACAATGGGGGGTACAGAAGGCA--GCT------------------------AGC----GG [940] 701'Zea_mays_(chloroplast)' TCATC-ATGCCCCTTAT--GCCCTGGGCGACACACGTGCTACAATGGGCGGGACAAAGGGTC--GCG------------------------ATC----TC [921] 702T.AMIT TCCGC-ATGGCCCTTAT--GGGCTGGGCCACACACGTGCTACAATGGCAATGACAATGGGAA--GCA------------------------AGG----CT [936] 703 704[ 1910 1920 1930 1940 1950 1960 1970 1980 1990 2000] 705[ . . . . . . . . . .] 706 707Homo_sapiens -GGCAGGCGCGGG-TAACCCGTTGAA-CCCCATTCGTGATGGGGATCGGGGATTGCAATTATTCCCCAT-GAACGAGGAATTCCCAGTAAGTGCGGGTCA [1216] 708Rattus_norvegicus -GGCAGGCGCGGG-TAACCCGTTGAA-CCCCATTCGTGATGGGGATCGGGGATTGCAATTATTCCCCAT-GAACGAGGAATTCCCAGTAAGTGCGGGTCA [1215] 709Xenopus_laevis -GACAGGTGCGGG-TAACCCGCTGAA-CCCCGTTCGTGATAGGGATCGGGGATTGCAATTATTTCCCAT-GAACGAGGAATTCCCAGTAAGTGCGGGTCA [1208] 710A._salina -GAGAGGACCGGG-TAACC-GCTGAA-CCTCTTCCGTGGTTGGGATTGGGGACTGCAAGGATC-CCCAT-GAACCAGGAATCCCTAGTAGGCGCAAGTCA [1201] 711S._cerevisiae -GAGAGGTCTTGG-TAATCTTGTGAA-ACTCCGTCGTGCTGGGGATAGAGCATTGTAATTATTGCTCTT-CAACGAGGAATTCCTAGTAAGCGCAAGTCA [1199] 712P.MICA -GATAGGGTTTGGGTAATCTTTTTAA-ATCGCATCGTGATGGGGATAGATTATTGCAATTATTAATCTT-CAACGAGGAATTCCTAGTAAGCGCGAGTCA [1201] 713D.DISC -GGAAGGATTGGG-TAATCATTTGAA-TTTCCTACGTAACTGGGCTTGATCTTTGTAATTATTGATCAT-AAACGAGGAATTCCTTGTAAGCGTAAGTCA [1281] 714T.BRUC -AAAAGAGCGGGG-AAACCACGGAATCACGTAGACCCACTTGGGACCGAGTATTGCAATTATTGGTCGCGCAACGAGGAATGTCTCGTAGGCGCAGCTCA [1603] 715E.GRAC TGAAGAGGCTGGG-AAATCCTGCAAG-CCTGTGACGTACTGGGGATAGATGGTTGCAACTGTCTGCCTT-GAACGTGGAATGCCTAGTATGCCTGGGTCA [1606] 716Zea_mays -GACAGGC-CGGT-AATCTTGGGAAA-TTTCATGCGTGATGGGGATAGATCATTGCAATTGTTGGTCTT-CAACGAGGAATGCCTAGTAAGCGCGAGTCA [1202] 717D._mobilis -GAAAGGGGAGGC-GAATCCCTC-AA-ACCCCGCCGTGGTTGGGATCGAGGGCTGCAACTCGCCCTCGT-GAACGAGGAATCCCTAGTAACCGCGCGTCA [997] 718S._solfataricus -GAAAGGGGGAGC-CAATCCTT--AA-ACCCTGCCGCAGTTGGGATCGAGGGCTGAAACCCGCCCTCGT-GAACGAGGAATCCCTAGTAACCGCGGGTCA [994] 719T._tenax -GAAAGGGGGAGG-CAATCCCGT-AA-ACCCCGCCCCAGTAGGGATCGAGGGCTGCAACTCGCCCTCGT-GAACGTGGAATCCCTAGTAACCGCGTGTCA [998] 720M._vannielii -GAAAAGGGACGC-GAATCTCCG-AA-ACCTAGTCGTAGTTCGGATCGTGGGCTGTAACTCGCCCACGT-GAAGCTGGAATCCGTAGTAATCGCAGTTCA [998] 721MB._formicicum -GAAAGGTGGAGG-TAATCTCCT-AA-ACCTGGCCTTAGTTCGGATTGAGGGCTGTAACTCGCCCTCAT-GAAGCTGGAATGCGTAGTAATCGCGTGTCA [1001] 722MS._hungatei -GAGAGGTGAGGA-TAATCTCCT-AA-ACCTGTCCGAAGTTCGGATTGCGGGTTGTAACTCACCCGCAT-GAAGCTGGAATCCGTAGTAATCGCGTTTCA [974] 723H._volacanii -GAAAGAGAACGC-TAATCTCCT-AA-ACTCGATCGTAGTTCGGATTGAGGGCTGAAACTCGCCCTCAT-GAAGCTGGATTCGGTAGTAATCGCATTTCA [1006] 724HC._morrhuae -GAGAGGGGACGC-TAATCTCCT-AA-CCTCGGTCGTAGTTCGGATTGCGGGTTGAAACCCACCCGCAT-GAAGCTGGATTCGGTAGTAATCGCATTTCA [1007] 725H.HALO -GAGAGGAGGCGC-TAATCTCCT-AA-ACTCGATCGTAGTTCGGATTGAGGGCTGAAACTCGCCCTCAT-GAAGCTGGATTCGGTAGTAATCGCGTGTCA [1006] 726H._cutirubrum -GAGAGGAGGCGC-TAATCTCCT-AA-ACTCGATCGTAGTTCGGATTGAGGGCTGAAACTCGCCCTCAT-GAAGCTGGATTCGGTAGTAATCGCGTGTCA [1007] 727AN._nidulans -GCGAGGTGAAGC-AAATCTCCC-AA-ACCGGGGCTCAGTTCAGATTGCAGGCTGCAACTCGCCTGCAT-GAAGGCGGAATCGCTAGTAATCGCAGGTCA [1019] 728HE.CHL -GAGAGGTGGAGC-GAACCGGAG-AA-AGCCGTTCCCAGTTCGGATTGCTCTCTGCAACTCGAGAGCAT-GAAGGCGGAATCGCTAGTAATCGCGGGTCA [1006] 729Bc._subtilis -GCGAGGTTAAGC-CAATCCCAC-AA-ATCTGTTCTCAGTTCGGATCGCAGTCTGCAACTCGACTGCGT-GAAGCTGGAATCGCTAGTAATCGCGGATCA [1042] 730MY.CAP -GTGAAGGGGAGC-TAATCTCAA-AA-AACCAGTCTCAGTTCGGATTGAAGTCTGCAACTCGACTTCAT-GAAGCCGGAATCACTAGTAATCGCGAATCA [1025] 731E._coli -GCGAGAGCAAGC-GGACCTCAT-AA-AGTGCGTCGTAGTCCGGATTGGAGTCTGCAACTCGACTCCAT-GAAGTCGGAATCGCTAGTAATCGTGGATCA [1040] 732MYX.XA -GCGAGGGGGAGC-TAATCGCAT-AA-AACCGGTCTCAGTTCAGATTGGAGTCTGCAACTCGACTCCAT-GAAGGAGGAATCGCTAGTAATCGCAGATCA [1037] 733P.TEST -GCGAGGGGGAGC-TAATCCCAT-AA-AGCCAGTCGTAGTCCGGATCGCAGTCTGCAACTCGACTGCGT-GAAGTCGGAATCGCTAGTAATCGTGGATCA [1040] 734AG.TUM -GCGATGTCGAGC-TAATCTCCA-AA-AGCCAT-CTCAGTTCGGATTGCACTCTGCAACTCGAGTGCAT-GAAGTTGGAATCGCTAGTAATCGCAGATCA [1019] 735DV.DES -GCGAGGTGGAGC-CAATCCCAA-AA-AACGCGTCCCAGTCCGGATTGCAGTCTGCAACTCGACTGCAT-GAAGTTGGAATCGCTAGTAATTCGAGATCA [1041] 736BA.FRG -GTGACCGTATGC-TAATCCCA--AA-ATCCTCTCTCAGTTCGGATCGAAGTCTGCAACCCGACTTCGT-GAAGCTGGATTCGCTAGTAATCGCGCATCA [1034] 737'Zea_mays_(chloroplast)' -GCGAGGGTGAGC-TAACTCCAA-AA-ACCCGTCCTCAGTTCGGATTGCAGGCTGCAACTCGCCTGCAT-GAAGCAGGAATCGCTAGTAATCGCCGGTCA [1016] 738T.AMIT -GTAAGGCGGAGC-GAATC-CGG-AA-AGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGGGAACAT-GAAGTTGAAATCGCTAGTAATCGCGGATCA [1030] 739 740[ 2010 2020 2030 2040 2050 2060 2070 2080 2090 2100] 741[ . . . . . . . . . .] 742 743Homo_sapiens TA-AGCTTGCGTTGATTAAGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGCTTGACTATCTAGAGGAAGTAAAAGTCG [1315] 744Rattus_norvegicus TA-AGCTTGCGTTGATTAAGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGCTTGACTATCTAGAGGAAGTAAAAGTCG [1314] 745Xenopus_laevis TA-AGCTCGCGTTGATTAAGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGCTTGACTATCTAGAGGAAGTAAAAGTCG [1307] 746A._salina TT-AGCTTGCGTCGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAATGATTTAGCTTGATCCTTTAGAGGAAGTAAAAGTCG [1300] 747S._cerevisiae TC-AGCTTGCGTTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTAGTACCGATTGAATGGCTTAGCTTGGTCATTTGGAGGAACTAAAAGTCG [1298] 748P.MICA TC-AGCTCGTGCTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATTGAGTG-----ACCTTATCACTTAGAGGAAGGAGAAGTCG [1295] 749D.DISC TT-ACCTTATGCTGAATATGTCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATCGAATGATACGGTCTCATTGTTTAGAGGAAGGAGAAGTCG [1380] 750T.BRUC TC-AAACTGTGCCGATTACGTCCCTGCCATTTGTACACACCGCCCGTCGTTGTTTCCGAT--GATGGTGCAAATTGCTTCAATAGAGGAAGCAAAAGTCG [1700] 751E.GRAC TC-AGCCCAGACCGATTGTGTCCCTGCCATTTGTACACACCGCCCGTCGTTGCTACCGATGG--TGGCTGGAGTCCAGCCACTAGAGGAAGCAAAAGTCG [1703] 752Zea_mays TC-AGCTCGCGTTGACTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGCCTTATCATTTAGAGGAAGGAGAAGTCG [1301] 753D._mobilis AC-ATCGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCCGTCGCTCCACCCGAGGGGAGG-GGGAGCTCCCCCTCCCTGAGGGGGGAGAAGTCG [1095] 754S._solfataricus AC-AACCCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCCGTCGCTCCACCCGAGCGCGAA-AGGGGCTCCTTTCCCGCGAGGGGGGAGAAGTCG [1092] 755T._tenax CC-AACGCGCGGTGAATACGTCCCTGCCCCTTGCACACACCGCCCGTCGCACCACCCGAGGGAGTT-CTCTGCAGAGAACTCCCGAGGGGGGTGAAGTCG [1096] 756M._vannielii TA-ATACTGCGGTGAATGTGTCCCTGCTCCTTGCACACACCGCCCGTCACACCACCCGAGTTGGGT-TCAGGCCTGGGCTCAGCGAGGGGGGTGAAGTCG [1096] 757MB._formicicum TA-ACCGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCCGTCACGCCACCCAAAAAGGGT-TTGGATCTAGGTTCTTTGAGGAGGGCGAAGTCG [1099] 758MS._hungatei AC-ATAGCGCGGTGAATATGTCCCTGCTCCTTGCACACACCGCCCGTCAAACCACCCGAGTGAGGT-CTTGATCTGGGTTTTGCAAGGGGGGTTAAGTCG [1072] 759H._volacanii AT-AGAGTGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCCGTCAAAGCACCCGAGTGAGGT-CCGGA-------TTCGCAAGGGGGCTTAAGTCG [1097] 760HC._morrhuae GA-AGAGTGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCCGTCAAATCACCCGAGTGAGGT-CCGGA-------TTCGCAAGGGGGATTAAGTCG [1098] 761H.HALO GC-AGCGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCCGTCAAATCACCCGAGTGGGGT-TCGGA-------TCCGCAAGGGGGATTAAGTCG [1097] 762H._cutirubrum GC-AGCGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCCGTCAAATCACCCGAGTGGGGT-TCGGA-------TCCGCAAGGGGGATTAAGTCG [1098] 763AN._nidulans GC-ATACTGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGAAGTTGGCC-ATGCCGGTAGGGCTGATGACTGGGGTGAAGTCG [1117] 764HE.CHL GC-ATACCGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCACGAAAGTCGGCA-ACACCGGTGGGGTCGATGATTGGGGTGAAGTCG [1104] 765Bc._subtilis GC-ATGCCGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCACGAGAGTTTGTA-ACACCGGTGGGACAGATGATTGGGGTGAAGTCG [1140] 766MY.CAP GCTATGTCGCGGTGAATACGTTCTCGGGTCTTGTACACACCGCCCGTCACACCATGAGAGTTGGTA-ATACCGGTAGGACTAGCGATTGGGGTGAAGTCG [1124] 767E._coli GA-ATGCCACGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTGGGTT-GCAAATTTGTGATTCATGACTGGGGTGAAGTCG [1138] 768MYX.XA GC-ACGCTGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTCGATT-GCTCCGGAGTGGTCGGTAACTGGGGTGAAGTCG [1135] 769P.TEST GA-ATGTCACGGTGAATACGTTCCCGGGTCTTGTACACACCGCCCGTCACACCATGGGAGCGGGTC-TCGCCGGCGGGGTTCGTGACTGGGGTGAAGTCG [1138] 770AG.TUM GC-ATGCTGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTTGGTT-TTACCGGTAGGGTCAGCGACTGGGGTGAAGTCG [1117] 771DV.DES GC-ATGCTCGGGTGAATGCGTTCCCGGGCCTTGTACACACCGCCCGTCACACCACGAAAGTCGGTT-TTACCGGTAGGGCCGATGATTGGGGTGAAGTCG [1139] 772BA.FRG GCCACGGCGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCAAGCCATGGGAGCCGGGG-GTACCGGTAAAACTGGTGACTGGGGCTAAGTCG [1133] 773'Zea_mays_(chloroplast)' GCCATACGGCGGCGAATCCGTTCCCGGGCCTTGTACACACCGCCCGTCACACTATAGGAGCTGGCC-AGGTTGGCTAGGCTTGCGACTGGAGTGAAGTCG [1115] 774T.AMIT GC-ATGCCGCGGTGAATATGTACCCGGGCCCTGTACACACCGCCCGTCACACCCTGGGAATTGGTT-TCGCCGGTGGGGTCTTCGACTGGGGTGAAGTCG [1128] 775 776[ 2110 2120 2130 2140 ] 777[ . . . . ] 778 779Homo_sapiens TAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA------- [1355] 780Rattus_norvegicus TAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA------- [1354] 781Xenopus_laevis TAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA------- [1347] 782A._salina TAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA------- [1340] 783S._cerevisiae TAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA------- [1338] 784P.MICA TAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTC------- [1335] 785D.DISC TAACAAGGTATCCGTAGGTGAACCTGCGGATGGATCATTTT------ [1421] 786T.BRUC TAACAAGGTAGCTGTAGGTGAACCTGCAGCTGGATCATTT------- [1740] 787E.GRAC TAACAAGGTTGCTGTAGGTGAACCTGCAGCAGGATCATTG------- [1743] 788Zea_mays TAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTG------- [1341] 789D._mobilis TAACAAGGTAGCCGTACCGGAAGGTGCGGCTGGATCACCTCCT---- [1138] 790S._solfataricus TAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCA----- [1134] 791T._tenax TAACAAGGTAGCCGTAGGGGAACCTGCTTCTGGATCACCTCC----- [1138] 792M._vannielii TAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCC----- [1138] 793MB._formicicum TAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCT---- [1142] 794MS._hungatei TAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT---- [1115] 795H._volacanii TAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT---- [1140] 796HC._morrhuae TAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT---- [1141] 797H.HALO TAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT---- [1140] 798H._cutirubrum TAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT---- [1141] 799AN._nidulans TAACAAGGTAGCCGTACCGGAAGGTGTGGCTGGATCACCTCCTTT-- [1162] 800HE.CHL TAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATCACCTCCTTTCT [1151] 801Bc._subtilis TAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATCACCTCCTTTCT [1187] 802MY.CAP TAACAAGGTATCCGTACGGGAACGTGCGGATGGATCACCTCCTTTCT [1171] 803E._coli TAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTA-- [1183] 804MYX.XA TAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCTTTCT [1182] 805P.TEST TAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATCACCTCCTTTCT [1185] 806AG.TUM TAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCTTTCT [1164] 807DV.DES TAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCTTT-- [1184] 808BA.FRG TAACAAGGTAGCCGTACCGGAAGGTGCGGCTGGAACACCTCCTTTCT [1180] 809'Zea_mays_(chloroplast)' TAACAAGGTAGCCGTACTGGAAGGTGCGGCTGGATCACCTCCTTT-- [1160] 810T.AMIT TAACAAGGTAGCCGTAGGGGAACCTGTGGCTGGATTGAATCC----- [1170] 811; 812END; 813 814 815BEGIN CODONS; 816CODESET * UNTITLED = Universal: all ; 817END; 818 819BEGIN ASSUMPTIONS; 820 OPTIONS DEFTYPE=unord PolyTcount=MINSTEPS ; 821END; 822 823BEGIN TREES; 824 825 TRANSLATE 826 1 Homo_sapiens, 827 2 Rattus_norvegicus, 828 3 Xenopus_laevis, 829 4 A._salina, 830 5 S._cerevisiae, 831 6 P.MICA, 832 7 D.DISC, 833 8 T.BRUC, 834 9 E.GRAC, 835 10 Zea_mays, 836 11 D._mobilis, 837 12 S._solfataricus, 838 13 T._tenax, 839 14 M._vannielii, 840 15 MB._formicicum, 841 16 MS._hungatei, 842 17 H._volacanii, 843 18 HC._morrhuae, 844 19 H.HALO, 845 20 H._cutirubrum, 846 21 AN._nidulans, 847 22 HE.CHL, 848 23 Bc._subtilis, 849 24 MY.CAP, 850 25 E._coli, 851 26 MYX.XA, 852 27 P.TEST, 853 28 AG.TUM, 854 29 DV.DES, 855 30 BA.FRG, 856 31 'Zea_mays_(chloroplast)', 857 32 T.AMIT 858 ; 859 TREE mp_tree_1 = [&R] ((14,(15,(16,(18,(17,(19,20)))))),((13,(11,12)),(((8,9),(7,(5,(6,(10,(4,(3,(1,2)))))))),(30,(((21,31),(24,(22,23))),((25,27),(26,(29,(28,32))))))))); 860 TREE mp_tree_2 = [&R] ((14,(15,(16,(18,(17,(19,20)))))),((13,(11,12)),(((8,9),(7,(5,(6,(10,(4,(3,(1,2)))))))),(30,(((21,31),(24,(22,23))),((26,(25,27)),(29,(28,32)))))))); 861 TREE * UNTITLED = [&R] ((14,(15,(16,(18,(17,(19,20)))))),((13,(11,12)),(((8,9),(7,(5,(6,(10,(4,(3,(1,2)))))))),(30,(((21,31),(24,(22,23))),((25,27),(26,(29,(28,32))))))))); 862 863END; 864 865 866 867BEGIN MACCLADE; 868Version 3.05; 869LastModified -1425155107; 870Singles 1000&/0; 871END; 872