1#NEXUS
2
3
4BEGIN DATA;
5DIMENSIONS  NTAX=8 NCHAR=116;
6
7[!Data on cytochrome b from
8
9Thomas, R.H., W. Schaffner, A.C. Wilson, and S. P��bo.  1989.  DNA phylogeny of the extinct marsupial wolf.  Nature, 340: 465-467.
10
11See p. 22 of the MacClade book.]
12FORMAT DATATYPE=DNA  MISSING=? GAP=-  MATCHCHAR=. ;OPTIONS  MSTAXA=UNCERTAIN ;
13
14MATRIX
15[                       10        20        30        40        50        60        70        80        90        100       110    ]
16[                       .         .         .         .         .         .         .         .         .         .         .      ]
17
18Thylacinus     CTTTGGATCCTTACTAGGAATCTGCCTAGTCATTCAAATCTTAACAGGCTTATTTCTAGCAATACATTACACATCAGACACATCAACTGCCTTCTCCTCAGTAGCACATATCTGTC   [116]
19Sarcophilus    ...C..G..T...T.......A......A.T........TC.C..C..AC....C...........C.....C..T.......TC..C.....T.....C.....C..C..T....   [116]
20Dasyurus       .........YC..T.....G.A......A.T.........C.C......C....C...........C.....T.........CTT..C..T........C.....C..C..T..C.   [116]
21Echymipera     T.....C..A...............T.......C......C.C.....AC....C.....C...........G........CCT...A..T.....A..C..G..T..C..T..C.   [116]
22Trichosurus    ...C.....AC.......C......T..ACT..A......C.T...........CT.......G..C.....CG.T..T...G....A..T.....A........C..C.......   [116]
23Phalanger      .........AC..T....TT........ACA..C...............C.....T..........C.....TC.C...........A..T..T..A...A.C..C..C....C..   [116]
24Philander      T.....T..AC.T........A......A.T.........C.C......C.....T....T........T............CT...C..A..T..A........C........C.   [116]
25Bos            T..C..T...C.C..G............A..C.A......C.C......C....C...........C........C......A....A..A........T..TA.C........C.   [116]
26;
27END;
28
29
30BEGIN CODONS;
31CODONPOSSET * UNTITLED =
32		N: 1 116,
33		1: 2-113\3,
34		2: 3-114\3,
35		3: 4-115\3;
36CODESET * UNTITLED = mtDNA.mam: all ;
37END;
38
39BEGIN ASSUMPTIONS;
40	OPTIONS  DEFTYPE=unord PolyTcount=MINSTEPS ;
41END;
42
43BEGIN TREES;
44
45	TRANSLATE
46		1	Thylacinus,
47		2	Sarcophilus,
48		3	Dasyurus,
49		4	Echymipera,
50		5	Trichosurus,
51		6	Phalanger,
52		7	Philander,
53		8	Bos
54	;
55	TREE  * Fig._2_tree =  [&R] ((((1,(3,2)),((5,6),4)),7),8);
56
57END;
58
59
60
61BEGIN MACCLADE;
62Version 3.05;
63LastModified -1425155089;
64Singles 0000&/0;
65END;
66