1#NEXUS 2 3 4BEGIN DATA; 5DIMENSIONS NTAX=8 NCHAR=116; 6 7[!Data on cytochrome b from 8 9Thomas, R.H., W. Schaffner, A.C. Wilson, and S. P��bo. 1989. DNA phylogeny of the extinct marsupial wolf. Nature, 340: 465-467. 10 11See p. 22 of the MacClade book.] 12FORMAT DATATYPE=DNA MISSING=? GAP=- MATCHCHAR=. ;OPTIONS MSTAXA=UNCERTAIN ; 13 14MATRIX 15[ 10 20 30 40 50 60 70 80 90 100 110 ] 16[ . . . . . . . . . . . ] 17 18Thylacinus CTTTGGATCCTTACTAGGAATCTGCCTAGTCATTCAAATCTTAACAGGCTTATTTCTAGCAATACATTACACATCAGACACATCAACTGCCTTCTCCTCAGTAGCACATATCTGTC [116] 19Sarcophilus ...C..G..T...T.......A......A.T........TC.C..C..AC....C...........C.....C..T.......TC..C.....T.....C.....C..C..T.... [116] 20Dasyurus .........YC..T.....G.A......A.T.........C.C......C....C...........C.....T.........CTT..C..T........C.....C..C..T..C. [116] 21Echymipera T.....C..A...............T.......C......C.C.....AC....C.....C...........G........CCT...A..T.....A..C..G..T..C..T..C. [116] 22Trichosurus ...C.....AC.......C......T..ACT..A......C.T...........CT.......G..C.....CG.T..T...G....A..T.....A........C..C....... [116] 23Phalanger .........AC..T....TT........ACA..C...............C.....T..........C.....TC.C...........A..T..T..A...A.C..C..C....C.. [116] 24Philander T.....T..AC.T........A......A.T.........C.C......C.....T....T........T............CT...C..A..T..A........C........C. [116] 25Bos T..C..T...C.C..G............A..C.A......C.C......C....C...........C........C......A....A..A........T..TA.C........C. [116] 26; 27END; 28 29 30BEGIN CODONS; 31CODONPOSSET * UNTITLED = 32 N: 1 116, 33 1: 2-113\3, 34 2: 3-114\3, 35 3: 4-115\3; 36CODESET * UNTITLED = mtDNA.mam: all ; 37END; 38 39BEGIN ASSUMPTIONS; 40 OPTIONS DEFTYPE=unord PolyTcount=MINSTEPS ; 41END; 42 43BEGIN TREES; 44 45 TRANSLATE 46 1 Thylacinus, 47 2 Sarcophilus, 48 3 Dasyurus, 49 4 Echymipera, 50 5 Trichosurus, 51 6 Phalanger, 52 7 Philander, 53 8 Bos 54 ; 55 TREE * Fig._2_tree = [&R] ((((1,(3,2)),((5,6),4)),7),8); 56 57END; 58 59 60 61BEGIN MACCLADE; 62Version 3.05; 63LastModified -1425155089; 64Singles 0000&/0; 65END; 66