1********************************************************************************
2MAST - Motif Alignment and Search Tool
3********************************************************************************
4	MAST version 3.0 (Release date: 2002/04/02 00:11:59)
5
6	For further information on how to interpret these results or to get
7	a copy of the MAST software please access http://meme.sdsc.edu.
8********************************************************************************
9
10
11********************************************************************************
12REFERENCE
13********************************************************************************
14	If you use this program in your research, please cite:
15
16	Timothy L. Bailey and Michael Gribskov,
17	"Combining evidence using p-values: application to sequence homology
18	searches", Bioinformatics, 14(48-54), 1998.
19********************************************************************************
20
21
22********************************************************************************
23DATABASE AND MOTIFS
24********************************************************************************
25	DATABASE /home/sao/applications/mask_db/upstream.masked (nucleotide)
26	Last updated on Mon Jul 28 14:24:33 2003
27	Database contains 35386 sequences, 70745108 residues
28
29	Reverse complement strands are not scored.
30
31	MOTIFS acro1.set.fasta.conserved.25.meme (nucleotide)
32	MOTIF WIDTH BEST POSSIBLE MATCH
33	----- ----- -------------------
34	  2    21   ATGAAAAGCAGTGATTCACAG
35	  3    21   AGTGCCCTGGGCCTTTAAGAG
36	  4    23   AGGAGAGAGCTCACACCTCTCCC
37	  8    21   AACTTCAAAATGTCTCTTTGA
38
39	PAIRWISE MOTIF CORRELATIONS:
40	MOTIF     2     3     4
41	----- ----- ----- -----
42	   3   0.20
43	   4   0.32  0.17
44	   8   0.20  0.23  0.23
45	No overly similar pairs (correlation > 0.60) found.
46
47	Random model letter frequencies (from /home/sao/proj_motif/model.bckg):
48	A 0.264 C 0.241 G 0.237 T 0.258
49********************************************************************************
50
51
52********************************************************************************
53SECTION I: HIGH-SCORING SEQUENCES
54********************************************************************************
55SEQUENCE NAME                      DESCRIPTION                   E-VALUE  LENGTH
56-------------                      -----------                   -------- ------
57NM_148937                          ENSMUSG00000026173               1e-19   2000
58NM_080688                          ENSRNOG00000016361             9.5e-18   2000
59NM_032726                          ENSG00000115556                7.2e-17   2000
60NM_006422                          ENSG00000111254                1.5e-06   2000
61NM_011775                          ENSMUSG00000030911             7.7e-06   2000
62NM_013455                          ENSMUSG00000022622              0.0015   2000
63NM_009581                          ENSMUSG00000042554              0.0045   2000
64NM_022915                          ENSG00000135900                  0.034   2000
65NM_012490                          ENSRNOG00000013584               0.044   2000
66NM_146726                          ENSMUSG00000047041               0.075   2000
67NM_003460                          ENSG00000103310                   0.11   2000
68NM_029236                          ENSMUSG00000037525                0.14   2000
69NM_012069                          ENSG00000101892                    0.2   2000
70NM_007868                          ENSMUSG00000025065                 0.2   2000
71NM_006805                          ENSG00000177733                   0.21   2000
72NM_012038                          ENSMUSG00000019005                0.27   2000
73NM_176924                          ENSMUSG00000047730                0.27   2000
74NM_053967                          ENSRNOG00000007231                0.28   2000
75NM_022484                          ENSG00000146802                   0.31   2000
76NM_016106                          ENSG00000092108                    0.4   2000
77NM_016163                          ENSG00000092108                    0.4   2000
78NM_021475                          ENSMUSG00000022057                0.57   2000
79NM_013462                          ENSMUSG00000031489                0.74   2000
80NM_002227                          ENSG00000162434                   0.83   2000
81NM_000717                          ENSG00000167434                   0.97   2000
82NM_147080                          ENSMUSG00000044506                   1   2000
83NM_001097                          ENSG00000100312                    1.1   2000
84NM_023662                          ENSMUSG00000031592                 1.1   2000
85NM_026576                          ENSMUSG00000016984                 1.4   2000
86NM_021757                          ENSRNOG00000006655                 1.6   2000
87NM_019794                          ENSMUSG00000031701                 1.7   2000
88NM_019343                          ENSRNOG00000003618                 1.7   2000
89NM_144715                          ENSG00000163576                    1.9   2000
90NM_010510                          ENSMUSG00000048806                   2   2000
91NM_009241                          ENSMUSG00000029682                 2.1   2000
92NM_014783                          ENSG00000175306                    2.1   2000
93NM_006056                          ENSG00000171596                    2.5   2000
94NM_175619                          ENSG00000182223                    2.7   2000
95NM_000994                          ENSG00000144713                    2.7   2000
96NM_031922                          ENSG00000135597                    2.7   2000
97NM_007260                          ENSG00000011009                    2.8   2000
98NM_011839                          ENSMUSG00000046212                 2.9   2000
99NM_009531                          ENSMUSG00000030094                 3.5   2000
100NM_011717                          ENSMUSG00000024050                 3.5   2000
101NM_011291                          ENSMUSG00000025922                 3.5   2000
102NM_000324                          ENSG00000112077                    3.6   2000
103NM_026408                          ENSMUSG00000024534                 3.7   2000
104NM_026065                          ENSMUSG00000009550                 3.7   2000
105NM_010324                          ENSMUSG00000025190                 3.7   2000
106NM_028381                          ENSMUSG00000003208                 3.8   2000
107NM_033030                          ENSG00000152430                    3.8   2000
108NM_003215                          ENSG00000135605                    3.9   2000
109NM_172893                          ENSMUSG00000038507                   4   2000
110NM_133867                          ENSMUSG00000040600                 4.1   2000
111NM_027877                          ENSMUSG00000024906                 4.1   2000
112NM_011937                          ENSMUSG00000024437                 4.2   2000
113NM_024993                          ENSG00000176204                    4.2   2000
114NM_002578                          ENSG00000077264                    4.3   2000
115NM_021763                          ENSRNOG00000010533                 4.3   2000
116NM_016957                          ENSMUSG00000051601                 4.4   2000
117NM_172499                          ENSMUSG00000041945                 4.4   2000
118NM_021470                          ENSMUSG00000029130                 4.9   2000
119NM_177001                          ENSMUSG00000047433                 4.9   2000
120NM_021836                          ENSRNOG00000003678                 4.9   2000
121NM_011167                          ENSMUSG00000021345                 5.1   2000
122NM_020610                          ENSMUSG00000031019                 5.2   2000
123NM_026838                          ENSMUSG00000031253                 5.3   2000
124NM_153270                          ENSG00000185915                    5.3   2000
125NM_013255                          ENSG00000128585                    5.3   2000
126NM_031817                          ENSRNOG00000015326                 5.4   2000
127NM_172801                          ENSMUSG00000050201                 5.5   2000
128NM_033072                          ENSMUSG00000025409                 5.6   2000
129NM_177229                          ENSMUSG00000047113                 5.7   2000
130NM_026776                          ENSMUSG00000035120                 5.7   2000
131NM_027279                          ENSMUSG00000041396                 5.8   2000
132NM_052828                          ENSG00000137394                    6.1   2000
133NM_153189                          ENSG00000106304                    6.2   2000
134NM_003117                          ENSG00000106304                    6.2   2000
135NM_004490                          ENSG00000115290                    6.2   2000
136NM_153784                          ENSMUSG00000043782                 6.3   2000
137NM_011741                          ENSMUSG00000037327                 6.4   2000
138NM_002192                          ENSG00000122641                    6.6   2000
139NM_031249                          ENSMUSG00000050614                 6.6   2000
140NM_016704                          ENSMUSG00000022181                 6.6   2000
141NM_146140                          ENSMUSG00000044528                 6.7   2000
142NM_026856                          ENSMUSG00000049606                 6.8   2000
143NM_153572                          ENSMUSG00000041298                 6.9   2000
144NM_024251                          ENSMUSG00000030051                 7.6   2000
145NM_176831                          ENSMUSG00000009768                 7.6   2000
146NM_172599                          ENSMUSG00000037526                 7.9   2000
147NM_028539                          ENSMUSG00000048409                 8.1   2000
148NM_025781                          ENSMUSG00000031953                 8.3   2000
149NM_174924                          ENSG00000169340                    8.4   2000
150NM_007003                          ENSG00000101951                    8.4   2000
151NM_028604                          ENSMUSG00000019792                 8.5   2000
152NM_013166                          ENSRNOG00000012460                 8.5   2000
153NM_153399                          ENSMUSG00000040566                 8.5   2000
154NM_173084                          ENSG00000175447                    8.6   2000
155NM_009412                          ENSMUSG00000027506                 8.6   2000
156NM_005565                          ENSG00000043462                    9.3   2000
157NM_145514                          ENSMUSG00000038733                 9.4   2000
158NM_000319                          ENSG00000139197                    9.5   2000
159NM_139063                          ENSMUSG00000038982                 9.6   2000
160NM_009980                          ENSMUSG00000030970                 9.8   2000
161
162********************************************************************************
163
164
165
166********************************************************************************
167SECTION II: MOTIF DIAGRAMS
168********************************************************************************
169SEQUENCE NAME                      E-VALUE   MOTIF DIAGRAM
170-------------                      --------  -------------
171NM_148937                             1e-19  46_[2]_195_<3>_17_[4]_967_[4]_687
172NM_080688                           9.5e-18  681_[3]_998_[2]_195_[3]_17_[4]_23
173NM_032726                           7.2e-17  73_[4]_1628_[2]_163_[3]_15_[4]_33
174NM_006422                           1.5e-06  94_[4]_71_[4]_105_[8]_1062_[2]_
175                                             361_[8]_198
176NM_011775                           7.7e-06  624_[8]_512_[3]_141_[4]_86_[2]_
177                                             74_[2]_456
178NM_013455                            0.0015  993_[2]_532_[8]_433
179NM_009581                            0.0045  117_[4]_262_[2]_1577
180NM_022915                             0.034  1378_[4]_250_[8]_71_[2]_236
181NM_012490                             0.044  147_[2]_694_[3]_618_[2]_40_[8]_417
182NM_146726                             0.075  1067_[3]_139_[2]_267_[8]_98_[4]_
183                                             41_[2]_281
184NM_003460                              0.11  592_[3]_571_[8]_71_[4]_701
185NM_029236                              0.14  263_[8]_1004_[2]_661_[4]_7
186NM_012069                               0.2  141_[8]_153_[8]_732_[4]_243_[2]_
187                                             117_[2]_108_[2]_378
188NM_007868                               0.2  493_[4]_136_[8]_522_[8]_89_[3]_
189                                             4_[8]_362_[4]_39_[8]_45_[8]_138
190NM_006805                              0.21  281_[8]_1075_[2]_78_[3]_3_[8]_
191                                             431_[4]_25
192NM_012038                              0.27  740_[8]_146_[2]_221_[8]_418_[3]_
193                                             50_[8]_239_[8]_60
194NM_176924                              0.27  396_[3]_1539_[4]_21
195NM_053967                              0.28  148_[8]_19_[4]_799_[8]_969
196NM_022484                              0.31  111_[8]_178_[4]_108_[8]_1293_
197                                             [8]_224
198NM_016106                               0.4  673_[2]_899_[8]_47_[3]_275_[4]_20
199NM_016163                               0.4  673_[2]_899_[8]_47_[3]_275_[4]_20
200NM_021475                              0.57  634_[8]_527_[8]_364_[2]_102_[8]_289
201NM_013462                              0.74  333_[3]_255_[3]_593_[8]_146_[2]_589
202NM_002227                              0.83  582_[8]_356_[8]_911_[4]_86
203NM_000717                              0.97  167_[3]_131_[8]_772_[2]_251_[4]_593
204NM_147080                                 1  355_[2]_292_[3]_909_[3]_5_[8]_
205                                             243_[4]_89
206NM_001097                               1.1  1490_[8]_489
207NM_023662                               1.1  705_[8]_239_[3]_630_[8]_47_[8]_
208                                             124_[4]_148
209NM_026576                               1.4  435_[4]_299_[2]_565_[8]_367_[8]_248
210NM_021757                               1.6  436_[3]_117_[2]_304_[4]_1041_[8]_16
211NM_019794                               1.7  682_[8]_57_[3]_237_[8]_102_[4]_836
212NM_019343                               1.7  228_[8]_40_[3]_58_[2]_655_[8]_
213                                             70_[4]_241_[3]_580
214NM_144715                               1.9  5_[3]_464_[4]_57_[3]_606_[8]_782
215NM_010510                                 2  86_[3]_1326_[2]_153_[2]_277_[8]_74
216NM_009241                               2.1  208_[2]_1224_[3]_294_[4]_209
217NM_014783                               2.1  419_[3]_585_[8]_774_[2]_159
218NM_006056                               2.5  724_[2]_641_[8]_593
219NM_175619                               2.7  563_[2]_38_[4]_167_[8]_36_[8]_1110
220NM_000994                               2.7  327_[4]_87_[8]_302_[8]_944_[8]_254
221NM_031922                               2.7  396_[4]_58_[8]_92_[8]_253_[8]_
222                                             418_[2]_676
223NM_007260                               2.8  711_[8]_915_[2]_332
224NM_011839                               2.9  111_[8]_61_[8]_414_[8]_491_[4]_
225                                             211_[8]_213_[3]_64_[8]_286
226NM_009531                               3.5  90_[8]_729_[2]_1002_[3]_87_[2]_8
227NM_011717                               3.5  146_[8]_277_[8]_589_[4]_152_[2]_750
228NM_011291                               3.5  678_[3]_299_[2]_435_[8]_161_[4]_
229                                             317_[4]_1
230NM_000324                               3.6  1220_[8]_55_[3]_105_[2]_557
231NM_026408                               3.7  28_[2]_151_[4]_27_[4]_227_[4]_
232                                             311_[8]_220_[2]_904
233NM_026065                               3.7  107_[8]_176_[3]_286_[4]_735_[8]_610
234NM_010324                               3.7  605_[2]_42_[2]_1105_[3]_185
235NM_028381                               3.8  34_[8]_1159_[3]_6_[2]_433_[2]_284
236NM_033030                               3.8  189_[3]_218_[8]_1213_[8]_53_[2]_
237                                             3_[4]_170_[3]_26
238NM_003215                               3.9  97_[8]_88_[3]_758_[4]_369_[2]_602
239NM_172893                                 4  44_[3]_340_[2]_74_[3]_791_[3]_
240                                             133_[3]_130_[8]_362
241NM_133867                               4.1  769_[3]_282_[2]_761_[4]_123
242NM_027877                               4.1  114_[8]_370_[2]_57_[8]_1295_[4]_78
243NM_011937                               4.2  418_[4]_623_[4]_913
244NM_024993                               4.2  98_[3]_552_[8]_192_[3]_111_[4]_961
245NM_002578                               4.3  434_[2]_359_[2]_704_[3]_440
246NM_021763                               4.3  788_[2]_130_[2]_361_[2]_173_[4]_462
247NM_016957                               4.4  421_[8]_591_[3]_430_[8]_473_[8]_1
248NM_172499                               4.4  686_[3]_176_[3]_34_[8]_806_[4]_212
249NM_021470                               4.9  621_[4]_380_[8]_256_[2]_244_[4]_411
250NM_177001                               4.9  548_[2]_1093_[3]_317
251NM_021836                               4.9  1433_[4]_61_[8]_462
252NM_011167                               5.1  175_[2]_314_[3]_577_[4]_584_[3]_
253                                             160_[3]_83
254NM_020610                               5.2  1245_[4]_285_[2]_29_[3]_376
255NM_026838                               5.3  8_[2]_55_[3]_1012_[3]_538_[2]_
256                                             45_[2]_106_[8]_110
257NM_153270                               5.3  38_[8]_66_[4]_175_[3]_1026_[8]_609
258NM_013255                               5.3  141_[3]_111_[8]_1249_[4]_122_
259                                             [8]_81_[4]_187
260NM_031817                               5.4  72_[8]_1324_[8]_97_[2]_444
261NM_172801                               5.5  499_[3]_72_[2]_367_[8]_486_[2]_492
262NM_033072                               5.6  460_[2]_458_[3]_190_[8]_399_[3]_409
263NM_177229                               5.7  412_[2]_472_[8]_74_[4]_977
264NM_026776                               5.7  519_[4]_464_[2]_158_[3]_794
265NM_027279                               5.8  60_[2]_237_[8]_1023_[4]_615
266NM_052828                               6.1  814_[2]_215_[8]_137_[4]_737_[2]_11
267NM_153189                               6.2  352_[3]_1004_[8]_602
268NM_003117                               6.2  352_[3]_1004_[8]_602
269NM_004490                               6.2  677_[3]_153_[3]_257_[2]_576_[8]_253
270NM_153784                               6.3  120_[8]_1007_[2]_521_[8]_134_
271                                             [3]_134
272NM_011741                               6.4  1899_[2]_80
273NM_002192                               6.6  28_[4]_183_[3]_96_[8]_1046_[4]_
274                                             202_[8]_126_[8]_147_[2]_21
275NM_031249                               6.6  502_[8]_158_[4]_247_[2]_97_[3]_
276                                             473_[8]_72_[4]_321
277NM_016704                               6.6  587_[8]_93_[3]_219_[2]_432_[4]_583
278NM_146140                               6.7  443_[2]_103_[3]_254_[8]_99_[3]_
279                                             23_[8]_386_[4]_98_[4]_443
280NM_026856                               6.8  397_[3]_368_[8]_269_[2]_170_[4]_
281                                             199_[2]_457_[2]_12
282NM_153572                               6.9  97_[2]_458_[4]_196_[3]_861_[8]_
283                                             102_[4]_156_[8]
284NM_024251                               7.6  73_[2]_64_[4]_508_[8]_658_[4]_609
285NM_176831                               7.6  44_[8]_733_[3]_368_[2]_99_[8]_672
286NM_172599                               7.9  1166_[2]_279_[8]_391_[8]_101
287NM_028539                               8.1  226_[4]_1039_[2]_60_[8]_182_[8]_407
288NM_025781                               8.3  55_[2]_61_[8]_123_[8]_23_[4]_
289                                             823_[2]_624_[3]_163
290NM_174924                               8.4  779_[3]_64_[4]_957_[2]_135
291NM_007003                               8.4  311_[4]_68_[2]_1483_[4]_71
292NM_028604                               8.5  577_[8]_511_[3]_310_[4]_356_[4]_158
293NM_013166                               8.5  605_[8]_749_[2]_604
294NM_153399                               8.5  39_[2]_895_[4]_1022
295NM_173084                               8.6  201_[2]_643_[8]_634_[3]_459
296NM_009412                               8.6  125_[8]_526_[2]_87_[2]_483_[8]_
297                                             83_[4]_70_[8]_498
298NM_005565                               9.3  878_[8]_563_[2]_409_[8]_87
299NM_145514                               9.4  314_[3]_436_[8]_635_[8]_521_[8]_10
300NM_000319                               9.5  118_[2]_227_[3]_160_[8]_1250_
301                                             [4]_159
302NM_139063                               9.6  622_[4]_876_[4]_203_[2]_232
303NM_009980                               9.8  437_[3]_1109_[8]_62_[2]_308_[8]
304
305********************************************************************************
306
307
308
309********************************************************************************
310SECTION III: ANNOTATED SEQUENCES
311********************************************************************************
312
313
314NM_148937
315  ENSMUSG00000026173
316  LENGTH = 2000  COMBINED P-VALUE = 2.87e-24  E-VALUE =    1e-19
317  DIAGRAM: 46_[2]_195_[3]_17_[4]_967_[4]_687
318
319                                                   [2]
320                                                   2.9e-13
321                                                   ATGAAAAGCAGTGATTCACAG
322                                                   +++++++++++++++++++++
3231    GAATTGAGGGCAAAAACAGCGGTATTCCACACAGACTCTGAGCAGAATGAAAAGCAGTGATTCACAGCACACTGC
324
325                                          [3]
326                                          1.9e-13
327                                          AGTGCCCTGGGCCTTTAAGAG
328                                          +++++++++++++++++++++
329226  TTCTGCAACCCCACCCCCACAATTCCTCCTGTTGACCAGTGCCCTGGGCCTTTAAGAGTTGGATAGGCTGGACCT
330
331     [4]
332     2.6e-13
333     AGGAGAGAGCTCACACCTCTCCC
334     +++++++++++++++++++++++
335301  AGGAGAGCGCTCACACCTCTCCCCACCCCACTCCTCCTCTCTGGCTGTAACTCTGCCAGTTTACAGCAGCAAACT
336
337                    [4]
338                    3.6e-05
339                    AGGAGAGAGCTCACACCTCTCCC
340                    +++  +++ +++++ ++++++++
3411276 CACTTTATATGAAACAGGTTAGCCATAACCCTTCTCAGAAGTGAGAACATAGACAAAATAGCTCTCTTCCTTCCT
342
343
344NM_080688
345  ENSRNOG00000016361
346  LENGTH = 2000  COMBINED P-VALUE = 2.67e-22  E-VALUE =  9.5e-18
347  DIAGRAM: 681_[3]_998_[2]_195_[3]_17_[4]_23
348
349
350           [3]
351           9.1e-05
352           AGTGCCCTGGGCCTTTAAGAG
353           ++ + + +  +++++++++++
354676  TGTTACAAAGTTGTAATTCATTAAAAGATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
355
356                                                       [2]
357                                                       2.9e-13
358                                                       ATGAAAAGCAGTGATTCACAG
359                                                       +++++++++++++++++++++
3601651 AGATGAAATGAGGGCAAAAACAGTGGTATTCCACACAGACTCCGACCAGAATGAAAAGCAGTGATTCACAGAGCA
361
362                                              [3]
363                                              4.9e-12
364                                              AGTGCCCTGGGCCTTTAAGAG
365                                              +++++++++++++++++++++
3661876 CCTTTTCTGTCACTCCACCCCCACAACTCCTCCTGTTGACCAGTGCTCTGGGCCTTTAAGAGTTAGATAGGCTGG
367
368         [4]
369         7.7e-13
370         AGGAGAGAGCTCACACCTCTCCC
371         +++++++++++++++++++++++
3721951 ACCTAGGAAAGCGCTCACACCTCTCCCCACTCCACTCCTCTCTGGCTGTA
373
374
375NM_032726
376  ENSG00000115556
377  LENGTH = 2000  COMBINED P-VALUE = 2.04e-21  E-VALUE =  7.2e-17
378  DIAGRAM: 73_[4]_1628_[2]_163_[3]_15_[4]_33
379
380                                                                              [4
381                                                                              6.
382                                                                              AG
383                                                                              +
3841    GAAGAATACTGTTGTATTCATGGGAACATTGAAACAGAATATTTGAGATCTAGACTCTCCCAGAAAATCCACTAT
385
386     ]
387     7e-06
388     GAGAGAGCTCACACCTCTCCC
389     +++ ++ +++++ ++++++++
39076   GAGTGATAACACCCCTCACAGATTACCCAAGAGGGAAGGAGGTTGGGCAGCATTAAATTGATGCAAATAGTGACT
391
392                                                                               [
393                                                                               2
394                                                                               A
395                                                                               +
3961651 GTGGAAACAGACACTATGGAAAGGAGCCAGATTAAATAAGGGCAAAAACAGCCGTATTACATGCAGGAACCAGAA
397
398     2]
399     .9e-13
400     TGAAAAGCAGTGATTCACAG
401     ++++++++++++++++++++
4021726 TGAAAAGCAGTGATTCACAGAGCACTGCAACTGAGGACACTCCCTTCACTTTGAGAGCTACTGCGGGATTGGGGT
403
404                                      [3]                                 [4]
405                                      4.2e-11                             2.1e-1
406                                      AGTGCCCTGGGCCTTTAAGAG               AGGAGA
407                                      ++++ ++++++++++++++++                +++++
4081876 CCACCCCACCCCCACTACTCCCTCACATTGACCAGTGTCCTGGGCCTTTAAGAGTTGGATGGGCTGGACTGGAGA
409
410
411     2
412     GAGCTCACACCTCTCCC
413     +++++++++++++++++
4141951 GAGCTCACACCTCTCCCCTTCTTACTGCTTCCCTCCGGCTATAACTTGCC
415
416
417NM_006422
418  ENSG00000111254
419  LENGTH = 2000  COMBINED P-VALUE = 4.16e-11  E-VALUE =  1.5e-06
420  DIAGRAM: 94_[4]_71_[4]_105_[8]_1062_[2]_361_[8]_198
421
422
423                        [4]
424                        3.6e-05
425                        AGGAGAGAGCTCACACCTCTCCC
426                        ++ ++ +++++ +++++  ++++
42776   GATCAGCAGGACTGTCTCCAGCACGGAGCTGACACTGTTCAGCTGCCTCAACTGGTAGACGCTCCCAAGAAGTCA
428
429                                           [4]
430                                           1.0e-11
431                                           AGGAGAGAGCTCACACCTCTCCC
432                                           +++++++++++++++++++++++
433151  GAGGCAGCTGTCGGGGCGGAGGTGTCCATGACCTCCCCAGGACAGAGCAAAAACTTCTCCCTCAAGAACACAAAC
434
435                     [8]
436                     2.3e-09
437                     AACTTCAAAATGTCTCTTTGA
438                      ++++++ +++++++++++++
439301  CACTTATATTGTACAATACTTCAGACTGTTTTTTTTAAATACATAAAACTTTATGTTAAAAAACTCTATTAACAT
440
441                                                      [2]
442                                                      3.7e-05
443                                                      ATGAAAAGCAGTGATTCACAG
444                                                      + ++++ ++++ +++ ++ +
4451351 CCAGGAAAGACAAATATATAAGGAGTTGCCAGAGTTGAGGAGGTCCTCCAAGAGACCCAGAGATACAGAAAGAAA
446
447                                                             [8]
448                                                             4.9e-06
449                                                             AACTTCAAAATGTCTCTTT
450                                                             ++  + ++++++  ++ ++
4511726 TCAGGATGATTTTGATTGAATAATTCAAAAGTATCTTCTGATTTTCATGGTTATAAAAGGTTAAAATGAATTCTT
452
453
454
455     GA
456     ++
4571801 GATAAACTGTGGCTTATTTTAAGAGAATAGTTTAAATAAGGAAGCTGCAAATTGTGACACAGACAGGGGACAGGC
458
459
460NM_011775
461  ENSMUSG00000030911
462  LENGTH = 2000  COMBINED P-VALUE = 2.18e-10  E-VALUE =  7.7e-06
463  DIAGRAM: 624_[8]_512_[3]_141_[4]_86_[2]_74_[2]_456
464
465
466                             [8]
467                             3.2e-09
468                             AACTTCAAAATGTCTCTTTGA
469                             +++++ +++++++++++++++
470601  ATTTGAACCTCTTCCCAATTACAGAGATTAAAAATGTTTTTTGGAGGGGGGAGATCATATTTTCTAGTCAAAGGT
471
472                                     [3]
473                                     4.0e-05
474                                     AGTGCCCTGGGCCTTTAAGAG
475                                      +++++ +++ + +++++++
4761126 AAAAATACACATGTCAAGCTTTGGCATCGAGAGGTGCTGTGGACATTTAAGAAGTTATTAGGCCATGGAGGATGA
477
478                                                 [4]
479                                                 2.9e-05
480                                                 AGGAGAGAGCTCACACCTCTCCC
481                                                  +++++ + +++ ++  +++ ++
4821276 ATGATGGGACCATCCAGGCTTGGACTTGAGCATCAACAGGAAGGTGGAAAACAATCCCAAATCATCCCCAAAGCC
483
484        [2]
485        4.0e-05
486        ATGAAAAGCAGTGATTCACAG
487         +  +++ ++++++++++ ++
4881426 TGTGTCCAAGTAAGGGACTCAAACACAGAGGACTCTTAAGTGTACTGTCAGGTGGGCTGCAGCTAAACCCTATTG
489
490                            [2]
491                            7.5e-10
492                            ATGAAAAGCAGTGATTCACAG
493                            ++++++  +++++++++++++
4941501 AACATACATGACATGTGTCGGGTATAAGACTAAGGGATTCACAGAATCTCAGATAGGAGATTTACCTTCTCTTGT
495
496
497NM_013455
498  ENSMUSG00000022622
499  LENGTH = 2000  COMBINED P-VALUE = 4.27e-08  E-VALUE =   0.0015
500  DIAGRAM: 993_[2]_532_[8]_433
501
502
503                       [2]
504                       1.4e-05
505                       ATGAAAAGCAGTGATTCACAG
506                       + +++++ ++++ ++++ +++
507976  CGGGCCTTGATGTGGAAAAAAAAAAACAGTTATTCTCACATATGGAGAAAGGAAGTCTGCTTTCTGATGCTTAGG
508
509                                                   [8]
510                                                   1.7e-12
511                                                   AACTTCAAAATGTCTCTTTGA
512                                                   +++++++++++++++++++++
5131501 ACTCAGCAGTGGGCAAGAAGGTAGGCTTTGAAGTCATAAGTCAAGCAACTTCAAAATGGCTCTTTGAAAGTGTTC
514
515
516NM_009581
517  ENSMUSG00000042554
518  LENGTH = 2000  COMBINED P-VALUE = 1.26e-07  E-VALUE =   0.0045
519  DIAGRAM: 117_[4]_262_[2]_1577
520
521
522                                               [4]
523                                               2.6e-09
524                                               AGGAGAGAGCTCACACCTCTCCC
525                                               ++++++++ ++ ++++++++ ++
52676   CACACTTTCGTTCTGAATTTACGTTTATAGGGATGAAACTTCAGGAAAGAAAAGACACTTCATAGTGTAGAAACA
527
528                                [2]
529                                5.9e-09
530                                ATGAAAAGCAGTGATTCACAG
531                                + ++++++++++++++++ ++
532376  NNNNNNNNNNNNNTCCCAGAAAGCATAAAAGGAGCAAGTGATTCATAGACTGCTTGCTTTCTGCAGGTGCAAACA
533
534
535NM_022915
536  ENSG00000135900
537  LENGTH = 2000  COMBINED P-VALUE = 9.57e-07  E-VALUE =    0.034
538  DIAGRAM: 1378_[4]_250_[8]_71_[2]_236
539
540
541                                 [4]
542                                 5.2e-06
543                                 AGGAGAGAGCTCACACCTCTCCC
544                                 ++++++++ +++ ++ + ++  +
5451351 AAAAATTGTACTGTATTAACAGTTTGGTAGGAAAGCAATAGAATTACATTGTTAAAGAGTGTTAACATAAAGAAG
546
547      [8]
548      1.1e-08
549      AACTTCAAAATGTCTCTTTGA
550      +++++ ++++++++++ +++
5511651 TAAATTAAAAATGTTTTCTTTTTTTGAGGATTTAAATGTTTCCTTAACCTGAAAGCGAAACAGATTTTTGTTTGT
552
553                       [2]
554                       5.3e-06
555                       ATGAAAAGCAGTGATTCACAG
556                         +++++++++ ++ + ++++
5571726 TTTGCTGTAACGAGAGAGGAAGGAACAAGAGAGTGACAGGGTGAAGCAACTTCTCCCAGAAACTTTTGGGCGCAA
558
559
560NM_012490
561  ENSRNOG00000013584
562  LENGTH = 2000  COMBINED P-VALUE = 1.25e-06  E-VALUE =    0.044
563  DIAGRAM: 147_[2]_694_[3]_618_[2]_40_[8]_417
564
565
566                                                                             [2]
567                                                                             9.4
568                                                                             ATG
569                                                                              ++
57076   TTACTGGAGATATGCTTATAGCCCAAGAGGGAGGATGAGACCTTCTAGTCACTTACAGAGGAAAGACAAAACCTA
571
572
573     e-05
574     AAAAGCAGTGATTCACAG
575     ++++++++++ +++ ++
576151  GAAAGCAGTGCTTCTCAACCTTCCTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
577
578                                          [3]
579                                          4.2e-05
580                                          AGTGCCCTGGGCCTTTAAGAG
581                                          ++ +++ ++++++++ + + +
582826  AGAACGTGTGACAAGGTGCCACGCAGAAGAAAGAAATAAGACCTTGGGCCCTGATGTGGAAAAGAACAGTTCTCA
583
584      [2]                                                          [8]
585      6.0e-05                                                      7.2e-11
586      ATGAAAAGCAGTGATTCACAG                                        AACTTCAAAATGT
587        +++++ + +++++ + +++                                        +++++++++++++
5881501 TCAAGAAGTATGTGATACTCAGAAATGGGCAAGAAGGTAGGCTTTGAAATCATAAGTCAAGAAACTTCAAAATGG
589
590
591
592     CTCTTTGA
593     +++ ++++
5941576 CTCCTTGAAAGTGTTCTGGTAAACCCCCCCCCCCCCACGCCCCTGTACTGATGATCCCATCAGTCAGCAGAACCC
595
596
597NM_146726
598  ENSMUSG00000047041
599  LENGTH = 2000  COMBINED P-VALUE = 2.12e-06  E-VALUE =    0.075
600  DIAGRAM: 1067_[3]_139_[2]_267_[8]_98_[4]_41_[2]_281
601
602
603                      [3]
604                      5.6e-05
605                      AGTGCCCTGGGCCTTTAAGAG
606                      + +   ++++++ +++++++
6071051 AGTTGTCAACAATTACTATTTAGATGGGCTCTTAAAATAATCTTTTATGGAACTCATGAGTTGGTGCCAAACAAC
608
609                                [2]
610                                8.0e-05
611                                ATGAAAAGCAGTGATTCACAG
612                                + ++++++++ +  +  ++++
6131201 TGGGACTAGTGAGATCATGGACCTTAGAAAAGAAGCAATTTCCGACACTTTGCTAGGCCAGCATTAATTCCTTAC
614
615                    [8]
616                    5.0e-05
617                    AACTTCAAAATGTCTCTTTGA
618                     + ++++++++ + +++ ++
6191501 AGGCTTTTGTAATCATGTTTCAAAATTTATTTCTTTAATGGTTATTCAAATTTTTGAACAATGGGCTTAGGTAGA
620
621                                                                [4]
622                                                                2.3e-07
623                                                                AGGAGAGAGCTCACAC
624                                                                 ++++++++++  ++
6251576 AGCATAGGGACTGAGCAGCTGCTTAATTAGAGAATAGCAGTGACTTGAACTCTCAGAAATGGACAGAGAAGCAAG
626
627                                                     [2]
628                                                     1.4e-07
629     CTCTCCC                                         ATGAAAAGCAGTGATTCACAG
630     + +++++                                         + +++++++ +++++ ++ ++
6311651 CACACACACAATATAAAACTGAACAGAATGGTAAGTGGCAGAACAGAGAGAAAAAGAGGTGATACATAGAAAGAC
632
633
634NM_003460
635  ENSG00000103310
636  LENGTH = 2000  COMBINED P-VALUE = 3.14e-06  E-VALUE =     0.11
637  DIAGRAM: 592_[3]_571_[8]_71_[4]_701
638
639
640                                                                        [3]
641                                                                        1.5e-09
642                                                                        AGTGCCCT
643                                                                        ++++++ +
644526  TTAGTTATGATATACAATGCAACTTGATAAAGTCACACAGAATTTTGAATCTAAAACTATTTAGCAGAATGCCTT
645
646
647
648     GGGCCTTTAAGAG
649     ++ ++++++++++
650601  GGATCCTTAAAAGAAGGTCCAAAGAAGGCTTTTGATGAGACAATTTGAGCTTTTGACCCTATTACTCTAGAAATG
651
652                                                                [8]
653                                                                7.4e-06
654                                                                AACTTCAAAATGTCTC
655                                                                +++++  ++++ ++++
6561126 AGCTGACATTTAAATCCAGCCACTAGAAGCTTTCATCACTTATTCTTCCTGCCATACGTAGATTTGAAATATTTC
657
658
659
660     TTTGA
661      +++
6621201 CTTGCAAAAATTTTAGACTCAAGTTTTCTAGAATACAAGTGAATTTCCATATATCTTGAAGGTCTCTAAGAGCTG
663
664      [4]
665      6.3e-05
666      AGGAGAGAGCTCACACCTCTCCC
667      ++ + + ++++ +++++  +++
6681276 CAGTATAAAGCAGACACTAGTCATGTTGATGACATAATTACTTAGAATAAGACTGGCTACCCTCAGGACGAAGGC
669
670
671NM_029236
672  ENSMUSG00000037525
673  LENGTH = 2000  COMBINED P-VALUE = 3.92e-06  E-VALUE =     0.14
674  DIAGRAM: 263_[8]_1004_[2]_661_[4]_7
675
676
677                                           [8]
678                                           7.8e-06
679                                           AACTTCAAAATGTCTCTTTGA
680                                            ++++ +++++++++  +++
681226  TCTTTTCCCATCCTTCCATTCCCACTGTCTCCTAACCCTGATTTAAAATGTTTGGTGGCCCTCAAACTGAACATG
682
683                  [2]
684                  1.0e-05
685                  ATGAAAAGCAGTGATTCACAG
686                  + ++ +++++ ++ + ++ ++
6871276 AAATATATAAACTAAGACAGCCAAGGCTACATAGATACCTTGTCTTAAAAGACAAACAAATAAACAAAAAGTCCC
688
689                         [4]
690                         6.6e-09
691                         AGGAGAGAGCTCACACCTCTCCC
692                         ++++++++ ++ ++++  +++++
6931951 AGAAACCAGATCAGATTTTAAGGAGAGCAAAGAAACGACACAGCCTTTTT
694
695
696NM_012069
697  ENSG00000101892
698  LENGTH = 2000  COMBINED P-VALUE = 5.75e-06  E-VALUE =      0.2
699  DIAGRAM: 141_[8]_153_[8]_732_[4]_243_[2]_117_[2]_108_[2]_378
700
701
702                                                                       [8]
703                                                                       3.3e-06
704                                                                       AACTTCAAA
705                                                                       + +++++++
70676   ACCTGTGCCCAAGAAATGAGCATGTAGTTTTCTAGACTTTAATAATGTGCCCCCGAATCTGCTGTTATATTCAAA
707
708
709
710     ATGTCTCTTTGA
711      + ++++ +++
712151  GTCTCTCCTTTCTCCCTCCCCTTGTCCCTTTGTAGCCACTGCTTCATTTGCATCCGCATTAGCCACTTGTGGCTC
713
714                    [8]
715                    7.5e-07
716                    AACTTCAAAATGTCTCTTTGA
717                    ++++++++++ + +++ +++
718301  TAGTGTTTTGAGTGTAAATTCATACAGATTTCTGTCTTCAACATCCTATGGGATTTGGTTATTTTACCCCACCCA
719
720                       [4]
721                       7.1e-07
722                       AGGAGAGAGCTCACACCTCTCCC
723                       +++++ ++ ++++++++ ++ ++
7241051 ATGGGGTTTGATTTGTGAAGGAAGGATCACAAACTCCATCCAGGCCTTTTAGCCACCCAGGCTCCAGTAGGGTGG
725
726                                                                [2]
727                                                                3.7e-06
728                                                                ATGAAAAGCAGTGATT
729                                                                +++++ ++++++++++
7301276 GGATAAATATAGATCTCAACCACTACAGAAATTTGGCCAGGATTTGGAGGGGTGTGTGTATGAGGGGCAGTGACT
731
732
733
734     CACAG
735      +  +
7361351 GATGGGGCCACTCTGACATGTGGGCTAGAAAAAGGCTTCCTTATGTCCAAGACCCTCTTTGGGGCAGGGAGGAAT
737
738                                                    [2]
739                                                    7.7e-06
740                                                    ATGAAAAGCAGTGATTCACAG
741                                                    + +++   ++ +++++ ++++
7421426 GAAGTAGGAGCCTGGCTTCTAAAATCAGAAAGAATAATCCACATTTTAAGAAGCTCATGGATTGACACAAATAAG
743
744                               [2]
745                               3.7e-05
746                               ATGAAAAGCAGTGATTCACAG
747                               + ++++++++++ ++++   +
7481576 TCCTTTTGCATGAGATCAGCCTTATGAAAAAAGCAAGTTATTCTTGGCCATCTCCCCTCACCCCCAACTCCCACC
749
750
751NM_007868
752  ENSMUSG00000025065
753  LENGTH = 2000  COMBINED P-VALUE = 5.78e-06  E-VALUE =      0.2
754  DIAGRAM: 493_[4]_136_[8]_522_[8]_89_[3]_4_[8]_362_[4]_39_[8]_45_[8]_138
755
756
757                                                [4]
758                                                2.2e-05
759                                                AGGAGAGAGCTCACACCTCTCCC
760                                                 +++++ +  +  +++++++ +
761451  TTCTACCTTGCACACAAACTTCTGCATTTAAAGTGACTGTGGCTGGAAACATGAGCCACTTCTTCAAGATTACTA
762
763                                                         [8]
764                                                         1.0e-07
765                                                         AACTTCAAAATGTCTCTTTGA
766                                                         +++++++ ++++  +++++ +
767601  AGGGGAGGGAAGGAATTTTTTTTCAGTCACACAGATCAATTCAATTTGTCGGAGCTTCAGAATGAATTTTTAAAT
768
769                                                                           [8]
770                                                                           5.5e-
771                                                                           AACTT
772                                                                           +++
7731126 CTATGCAACAGGATCAGTGCTGTAGTCCCCGGTTCAAGCTGAAAATGTTGCACAGGAAGACATATCATGTAAAGG
774
775
776     05
777     CAAAATGTCTCTTTGA
778      ++ +++ ++++++++
7791201 TATTATGATTTTTTTATCTGTGTCTATACAAACAGAACTTAATGTCATAACTCTTGTCATAACCCTTACCAAGGT
780
781                                   [3]                      [8]
782                                   1.1e-06                  6.3e-05
783                                   AGTGCCCTGGGCCTTTAAGAG    AACTTCAAAATGTCTCTTTG
784                                   ++++  +++++  ++++++ +     ++++  ++++  ++ ++++
7851276 CCTATGGACTCTTTACCTGTCAAGTCTGAAAATATGATGGTATTTTAAATGGGAATGCTTAGTAATCATTGTTTG
786
787
788
789     A
790     +
7911351 ATGTTGATGTATCTATGATGCCATAGTACCAAGGTGAACTGCTGTCCGTTTTCAAGAAGATGCTCTTGTCTCATT
792
793                                                                    [4]
794                                                                    1.9e-05
795                                                                    AGGAGAGAGCTC
796                                                                    ++++++ + +++
7971651 AAATTATAAAATGTGCTATCTGTATATTAATTCTATTATATAATTATAATAACTTGGCAAGGCAGGACACCAAAA
798
799                                                       [8]
800                                                       5.6e-05
801     ACACCTCTCCC                                       AACTTCAAAATGTCTCTTTGA
802     +++ +  ++++                                        ++ + +++++ ++++++++
8031726 ACATTATTCAGGACATATTTTCTTGTTAGTTGCCAAGATAGAATTTCTTTGAACTAATAATTTTTTTTTTTTTTT
804
805                                              [8]
806                                              3.9e-05
807                                              AACTTCAAAATGTCTCTTTGA
808                                               +++++  +++++ ++++ +
8091801 AGTTCTTCAAATTCACATTCCCAGCAAGTCTCTTTGTTTGGTAATTCTGAATGTGTTTTATTGCTTTCTGGTAGG
810
811
812NM_006805
813  ENSG00000177733
814  LENGTH = 2000  COMBINED P-VALUE = 5.92e-06  E-VALUE =     0.21
815  DIAGRAM: 281_[8]_1075_[2]_78_[3]_3_[8]_431_[4]_25
816
817
818                                                             [8]
819                                                             2.5e-05
820                                                             AACTTCAAAATGTCTCTTT
821                                                             ++++++ ++ + +  ++++
822226  TAAAAAATGGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCAATCTTTCAGAAAGCTTCTTAGTATAGCTTT
823
824
825
826     GA
827     ++
828301  GAGCCTTCAACGTCAACATGTAAGTCAAATATTTAAGTTAAATATTAACATCAAGTTAAGCATACTAGATTAAAA
829
830                                [2]
831                                6.2e-05
832                                ATGAAAAGCAGTGATTCACAG
833                                  +++++ ++ + +++ ++++
8341351 GACCTCTTAAGTTTCTCTAAGTACACATCAAGAATAAAGAATTAACACGTAAAGTCTTAAACAAATATCCCTTAA
835
836                                                        [3]
837                                                        2.0e-06
838                                                        AGTGCCCTGGGCCTTTAAGAG
839                                                        ++ ++ +++ ++ +++++++
8401426 AAAACGGTACGGAATGGATCCTAGAAAAAAAATGTTAGACATGTACGGTCAAACACAATGATTTATTAAAAATAA
841
842     [8]
843     1.6e-07
844     AACTTCAAAATGTCTCTTTGA
845     +++ + ++++++ ++++++++
8461501 AACGTAAAAATGATTTTTGTACATATGCTTCCAAATTTCAGGCATGGGATCCAAGTAGATTTCATAGAAAACGCT
847
848       [4]
849       1.5e-05
850       AGGAGAGAGCTCACACCTCTCCC
851        +++++++++++ + ++  + ++
8521951 GTTGGAAAGAGCTACCCCTATAGCCACTCCCAGGCATTTTAAATTTTCTT
853
854
855NM_012038
856  ENSMUSG00000019005
857  LENGTH = 2000  COMBINED P-VALUE = 7.63e-06  E-VALUE =     0.27
858  DIAGRAM: 740_[8]_146_[2]_221_[8]_418_[3]_50_[8]_239_[8]_60
859
860
861                                                                      [8]
862                                                                      3.4e-06
863                                                                      AACTTCAAAA
864                                                                      +++  +++++
865676  GAGGACACACATGGCTTTTCTTCAGTGCTGAGCGGGACAGTCTACACTAATAAAAAAGAGGACTAAAAAGCAAAC
866
867
868
869     TGTCTCTTTGA
870     +++ ++++++
871751  TGGATTTTTGTTCACACAGCATCTACATCTTCTAAAAAGAACGAGTGGCATGGAGGAGCCGAGCAGTGGTGGCAC
872
873            [2]
874            1.0e-07
875            ATGAAAAGCAGTGATTCACAG
876            + ++ ++++++++++ +++++
877901  GGGTTCCAGGATAGCCAGGGATACACAGAAAATCCTGTCTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
878
879                             [8]
880                             6.7e-05
881                             AACTTCAAAATGTCTCTTTGA
882                              + ++  + ++++++++++++
8831126 CTATTCCCTGCTCTTATCTTGCTGTGTTTTCTTCTGTTTCTTGGAGTTTGACATTCATGAGTGTGTCGTCTGTCT
884
885                  [3]
886                  1.0e-05
887                  AGTGCCCTGGGCCTTTAAGAG
888                  ++++++ +++ +++   ++++
8891576 GCACTCCATTAAAAGTGCTTTGGATCAAGGAAAGAATGCTGCAGTGTTTGATAAAAGGAAGCATGGGCTCTACAC
890
891              [8]
892              1.3e-05
893              AACTTCAAAATGTCTCTTTGA
894               ++++ +++  + ++++ ++
8951651 AAGTTAGTTTAATTAAAAGGGATTTTGTGTTTTTGTTTTGTGGTCACAGCGCCTGCCCCTGAGAGGCTTAATAGC
896
897                                                 [8]
898                                                 6.1e-05
899                                                 AACTTCAAAATGTCTCTTTGA
900                                                  ++++  ++ +   +++++++
9011876 GTCAGTTTTATTCCATCCTGAAAAATAAAAAGTAGCATGCCTTTTACTTTGAATTTAATCTTGGATGACCCCACT
902
903
904NM_176924
905  ENSMUSG00000047730
906  LENGTH = 2000  COMBINED P-VALUE = 7.76e-06  E-VALUE =     0.27
907  DIAGRAM: 396_[3]_1539_[4]_21
908
909
910                          [3]
911                          1.2e-05
912                          AGTGCCCTGGGCCTTTAAGAG
913                          ++++ +++++ + +++ +++
914376  GAAATTTTATATTTAATTTTTAATAGCATGGATTTTTTAAAAATGTCTGTTGCAACTAGTTCAGAGACTTCAAGC
915
916           [4]
917           2.0e-09
918           AGGAGAGAGCTCACACCTCTCCC
919           ++++++++ +++++++   ++ +
9201951 GTCTGAAGGAGAGATCACACACGAGTCTGACCACTGTCACCTCTCTGCAG
921
922
923NM_053967
924  ENSRNOG00000007231
925  LENGTH = 2000  COMBINED P-VALUE = 7.90e-06  E-VALUE =     0.28
926  DIAGRAM: 148_[8]_19_[4]_799_[8]_969
927
928
929                                                                              [8
930                                                                              2.
931                                                                              AA
932                                                                              ++
93376   NNNGTTCTTTTTACATAGTGTATTCTGCTGTCACTTCCCCCTCCAACTCCTCCCAGATCTTTCTCACATACCTAA
934
935     ]                                     [4]
936     7e-10                                 5.6e-05
937     CTTCAAAATGTCTCTTTGA                   AGGAGAGAGCTCACACCTCTCCC
938     ++++++++++++++++++                    ++ ++++ ++++++ +++++ ++
939151  CTTCATACTGTCTCTTTTTCTTCCTCTCTTTAAAAAACAGAAGAGTGAAAAACCTTCAAACTNNNNNNNNNNNNN
940
941                                        [8]
942                                        5.3e-05
943                                        AACTTCAAAATGTCTCTTTGA
944                                        +++   ++++++ +++ +++
945976  TATAGAAGATGGTAGGGGCAAGGGACACTCTTACTAACAATATAATGATTTATTGTTTTATTAGATTTATTATTG
946
947
948NM_022484
949  ENSG00000146802
950  LENGTH = 2000  COMBINED P-VALUE = 8.65e-06  E-VALUE =     0.31
951  DIAGRAM: 111_[8]_178_[4]_108_[8]_1293_[8]_224
952
953
954                                         [8]
955                                         1.4e-05
956                                         AACTTCAAAATGTCTCTTTGA
957                                          ++++ + +++ +  +++++
95876   AATCTACCCACTAATGCATTAAATATAAGTGCATTTTAATTAAGACTTTAATTTTTTTAAAGCATAACTGGTCAT
959
960               [4]
961               1.7e-05
962               AGGAGAGAGCTCACACCTCTCCC
963                ++ ++++++++ +++++  + +
964301  TGAAAAGTCATGGGGAGAGAAAGAACTTGGCTCCTTATTTATTTTGCAACAGTGTGTATGCTATTNNNNNNNNNN
965
966                                                                       [8]
967                                                                       6.6e-10
968                                                                       AACTTCAAA
969                                                                       +++++++++
970376  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAAATAAATAAATAATGGTTAAAAAAAGAAAATAAATTCATA
971
972
973
974     ATGTCTCTTTGA
975     ++++++++++++
976451  CTGTTTTTTTTATTCTATTGAAAAAAAAGATGATGTTTTTAGAGCTAGTGGTTTTGTGGTTTTAGCAAGGTATCA
977
978                                   [8]
979                                   5.0e-05
980                                   AACTTCAAAATGTCTCTTTGA
981                                    ++++ + + +  +++++++
9821726 CAAATAGCTGAGAAATTTAAAAGGAGATTTTACTTAACATTAACTTTTTTTAAGCTAAAAGCTCATAATTTTAAC
983
984
985NM_016106
986  ENSG00000092108
987  LENGTH = 2000  COMBINED P-VALUE = 1.12e-05  E-VALUE =      0.4
988  DIAGRAM: 673_[2]_899_[8]_47_[3]_275_[4]_20
989
990
991                                                                              [2
992                                                                              7.
993                                                                              AT
994                                                                              +
995601  NNNNNNNNNNNNNNAGAGATTATGTAATAAGATAACCTGTTTTAAATGTCACAAAAATAAATTTTTATTAATGAA
996
997     ]
998     3e-08
999     GAAAAGCAGTGATTCACAG
1000     +++++++++++ +++++++
1001676  AAAAGCCAGTGTTTCACACTATAAAACAATATATAATCGTTAGGCTAACCATTTCATTTATATAATTGTGAAAGT
1002
1003                       [8]
1004                       3.2e-05
1005                       AACTTCAAAATGTCTCTTTGA
1006                       +++ + ++++++++ + +++
10071576 CACTGAGAAACGAGAGCTAACGTTAAAATGTTGCCTGTGTTTCAGGAGCTTCATTTACTTCAGTCCTGTGGTCCT
1008
1009                [3]
1010                1.9e-05
1011                AGTGCCCTGGGCCTTTAAGAG
1012                ++ + +++   ++++++++ +
10131651 TATACTCCTAGAGCATTATCACCCTTTAAGTGCTCTGTAAGTCACCAAACCAACAGTTCAGTAATTAGGTTCTTA
1014
1015            [4]
1016            1.4e-05
1017            AGGAGAGAGCTCACACCTCTCCC
1018             ++ +++ +++  +++ +++ ++
10191951 TCCGGGGCGGTAAGGGCAGCCACGTCATCCCCCCGCTCCGCTCCCCAGCC
1020
1021
1022NM_016163
1023  ENSG00000092108
1024  LENGTH = 2000  COMBINED P-VALUE = 1.12e-05  E-VALUE =      0.4
1025  DIAGRAM: 673_[2]_899_[8]_47_[3]_275_[4]_20
1026
1027
1028                                                                              [2
1029                                                                              7.
1030                                                                              AT
1031                                                                              +
1032601  NNNNNNNNNNNNNNAGAGATTATGTAATAAGATAACCTGTTTTAAATGTCACAAAAATAAATTTTTATTAATGAA
1033
1034     ]
1035     3e-08
1036     GAAAAGCAGTGATTCACAG
1037     +++++++++++ +++++++
1038676  AAAAGCCAGTGTTTCACACTATAAAACAATATATAATCGTTAGGCTAACCATTTCATTTATATAATTGTGAAAGT
1039
1040                       [8]
1041                       3.2e-05
1042                       AACTTCAAAATGTCTCTTTGA
1043                       +++ + ++++++++ + +++
10441576 CACTGAGAAACGAGAGCTAACGTTAAAATGTTGCCTGTGTTTCAGGAGCTTCATTTACTTCAGTCCTGTGGTCCT
1045
1046                [3]
1047                1.9e-05
1048                AGTGCCCTGGGCCTTTAAGAG
1049                ++ + +++   ++++++++ +
10501651 TATACTCCTAGAGCATTATCACCCTTTAAGTGCTCTGTAAGTCACCAAACCAACAGTTCAGTAATTAGGTTCTTA
1051
1052            [4]
1053            1.4e-05
1054            AGGAGAGAGCTCACACCTCTCCC
1055             ++ +++ +++  +++ +++ ++
10561951 TCCGGGGCGGTAAGGGCAGCCACGTCATCCCCCCGCTCCGCTCCCCAGCC
1057
1058
1059NM_021475
1060  ENSMUSG00000022057
1061  LENGTH = 2000  COMBINED P-VALUE = 1.62e-05  E-VALUE =     0.57
1062  DIAGRAM: 634_[8]_527_[8]_364_[2]_102_[8]_289
1063
1064
1065                                       [8]
1066                                       3.1e-08
1067                                       AACTTCAAAATGTCTCTTTGA
1068                                       +++++ +++ +++ ++ +++
1069601  TCAGTGTGTGTGTGTAATCTATCCAATAATTCATAAATTAATAGTGGATTCTTGCCTTTCCGGTTATGCACATCC
1070
1071                                                              [8]
1072                                                              1.9e-05
1073                                                              AACTTCAAAATGTCTCTT
1074                                                               +++  + +++++++++
10751126 ACTGATAGATCAAGAACGAATTGAGGAACAAGACCTTAGTATCAGACCCACCCTCTGTACTCAACAATGGCTCTC
1076
1077
1078
1079     TGA
1080     +++
10811201 TGAACTATTTTATGACTCTAGTAATAACTACCTACCCTAAATAATTTCATAGAAGACATCACATTGTTGATTTGG
1082
1083                                                                        [2]
1084                                                                        2.0e-06
1085                                                                        ATGAAAAG
1086                                                                        +++++++
10871501 GGACTCAACAGATTATATATAGTAATGTATAAGCATAAAAATGTACATATGTGCGCAATAATAATTGATAAAAGA
1088
1089
1090
1091     CAGTGATTCACAG
1092     ++ +++  +++++
10931576 AAAGGAGACACAGTTTTGAAGAAGAGTGGGGAAGGATATATAGGAAAGTTTGAAGGGAGAGAAGGGAAGGTAGAG
1094
1095                                             [8]
1096                                             3.1e-05
1097                                             AACTTCAAAATGTCTCTTTGA
1098                                             +++ +++++ ++   +++++
10991651 ATATTGTAATTAAAATATAATTTCAAAAATAAGCAACAACAACATCAAAGTGAGCCTTGTCATGATAAAATCTAT
1100
1101
1102NM_013462
1103  ENSMUSG00000031489
1104  LENGTH = 2000  COMBINED P-VALUE = 2.08e-05  E-VALUE =     0.74
1105  DIAGRAM: 333_[3]_255_[3]_593_[8]_146_[2]_589
1106
1107
1108                                      [3]
1109                                      8.3e-05
1110                                      AGTGCCCTGGGCCTTTAAGAG
1111                                      ++++++++++++ +++  +
1112301  TCTTTGCTCTTGGAGTTAAAAAAGAGCCAGTGCAATACTCTGGTCACTTCCATAGAACCTCCCCACACCCCACCC
1113
1114              [3]
1115              5.6e-07
1116              AGTGCCCTGGGCCTTTAAGAG
1117              +++++++++  ++++++ +
1118601  TCTCAAACCAGTGCCCTGAACCTTTAGATACACAGGCACACAAAACTGAAGCAAAGTGTTTGCTGATGTCAATGA
1119
1120                            [8]
1121                            1.4e-06
1122                            AACTTCAAAATGTCTCTTTGA
1123                            +++ +++++++ ++++++++
11241201 CCATAGTGAGGAGACAGGGATGAAACCTCAAACTTTTTTTTTTTCCTGGATTCCTGCTCTCAAACTAACCAGAGA
1125
1126                                             [2]
1127                                             2.7e-05
1128                                             ATGAAAAGCAGTGATTCACAG
1129                                             +  + +++++++++++  +++
11301351 GGAGGGAGGGGTGCTCTCTTTTCCCTAAGCATACAGCACAAACATAGGCAGGGACTGGCAGGCCTCCAAGGCCAT
1131
1132
1133NM_002227
1134  ENSG00000162434
1135  LENGTH = 2000  COMBINED P-VALUE = 2.34e-05  E-VALUE =     0.83
1136  DIAGRAM: 582_[8]_356_[8]_911_[4]_86
1137
1138
1139                                                              [8]
1140                                                              7.0e-05
1141                                                              AACTTCAAAATGTCTCTT
1142                                                              +++   ++++++++ +++
1143526  AGTGGTGTTTGTTTGTTTGTTAGTAGTAAGGACCGTAACCCACCCCTTCCTCCCCCCAAAACTATACTGTTATTT
1144
1145
1146
1147     TGA
1148     ++
1149601  TTCTATGTAAGCAAATTGTTTGAAATGCTTTGAAAATGAAATCTTAATATTAAAAGGCATATGCATGTAAAGTCT
1150
1151                                                                [8]
1152                                                                1.5e-05
1153                                                                AACTTCAAAATGTCTC
1154                                                                ++++  +++++++++
1155901  TAATCGTTCACATTGAATCAATGACTAAACATTTTTGATTACCCAGCTACCTCCAAGCAAACTGAAAACTGTCTA
1156
1157
1158
1159     TTTGA
1160      ++++
1161976  GTGGATCCTGAAGTCCATAGTGCCTCTAGCCGGGTCTTTCAAGTGTTGCACCACAGGGTGATGATTGATGGTAAA
1162
1163                     [4]
1164                     2.3e-09
1165                     AGGAGAGAGCTCACACCTCTCCC
1166                      +++++++ +++++++++++  +
11671876 GAGTTCAGTGACTTTTTGGACAGAACACAAACTTCTTTCATTAGAAATTTTTAAAAAATGACTTGGGCATTTGTT
1168
1169
1170NM_000717
1171  ENSG00000167434
1172  LENGTH = 2000  COMBINED P-VALUE = 2.75e-05  E-VALUE =     0.97
1173  DIAGRAM: 167_[3]_131_[8]_772_[2]_251_[4]_593
1174
1175
1176                      [3]
1177                      1.1e-05
1178                      AGTGCCCTGGGCCTTTAAGAG
1179                      + ++  +++  +++ ++++++
1180151  GCTCTGTGGTGCCCATAATTAAGATGCACCCATAAGAGAGTGTATAGCTTTACCCCTCCCGCATTCCTCAGAGGG
1181
1182                        [8]
1183                        1.0e-07
1184                        AACTTCAAAATGTCTCTTTGA
1185                        +++++ +++ +++ ++ ++++
1186301  GGGGGGCCTGAATGCAATGAACTTTAAAGTGGATCATTGATCAACAGTCCCTTAACCCCACCAAAGTTTCCCAAG
1187
1188                                                                   [2]
1189                                                                   8.0e-05
1190                                                                   ATGAAAAGCAGTG
1191                                                                     +++++++++++
11921051 CCAAATGTTGGAGCCGCCCTTAAGGGAACTTCCCCTGGACTCCTCTGGAGGTCTTGCCAGATGGGAGAACCAGGG
1193
1194
1195
1196     ATTCACAG
1197      + ++  +
11981126 GTCCATTCAGACCCCAGTCTCTTCTCTTCCCATCTCATCTCTCCACCTGGGGGGCTCAAAGAACCTAGCTCCTCC
1199
1200                                       [4]
1201                                       2.2e-05
1202                                       AGGAGAGAGCTCACACCTCTCCC
1203                                       ++++++ ++++ + +    ++++
12041351 GTCTGCTTAGAAATTAAGTTTGGAGCAGCCTGGGAGGAAATAGAAGAGATGAGACCCAGAGAATCAATGGCCACT
1205
1206
1207NM_147080
1208  ENSMUSG00000044506
1209  LENGTH = 2000  COMBINED P-VALUE = 2.87e-05  E-VALUE =        1
1210  DIAGRAM: 355_[2]_292_[3]_909_[3]_5_[8]_243_[4]_89
1211
1212
1213                                                            [2]
1214                                                            6.4e-06
1215                                                            ATGAAAAGCAGTGATTCACA
1216                                                              ++++++++ +++++ + +
1217301  ATGAAAATAAGTATTTAAAAGCATCCAGAATCAAAGAATAAAAATAATTAGTAATGGAAGAGGAATTGATTGAAA
1218
1219
1220
1221     G
1222     +
1223376  CTGAAACTAGTCATTGCCCTCTAATGTCCATTGAACAAAAGACATTTATAAGTATAGAAGAATAATTCATTAAAA
1224
1225                                                                         [3]
1226                                                                         5.6e-07
1227                                                                         AGTGCCC
1228                                                                         +++++++
1229601  TGTAACCTTCTAATTCTTTATCAATAATTATTAGATATTATTATGGAATTAATGGAATTAACATAAAGAATGCTA
1230
1231
1232
1233     TGGGCCTTTAAGAG
1234     ++ ++ ++++++ +
1235676  TGATTTTTTAAAGGTTTTATTTATTTATTGTATATAAATATACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGC
1236
1237                            [3]                       [8]
1238                            2.7e-05                   2.9e-05
1239                            AGTGCCCTGGGCCTTTAAGAG     AACTTCAAAATGTCTCTTTGA
1240                            + ++ + +  ++ +++++++      ++++   + ++++++++++++
12411576 ATGTTTGCTTGTTTGTTTGTTTGATTGTTTTAATCTATTAAGACTTTGAAACTGTCTGATGTTTTTTGTATGCAC
1242
1243                  [4]
1244                  1.8e-05
1245                  AGGAGAGAGCTCACACCTCTCCC
1246                  +++ ++ + ++++++ ++ + ++
12471876 CACTATCCTTCACAGGTAATATCTAACATTTGTTAGAACATCCTGAATGTGACATTTAACGTTTGCTTCTTTCCA
1248
1249
1250NM_001097
1251  ENSG00000100312
1252  LENGTH = 2000  COMBINED P-VALUE = 2.98e-05  E-VALUE =      1.1
1253  DIAGRAM: 1490_[8]_489
1254
1255
1256                                                                      [8]
1257                                                                      3.0e-10
1258                                                                      AACTTCAAAA
1259                                                                      ++++++++++
12601426 TAATAGGAGACCTTGTGATATTCAGCAACGGACAGGAAGGTGGGCTTTGCAGTTGTAAATTAGGAAAATTCAAAA
1261
1262
1263
1264     TGTCTCTTTGA
1265     ++ ++++++++
12661501 TGACTCTTGGAAAAGTGTGTTGATAGCATTCACTTGGAAGAGGAAAAGAAAACTTCCCCAACAACAATTAAGGAT
1267
1268
1269NM_023662
1270  ENSMUSG00000031592
1271  LENGTH = 2000  COMBINED P-VALUE = 3.09e-05  E-VALUE =      1.1
1272  DIAGRAM: 705_[8]_239_[3]_630_[8]_47_[8]_124_[4]_148
1273
1274
1275                                   [8]
1276                                   3.0e-05
1277                                   AACTTCAAAATGTCTCTTTGA
1278                                   ++ ++ ++ +++ ++++ +++
1279676  GTTGAATTTTATGTCACTATTTTTAGATAAAATTTTAATATGATTCTAGTAAAATTATCTGCCTGTTAAAGTTTA
1280
1281                                                                      [3]
1282                                                                      1.0e-05
1283                                                                      AGTGCCCTGG
1284                                                                      ++++++++
1285901  CGGCCTCTGAGCCTCTGCTTCCGTGTCAGCTTCTATTTCTCCTCTCTGATCCAGGCATCATATTTAGTACCCTTA
1286
1287
1288
1289     GCCTTTAAGAG
1290     ++ ++++ + +
1291976  GTTTTTATATGTATATGTACTCCATGGGGTGTATTGCTAGGGTTGTCCGCACTTCTAATTCTAGTGCTTGGGGCT
1292
1293                                              [8]
1294                                              1.2e-05
1295                                              AACTTCAAAATGTCTCTTTGA
1296                                               + ++ +++ +++ ++ +++
12971576 TATAATGTGTATATCATGTAGATCAATTTATCTGTGATACGTGTTTGATAGTGTATTCTTTTATATTTTTGGTTG
1298
1299                                       [8]
1300                                       5.0e-06
1301                                       AACTTCAAAATGTCTCTTTGA
1302                                       ++++  +++ +++ ++ ++++
13031651 TGAGCCTAGCCTTTAACAGCTGAGCCATCTCTCCAGCTCGATAGTGTATTCTTTAAGATAAGTGTTTGAAAGATT
1304
1305                                  [4]
1306                                  1.9e-07
1307                                  AGGAGAGAGCTCACACCTCTCCC
1308                                  ++++++++ ++ ++ ++  + ++
13091801 AACCTGATGACCTCAGATCACACAGTGGCAGGAGAGAACTGACTCCAGATAGTTGCTCTGACCTCTGCACACATG
1310
1311
1312NM_026576
1313  ENSMUSG00000016984
1314  LENGTH = 2000  COMBINED P-VALUE = 3.89e-05  E-VALUE =      1.4
1315  DIAGRAM: 435_[4]_299_[2]_565_[8]_367_[8]_248
1316
1317
1318                                                                 [4]
1319                                                                 2.0e-05
1320                                                                 AGGAGAGAGCTCACA
1321                                                                   ++++++ ++++++
1322376  AGAGGGGTAGCCTGCTGGACCAGCACATCTCCACTATCCAGAAGTGTTTTTATGTTTCCTTAGAAAGATAACACA
1323
1324
1325
1326     CCTCTCCC
1327       ++++
1328451  AGTCACTTAGTATCAATTTCAGTGAGGATGGTCAGGTATAAATTTCAAAAAAAAAAACCAAAAAACAAAAAAACA
1329
1330            [2]
1331            2.4e-06
1332            ATGAAAAGCAGTGATTCACAG
1333            + ++ ++++++++ + +++++
1334751  GAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCNNNNNNNNNNNNNNNNNNNNNNNNN
1335
1336                                                                         [8]
1337                                                                         3.2e-07
1338                                                                         AACTTCA
1339                                                                          ++++ +
13401276 TGGAAAGATTAGTTAGTTCTTTAAGATAAAGAATGTATGTAAGTACTGCTAACAAGCAGCCTTTAATGTACTTTA
1341
1342
1343
1344     AAATGTCTCTTTGA
1345     ++ +++++++ ++
13461351 AAGTGTTTCTGTGCCTTCCAGTTATTTTAAGTACGAACAGACTGAAGCAAGTCATGCAACAGTTAAGATTGTCTC
1347
1348           [8]
1349           6.1e-05
1350           AACTTCAAAATGTCTCTTTGA
1351            ++ + ++++ + +++++++
13521726 ATTACTTACATAATAAAGCTTTTTTTTTCTTTTTGCTAAACTAGACTTAATGCCTAGTCTGTGGGTTTCCTAACA
1353
1354
1355NM_021757
1356  ENSRNOG00000006655
1357  LENGTH = 2000  COMBINED P-VALUE = 4.60e-05  E-VALUE =      1.6
1358  DIAGRAM: 436_[3]_117_[2]_304_[4]_1041_[8]_16
1359
1360
1361                                                                  [3]
1362                                                                  2.4e-05
1363                                                                  AGTGCCCTGGGCCT
1364                                                                  ++++ ++   ++++
1365376  ATTTGGTAACCTTGCCCTAGTAATCTAGTGTTTCCTTTCAGAGAGTACTAGGAAATGTTGAAATGTCACAATCCA
1366
1367
1368
1369     TTAAGAG
1370     +++++
1371451  TTAAATAAATGAGCCCTGTATGGACAGGACATTTGGGTTAGTTTTCAGGATTAAAGAGTAAATATGCCGTGCACT
1372
1373                                                      [2]
1374                                                      2.0e-06
1375                                                      ATGAAAAGCAGTGATTCACAG
1376                                                      +  ++ ++++ ++++++++++
1377526  GTGACTGTATGTGTCAGGTTACTCCCGGAAAGCTGTTTCCTAGAAATGTAGCAGGACAAAGGATTCACAGAGCTT
1378
1379                                                                               [
1380                                                                               6
1381                                                                               A
1382                                                                               +
1383826  CTTTGTGACAAGTTCCAACAGCACTAATCCTATCAGTTGTCTTCTCTGCTTCTTTACTAGTATCTAACTATTGCA
1384
1385     4]
1386     .6e-05
1387     GGAGAGAGCTCACACCTCTCCC
1388     + +++ + + +++++  +++ +
1389901  GAACAAAACCCACACAACACTCAGCCTTCCCTGAAGACGTATCAGCATCTGCTGGAGATTCCTGGAAAACACATC
1390
1391                  [8]
1392                  1.1e-06
1393                  AACTTCAAAATGTCTCTTTGA
1394                  ++++  +++++++++ +++++
13951951 ATTTTACTACTAAAACTATAAACTGTTTATTTTAGAAATCAAACACAGGT
1396
1397
1398NM_019794
1399  ENSMUSG00000031701
1400  LENGTH = 2000  COMBINED P-VALUE = 4.85e-05  E-VALUE =      1.7
1401  DIAGRAM: 682_[8]_57_[3]_237_[8]_102_[4]_836
1402
1403
1404            [8]
1405            4.2e-06
1406            AACTTCAAAATGTCTCTTTGA
1407             ++++++ ++ +  ++ ++++
1408676  AAGTATATACTTCAGAAGGAATTGTTGAAATGAAGGGTAAGAAACTGGAATCAGGGCTGGTGCATTTCTAGGCTG
1409
1410               [3]
1411               7.5e-07
1412               AGTGCCCTGGGCCTTTAAGAG
1413               + +++++++  + +++ ++++
1414751  AGCTAATTGAATTGCCCTGAATTCTTCAAAGGCAGCCTAGAATACAACAGCAAATCTTTTGTCTCAAAACAAGTA
1415
1416                                                [8]
1417                                                7.5e-05
1418                                                AACTTCAAAATGTCTCTTTGA
1419                                                ++++  ++++++ +++ + +
1420976  AACATATGAAAGGATACATGAACATTAGTCATCAGGGAAACACAAATCAAAACTGCTTTCTATCCATGGGAGAGG
1421
1422                     [4]
1423                     1.0e-05
1424                     AGGAGAGAGCTCACACCTCTCCC
1425                     ++  ++++++++ + ++ +++++
14261126 AGAGAGATGGTTCAGTAGTGAAGAGCACCAGCTACTCACCCAAAGGACAGGAGTTCAAATCCCAGCACCCACATG
1427
1428
1429NM_019343
1430  ENSRNOG00000003618
1431  LENGTH = 2000  COMBINED P-VALUE = 4.94e-05  E-VALUE =      1.7
1432  DIAGRAM: 228_[8]_40_[3]_58_[2]_655_[8]_70_[4]_241_[3]_580
1433
1434
1435        [8]                                                          [3]
1436        1.3e-05                                                      3.3e-05
1437        AACTTCAAAATGTCTCTTTGA                                        AGTGCCCTGGG
1438         ++++ ++++++ ++ +++++                                        + ++ + +  +
1439226  CTTGGCTTTAAAATGCTTGTTTGATTATTTTCTCCTTTCAAAGGTTGAAAAGCACAGAACTTTCATTGTCTTAAT
1440
1441                                                                         [2]
1442                                                                         7.8e-05
1443     CCTTTAAGAG                                                          ATGAAAA
1444     + ++++++                                                            + +++++
1445301  CTTTTAAACATAAGAAAGAGTTGAGGGTAAGGGCAAAAAAAATGCATGCAACTATTGTTAATAAGGAAAAGGAAA
1446
1447
1448
1449     GCAGTGATTCACAG
1450     ++ ++ ++ ++ ++
1451376  CATGGAACACAGACACAAAGAGGAACTTATCCTTCATTGTCTACACCATGCTATACACTTCTTTCCAAACCTTAG
1452
1453                                                                          [8]
1454                                                                          7.0e-0
1455                                                                          AACTTC
1456                                                                          ++++
1457976  CAAGAGAAGCAGAAATGTTGTAAACGCGGCAAGCTTTCGTGCTGACACTTGCAAAGCCTAAGTAGCTGAAAATCT
1458
1459
1460     5
1461     AAAATGTCTCTTTGA
1462     +  + +++++ ++++
14631051 AGCAGGGTTCCTTGAGAGTTGATTCCTAATCTTCTCTAATATCATCGATTTGATAAAGAGTTGCTGCGGGTTAGA
1464
1465               [4]
1466               1.1e-07
1467               AGGAGAGAGCTCACACCTCTCCC
1468               ++++++++ +++ +++++ +  +
14691126 CCTTGCTCAAAGGACAGAAATCTCACTTGATTCTATCTCTTGTTAAAGCCTGTAGGGGTGGTGAGTGAGCCCTTG
1470
1471                                                      [3]
1472                                                      6.2e-05
1473                                                      AGTGCCCTGGGCCTTTAAGAG
1474                                                      + +++  +++++ + ++++ +
14751351 AAAAAATAATGAATGAGGTTGATTTTTCTCTACAGATTTTCTATTTGCTATTACATTGGTCACATAAGCGATTTA
1476
1477
1478NM_144715
1479  ENSG00000163576
1480  LENGTH = 2000  COMBINED P-VALUE = 5.47e-05  E-VALUE =      1.9
1481  DIAGRAM: 5_[3]_464_[4]_57_[3]_606_[8]_782
1482
1483          [3]
1484          3.6e-06
1485          AGTGCCCTGGGCCTTTAAGAG
1486          ++++ + ++ ++++ ++++++
14871    TTTCAAATGTCGTGCTCCAATAAGAGAAGACAGTATACATAAAGTAGATTTTTAGGCCAGATATAGTAAATGCAT
1488
1489                                             [4]
1490                                             3.9e-05
1491                                             AGGAGAGAGCTCACACCTCTCCC
1492                                                ++++  ++++++++++++++
1493451  CTATGGTCTTCCCAGTGAGAAGCAGCTCAAGACGCAGCTGCTTAAAGGAAACACACCTCTCCCCAGGTCTTCCAA
1494
1495                                                  [3]
1496                                                  2.1e-05
1497                                                  AGTGCCCTGGGCCTTTAAGAG
1498                                                  + + ++ +++ + +++++
1499526  ACACCTTGGCTGAAACTAGGCAGAAGCAGAAAAAAGGGAGAGAGAATTTCCTTGGATTTTTAACTCACTGGACAC
1500
1501                                                                             [8]
1502                                                                             3.6
1503                                                                             AAC
1504                                                                             +++
15051126 TGATGACTTAAGCCAAACGTGTTAAGAAAGCATGAGTTTAGAGATCATTTGGAAAAGATTGCTTATTCCCCAAAC
1506
1507
1508     e-07
1509     TTCAAAATGTCTCTTTGA
1510      + ++++++++++ +++
15111201 CTTATAATGTTTTCTTTTGTCTTGTTTTTGCTGTCTTAAAAGCTTTCAATTTGTGGTTTTTAATATATGGAAAGA
1512
1513
1514NM_010510
1515  ENSMUSG00000048806
1516  LENGTH = 2000  COMBINED P-VALUE = 5.54e-05  E-VALUE =        2
1517  DIAGRAM: 86_[3]_1326_[2]_153_[2]_277_[8]_74
1518
1519
1520                [3]
1521                3.5e-07
1522                AGTGCCCTGGGCCTTTAAGAG
1523                ++++  +++++++++ ++ ++
152476   ATGAAGACACAAATGTGCTGGTTCTTAAACAGCACCACACAGATGCCTTTCTGTCTTTTATGGTGCTGTACTTAA
1525
1526             [2]
1527             4.3e-07
1528             ATGAAAAGCAGTGATTCACAG
1529             + + +++++++++++  ++++
15301426 CAGATGTGAAGTGAAGAAGGGACAGACACCCTCAGCTTCCCCAGGGGATCATGAGGAGCAAGATAAAGGCATTTA
1531
1532                                     [2]
1533                                     4.4e-05
1534                                     ATGAAAAGCAGTGATTCACAG
1535                                     +  ++++++ +++++ ++  +
15361576 ATCATTTCCCTGATGGCAAAGGTTTTGGGGTAAATAAAAGAGGTGATACATTCCTCTGTCTGGCCACCCTAAATG
1537
1538                                   [8]
1539                                   8.8e-05
1540                                   AACTTCAAAATGTCTCTTTGA
1541                                    ++++ + ++ +   + ++++
15421876 CCAGAAACTATACTACTTTTTTTAAAGGAGTACTTTACAAAGAACCCTTTATAAGAAGTGTCCAGCAATTATTAA
1543
1544
1545NM_009241
1546  ENSMUSG00000029682
1547  LENGTH = 2000  COMBINED P-VALUE = 5.89e-05  E-VALUE =      2.1
1548  DIAGRAM: 208_[2]_1224_[3]_294_[4]_209
1549
1550
1551                                                               [2]
1552                                                               2.5e-05
1553                                                               ATGAAAAGCAGTGATTC
1554                                                               + ++++  ++++ ++++
1555151  CATAGTTATTATCAATGCTTCCACCATGCCTATGCAATAAAGTCACTATAAAACCTTGAAAGAATTAAGGAATTC
1556
1557
1558
1559     ACAG
1560      +++
1561226  TCAGGTCATAGATCTTGTGAAGATTTCTGGATCGAGGTTCACCTGGGGAAGGTTTGAAGCTTTAACTAGCTTCTC
1562
1563                                 [3]
1564                                 2.1e-08
1565                                 AGTGCCCTGGGCCTTTAAGAG
1566                                 +++++++++ ++++ ++++ +
15671426 AAGTTCCAGGACACCCAGGGAATTTAACAATACCATGATCCAATAAATGAGTCAACGAACAATCAAACAAACAAA
1568
1569                                                [4]
1570                                                4.3e-05
1571                                                AGGAGAGAGCTCACACCTCTCCC
1572                                                + + ++++ +++ ++++ ++  +
15731726 TCTAAAATACTGATAGATACAGGACCCTATATATCTGGGAATGAAGTAAGAAAAATAACTACATTCAGTTTTCTG
1574
1575
1576NM_014783
1577  ENSG00000175306
1578  LENGTH = 2000  COMBINED P-VALUE = 5.94e-05  E-VALUE =      2.1
1579  DIAGRAM: 419_[3]_585_[8]_774_[2]_159
1580
1581
1582                                                 [3]
1583                                                 9.5e-09
1584                                                 AGTGCCCTGGGCCTTTAAGAG
1585                                                 + ++ +++++++++++++++
1586376  CTTTAAAAAAGGATCACGACGTAGAAAAAGACACAACACTGAAGATTGTCATGGGTCTTTAAGAAAAGGAAATTT
1587
1588                                                       [8]
1589                                                       3.9e-05
1590                                                       AACTTCAAAATGTCTCTTTGA
1591                                                       +++  +++++++ ++++ ++
1592976  CTTTTCTTTGGATTGGGAAGGGTAAAATATCCGAAGATTTGAACTCCAAAAGAAACAAAATGATTCTATGCAAAC
1593
1594                         [2]
1595                         6.5e-05
1596                         ATGAAAAGCAGTGATTCACAG
1597                           ++++++++++++  + ++
15981801 CCGCCCCAAAAACTGGCCTTGAAGGAACAAGTGAAACTCATCCTGCTTTTCATGTTTGCTGGGTTTGCCCGTTAC
1599
1600
1601NM_006056
1602  ENSG00000171596
1603  LENGTH = 2000  COMBINED P-VALUE = 7.19e-05  E-VALUE =      2.5
1604  DIAGRAM: 724_[2]_641_[8]_593
1605
1606
1607                                                      [2]
1608                                                      1.8e-09
1609                                                      ATGAAAAGCAGTGATTCACAG
1610                                                      ++++++++++++++++ ++++
1611676  CATCCCTGTTTCTCAAGGGGTGAGTTCAGATCTGCTATTCCCGTTTTCCATGGGAACCAGTGACTGACAGGACCT
1612
1613                                         [8]
1614                                         6.3e-05
1615                                         AACTTCAAAATGTCTCTTTGA
1616                                         +++++   ++ +++++ +++
16171351 CTCAGGGGCAGCACTCAGGTGCTCACGGCTCTGCACAGCTTTTCACAGGCTCCTTTCTCTGCAGAATCTCCCTGT
1618
1619
1620NM_175619
1621  ENSG00000182223
1622  LENGTH = 2000  COMBINED P-VALUE = 7.51e-05  E-VALUE =      2.7
1623  DIAGRAM: 563_[2]_38_[4]_167_[8]_36_[8]_1110
1624
1625
1626                                           [2]
1627                                           1.0e-06
1628                                           ATGAAAAGCAGTGATTCACAG
1629                                           + ++++++++ ++ +  ++++
1630526  GAAGATGAAGATACAGATATTTCTTATAAAAAACTAAAAGAAGAGGAAATGGCAGACACTTCCTATGGCACAGTG
1631
1632                           [4]
1633                           3.3e-07
1634                           AGGAGAGAGCTCACACCTCTCCC
1635                            +++++ ++++++ +++++++ +
1636601  AAAGCAGAAAATATAATAATGATGGAAACCGCTCAGACTTCTCTCTAAATGTGGAGATACACAGGAGCTTCTATC
1637
1638                                                                   [8]
1639                                                                   9.7e-05
1640                                                                   AACTTCAAAATGT
1641                                                                   +++++  ++++
1642751  TCATACATGTAACAATTCTGATCTTTTTAAGGTTCACTGGTGTATTAACCAAACGTTGTCACAAATTACAAATCA
1643
1644                                                 [8]
1645                                                 6.5e-05
1646     CTCTTTGA                                    AACTTCAAAATGTCTCTTTGA
1647      +  ++++                                     ++++ ++  ++++++++ +
1648826  ATGCTGTAATATAATTTGCACCTGGAATGGCTAACGTGAAGCCTGAATTAAATGTGGTTTTTAGTTTTTACCATC
1649
1650
1651NM_000994
1652  ENSG00000144713
1653  LENGTH = 2000  COMBINED P-VALUE = 7.57e-05  E-VALUE =      2.7
1654  DIAGRAM: 327_[4]_87_[8]_302_[8]_944_[8]_254
1655
1656
1657                                [4]
1658                                4.8e-07
1659                                AGGAGAGAGCTCACACCTCTCCC
1660                                +++++  ++++ +++++ +++ +
1661301  AGGCTGTGCTGTCAGCTGTAAAAGATCAGGAGGCAGCAGACACCACTCTGGTTTCTTCACTGCATTCAGCAATGC
1662
1663                                                                   [8]
1664                                                                   1.7e-06
1665                                                                   AACTTCAAAATGT
1666                                                                   ++++++++++ ++
1667376  CTGAAGTTAGTGCTCAGGCCGGGCATCTCAAAAGAAAAGATACTTGAGTTATTCACATTTTAAAATTCAAAACGG
1668
1669
1670
1671     CTCTTTGA
1672     +++ +++
1673451  TTCATTTTTAAGTGGCAGTGATGAATCAGAAATTTGGAAGATGATACGGGTTTCTTTTTTCCAGGGAGGAGGAAT
1674
1675               [8]
1676               1.0e-05
1677               AACTTCAAAATGTCTCTTTGA
1678               ++++++ ++ +  +++ +++
1679751  AATAAAGATTAGATTCTAAGTTACTTCTTTCCTCTGCACGACTCGTCTCCAATTGTTAATCNNNNNNNNNNNNNN
1680
1681     [8]
1682     8.4e-05
1683     AACTTCAAAATGTCTCTTTGA
1684     ++  + + ++++ ++  +++
16851726 AGGCTAAGAATGACTACTTGTGGCTTGGGAGCCACAAGCTTCTTCAAGTGTCTCAGAACCTACCTGGTGTGAGGG
1686
1687
1688NM_031922
1689  ENSG00000135597
1690  LENGTH = 2000  COMBINED P-VALUE = 7.61e-05  E-VALUE =      2.7
1691  DIAGRAM: 396_[4]_58_[8]_92_[8]_253_[8]_418_[2]_676
1692
1693
1694                          [4]
1695                          3.0e-05
1696                          AGGAGAGAGCTCACACCTCTCCC
1697                          +  +++++ +++ ++++ ++ ++
1698376  GAATGTACTCCTCTAGAGAGCATTAAAGATATACCACTACAAAGTACTAAAAAGTTTTCTATAATTTTTAAGTGT
1699
1700                                [8]
1701                                2.5e-05
1702                                AACTTCAAAATGTCTCTTTGA
1703                                +++++ ++ +  + +++++++
1704451  TATTTATTGGAAGGCTAAATTCTAAGAAGCTTTAACAAATATTTTTGACATTGTTAAATTAGAAGGCTATTTTTA
1705
1706                                                                      [8]
1707                                                                      2.0e-07
1708                                                                      AACTTCAAAA
1709                                                                       ++ + ++++
1710526  AAAAGCATATTTTAAAAAACAAAACTAAATGGAAACAGCAAAACTTGCTTGTAATGAAATACAGCTGAGTAAAAA
1711
1712
1713
1714     TGTCTCTTTGA
1715     +++++++++++
1716601  TGTTTCTTTGAAAACAAAGACACTCAGAAAAACAGGTGTTGAGTAGTTTCCTGGGCCTTTAATGCTTTAAATTTA
1717
1718                                            [8]
1719                                            9.3e-05
1720                                            AACTTCAAAATGTCTCTTTGA
1721                                             + ++ ++ ++ ++++ +++
1722826  CAAAGTCTATCGGTGCAGTTTAGGACTGTGAATCTATAGTATTTAAACATTTTTTCTTTCAGAAATGAAAATACA
1723
1724                                 [2]
1725                                 8.7e-06
1726                                 ATGAAAAGCAGTGATTCACAG
1727                                 + +++++++  + +++++ ++
17281276 AAGTTTTAAAACAATACTTAAAAAAATTAAGAAAGGCCATTACTCATACCTATTTCATAAGTTTACATGACTGCT
1729
1730
1731NM_007260
1732  ENSG00000011009
1733  LENGTH = 2000  COMBINED P-VALUE = 7.96e-05  E-VALUE =      2.8
1734  DIAGRAM: 711_[8]_915_[2]_332
1735
1736
1737                                         [8]
1738                                         4.6e-07
1739                                         AACTTCAAAATGTCTCTTTGA
1740                                         +++++  +++++++++ +++
1741676  CTCTGGGCCTGGGGGAAAGTGCTTTGTTGAGCTTCCAACTTTGTACTGTTTTCTTTTTCTNNNNNNNNNNNNNNN
1742
1743                                                                             [2]
1744                                                                             3.5
1745                                                                             ATG
1746                                                                             +++
17471576 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTCAGAGTGTGTCATTCCATTCATGATCCTGGAATAGGGCATG
1748
1749
1750     e-07
1751     AAAAGCAGTGATTCACAG
1752     ++++++++++ +  ++++
17531651 AAAGCCAGTGGCAGACACCCGAGGCCTTAAGAGGTGTGTCCCATGAGGATGGGAAGGTGGTAAAGTTTATGCAAA
1754
1755
1756NM_011839
1757  ENSMUSG00000046212
1758  LENGTH = 2000  COMBINED P-VALUE = 8.15e-05  E-VALUE =      2.9
1759  DIAGRAM: 111_[8]_61_[8]_414_[8]_491_[4]_211_[8]_213_[3]_64_[8]_286
1760
1761
1762                                         [8]
1763                                         7.8e-06
1764                                         AACTTCAAAATGTCTCTTTGA
1765                                         +++++  ++ + ++++++++
176676   TTCTTTGAAGCTATTTGTTCTTTTATAGGAAGCTGTAGCTTTTAAGTTTTTTTTGTCTTTCTGTAGCATAATTAC
1767
1768                                                [8]
1769                                                9.3e-05
1770                                                AACTTCAAAATGTCTCTTTGA
1771                                                + +++ ++ +++   +++++
1772151  ATTAGTTTTCTTTCTCTGTTGCTTGTAAAACATAAGATATTTTACCTTAATCATGAAATTTGTCTTGTACTGAAA
1773
1774                                 [8]
1775                                 2.4e-05
1776                                 AACTTCAAAATGTCTCTTTGA
1777                                 +++++++ ++  ++++ ++ +
1778601  CAAACATACTCCTTTGAAAATTTTCTTAAAATTCAGACCTTCTCCTTAAGAGGATAAATTGTTTTATTGTTCAAA
1779
1780                    [4]
1781                    4.7e-07
1782                    AGGAGAGAGCTCACACCTCTCCC
1783                     ++ ++++ ++++++++  +  +
17841126 TCAAATCTTGTCCTTTGGCCAGAAAACAAACCAGTTTCTTTAGGATATTTTCAGTTTTCCTAATTATTTTTTATT
1785
1786                             [8]
1787                             2.3e-06
1788                             AACTTCAAAATGTCTCTTTGA
1789                             +++++++++++  ++++++ +
17901351 GTTTTAAGACCTTTATATATAGGTAGATTCAAAATAATTTTTGAAATTTAATTAAAATGATACTGTTTATTGCAT
1791
1792                                      [3]
1793                                      6.5e-05
1794                                      AGTGCCCTGGGCCTTTAAGAG
1795                                       +++ + +  +++++++++++
17961576 AACTTAAAAAGAATAGTTGAAGAAAGAGCATGACATGACTTCATTCTTTAAAAGCAATTTTAAAAACATTTAGAA
1797
1798                                                [8]
1799                                                1.4e-05
1800                                                AACTTCAAAATGTCTCTTTGA
1801                                                ++ ++ +++  ++++++++++
18021651 CTAGATTTTAAAAAACCTTACAGCATTAAAAAAATCCTGATATAATTTTAAATAGGCTTTTTTATTATTTTAAAT
1803
1804
1805NM_009531
1806  ENSMUSG00000030094
1807  LENGTH = 2000  COMBINED P-VALUE = 9.75e-05  E-VALUE =      3.5
1808  DIAGRAM: 90_[8]_729_[2]_1002_[3]_87_[2]_8
1809
1810
1811                    [8]
1812                    5.5e-07
1813                    AACTTCAAAATGTCTCTTTGA
1814                     +++ ++ + ++++++++++
181576   CCGGCCTCAAGCAGTTGCTGCAGAGTGGTTCTTTTTGCATTTAATGCCCATCACTATCCTCATCCCAAATAAAAT
1816
1817                    [2]
1818                    7.6e-05
1819                    ATGAAAAGCAGTGATTCACAG
1820                     + ++++ ++ +++++++  +
1821826  CTACTTTGTCTTGGCTTTAAAGTAAATGACTCATGCTTCATGAACATTGAGAATGTGTCAGAAGCATGATGCACA
1822
1823                                                                    [3]
1824                                                                    1.9e-05
1825                                                                    AGTGCCCTGGGC
1826                                                                    ++++++++++++
18271801 CTCTGACAAAAGAGCAGCAGGCAGTACTGGAAACCTGACTCAGGAAGGCAGGCCTGAAAAGCAAATGCCCTGGGT
1828
1829
1830
1831     CTTTAAGAG
1832     ++  + +++
18331876 CTGAAGGAGAGGAAAGCAAGCGTTGTGAACGGCACTAAAGGAAGATTTGTCTCAGTGCTCCAGTACCCATAATTT
1834
1835                          [2]
1836                          2.7e-06
1837                          ATGAAAAGCAGTGATTCACAG
1838                          + +++++ ++ ++++  + +
18391951 CCCAGTGAGTTCTATTTAAAAACAGAAATAAAGGACAGATAAGGCATTGT
1840
1841
1842NM_011717
1843  ENSMUSG00000024050
1844  LENGTH = 2000  COMBINED P-VALUE = 9.76e-05  E-VALUE =      3.5
1845  DIAGRAM: 146_[8]_277_[8]_589_[4]_152_[2]_750
1846
1847
1848                                                                            [8]
1849                                                                            9.5e
1850                                                                            AACT
1851                                                                             +++
185276   ATAGCCAAAACTGTTCTTCACAATTTAGTTGGGGCAGGGGAGGTAGAGAAGTATAGATTAGGCTGTTGCTGTGAT
1853
1854
1855     -05
1856     TCAAAATGTCTCTTTGA
1857     + +++  + ++ ++++
1858151  TAAAAGGGCTTGTTTTTACCATTTGTCCAGATACAATGTCCTGACGATAATTTCTCCCCACTTTTGCAAAAGAAA
1859
1860                                                                          [8]
1861                                                                          1.1e-0
1862                                                                          AACTTC
1863                                                                          ++ ++
1864376  GCACTTGGTGTGATTTCACCCAAGGTCTTGTTTAATTTCTGATGTCCTCACAGGTTGAGCTTAGCCTAAAAGTTA
1865
1866
1867     6
1868     AAAATGTCTCTTTGA
1869     + + +++++++++++
1870451  AGATTGTTTCTTTGAGACCATGGAGTGGTTTAAGCAAAGACTTAAGCTATGCTCAGGAGTTTTAGGAAAAGGTCT
1871
1872         [4]
1873         1.4e-05
1874         AGGAGAGAGCTCACACCTCTCCC
1875         ++++++ + ++ ++ +++ + ++
18761051 AAGTAGGAGATAACAGAATCTTATTACCTTAGAAATGTTCAGTAAACATTAGCTGAGCAAGAAAATAGCATTGTT
1877
1878                                  [2]
1879                                  2.4e-06
1880                                  ATGAAAAGCAGTGATTCACAG
1881                                  + ++ ++++++++ + +++++
18821201 TTTGAGGCCAGCCTAGTTTATAGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTTGAAAAGCAAAA
1883
1884
1885NM_011291
1886  ENSMUSG00000025922
1887  LENGTH = 2000  COMBINED P-VALUE = 9.78e-05  E-VALUE =      3.5
1888  DIAGRAM: 678_[3]_299_[2]_435_[8]_161_[4]_317_[4]_1
1889
1890
1891        [3]
1892        2.5e-05
1893        AGTGCCCTGGGCCTTTAAGAG
1894        + ++ +  ++ ++++ ++ +
1895676  GATATTATCTAGGACCATCAACAAGAGAAATTACTTCATAACCGGACAAGAACTTTCCACCAACAGTACCCAAGG
1896
1897                            [2]
1898                            2.4e-06
1899                            ATGAAAAGCAGTGATTCACAG
1900                            + ++ ++++++++ + +++++
1901976  AGCCTGGTCTATAAGTAAGTTCCAGGACAGCCAGGGTTACACAGAGAAACCCCCAAAAGAAAAACAAAAACCCCA
1902
1903                                  [8]
1904                                  3.8e-06
1905                                  AACTTCAAAATGTCTCTTTGA
1906                                  ++++  +++++++  +++++
19071426 GAAAAGCCTTTAACAAGTTGTCTTTCAAAAACTATAAACTGGAACTTTGCACATCATAGGCTGTTGATCTGACTG
1908
1909                                                                  [4]
1910                                                                  3.7e-05
1911                                                                  AGGAGAGAGCTCAC
1912                                                                  + + ++ + +++++
19131576 TGCCAAGCTGTGACTGTTTATTAACTGACCAGATTACAAAAATACAATGGGTGACACCTGAAAGGGAAAAAACAC
1914
1915
1916
1917     ACCTCTCCC
1918     ++   + ++
19191651 ACGAGTTAGAGACTGTCTTCCAAGCCGCACATCAGCACCCCCCCGTAAAGGAGCACACTTCCATTAAAGACACAT
1920
1921                               [4]
1922                               9.6e-05
1923                               AGGAGAGAGCTCACACCTCTCCC
1924                               +  +++ + +++ +++++++ ++
19251951 CGATTGCCAGAAATAGATTCTGTCTCAAAAAACAACACTAACTTCTTACC
1926
1927
1928NM_000324
1929  ENSG00000112077
1930  LENGTH = 2000  COMBINED P-VALUE = 1.01e-04  E-VALUE =      3.6
1931  DIAGRAM: 1220_[8]_55_[3]_105_[2]_557
1932
1933
1934                         [8]
1935                         1.6e-07
1936                         AACTTCAAAATGTCTCTTTGA
1937                           +++ ++++++ ++++++++
19381201 NNNNNNNNNNNNNTTTGATTTTCTTAAAAATGATTTTTTGACGATGTCAGTTATCTTTTCTAAAATTTAACTTTT
1939
1940                          [3]
1941                          2.0e-06
1942                          AGTGCCCTGGGCCTTTAAGAG
1943                          + ++ + ++ ++ +++++++
19441276 TACAACATTCTATAATGAGACATTAACTTGATTTTTTAAAAATAGCAAATACATGATAAATATTTAAATTGAGTG
1945
1946                                                                             [2]
1947                                                                             6.3
1948                                                                             ATG
1949                                                                             + +
19501351 TGGACTAAATATGAAGTGTGTGTGTGTGCACCTGTGTGCTTGTTACTGACATGAATTCCAACTACCAAAGAAAGG
1951
1952
1953     e-05
1954     AAAAGCAGTGATTCACAG
1955     ++++ ++  ++++ +
19561426 AGAGTCAAAGACTGATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGACATTTTATGCAAAATAGACTTTGATCA
1957
1958
1959NM_026408
1960  ENSMUSG00000024534
1961  LENGTH = 2000  COMBINED P-VALUE = 1.05e-04  E-VALUE =      3.7
1962  DIAGRAM: 28_[2]_151_[4]_27_[4]_227_[4]_311_[8]_220_[2]_904
1963
1964                                 [2]
1965                                 3.6e-05
1966                                 ATGAAAAGCAGTGATTCACAG
1967                                 +  +++++++   ++ +++++
19681    TAGGAGAAGCAAACCAGCAAACAGTCCAAACAAAAGCAAACACACACAGTCTATGTGGGAAAGTGTATACAAGCC
1969
1970                                                       [4]
1971                                                       5.6e-06
1972                                                       AGGAGAGAGCTCACACCTCTCCC
1973                                                       ++++++ + ++++++  ++++ +
1974151  GAAAAAAAAAGTAACAAAAGGACTATAAAAAATAGTAGGGGAAATAACTGAGGAAACATCACAAAGATCTCTGCC
1975
1976                              [4]
1977                              2.0e-06
1978                              AGGAGAGAGCTCACACCTCTCCC
1979                               ++ ++++ +++ + ++++++++
1980226  TTACACTGTGGCTTGCTGGTTGCTGTGGTCAGAAAAACCTCTTCACCCCCAGGCAATCTATTTTCTGCACATACA
1981
1982                                                       [4]
1983                                                       9.1e-05
1984                                                       AGGAGAGAGCTCACACCTCTCCC
1985                                                       + + ++++++++++ ++  + ++
1986451  CAATGAAGTCAGGAGGGCAGGAACTGACATTTCTACTCTTGTCTAGCTCCACGTCAGAGAAAACGCCAATTCCAT
1987
1988              [8]
1989              5.8e-07
1990              AACTTCAAAATGTCTCTTTGA
1991               ++++ ++++++++++ +++
1992826  TAGGGAGGAGGATTAAAACTGTCTTCTGGTGACATTCAAGGCTGTCATTTCTAGGGGTGCCATTTACTTATGGTA
1993
1994                              [2]
1995                              7.3e-05
1996                              ATGAAAAGCAGTGATTCACAG
1997                               +++ +++++++ ++ ++  +
19981051 CTTTCTTACTGGCAGTGTATTTTCTGTGACAGGCAGGCATACATCCCTCTGCCAGCACCCAGGTAGTATTGGATT
1999
2000
2001NM_026065
2002  ENSMUSG00000009550
2003  LENGTH = 2000  COMBINED P-VALUE = 1.05e-04  E-VALUE =      3.7
2004  DIAGRAM: 107_[8]_176_[3]_286_[4]_735_[8]_610
2005
2006
2007                                     [8]
2008                                     1.7e-06
2009                                     AACTTCAAAATGTCTCTTTGA
2010                                      +++  ++++++++++++ ++
201176   GAATGGGGGATGAGCCAAAAGACACAGACAAGTGCTATAAAATGTCTTTTAGACTTTAGTGACCAATTCCACTCA
2012
2013         [3]
2014         8.7e-05
2015         AGTGCCCTGGGCCTTTAAGAG
2016          + + + +++++ +  ++++
2017301  TTTTGGCATTTTGGTTTAAAAAAAAAAACCCAGAGATATTAGAATACTATTTTCATGTTTTGGTTTTACTCTCAG
2018
2019                [4]
2020                3.0e-07
2021                AGGAGAGAGCTCACACCTCTCCC
2022                  ++++++++++++++++ ++++
2023601  ATTAAGACTTCCTGACAGAGATCAAACCTGTCCCAAAGAACTGGACACCCCAAGCAGCAAGACCTAGTCTACCCA
2024
2025                        [8]
2026                        5.2e-05
2027                        AACTTCAAAATGTCTCTTTGA
2028                          + +++++++++ +++ +++
20291351 ACTGATGATGTAAAAATAGTTAATCATACTGGATTTATGACAATAAGTAACTGGGCTGTGCAGGGTGGATCACTC
2030
2031
2032NM_010324
2033  ENSMUSG00000025190
2034  LENGTH = 2000  COMBINED P-VALUE = 1.06e-04  E-VALUE =      3.7
2035  DIAGRAM: 605_[2]_42_[2]_1105_[3]_185
2036
2037
2038          [2]                                                            [2]
2039          8.1e-05                                                        1.6e-07
2040          ATGAAAAGCAGTGATTCACAG                                          ATGAAAA
2041          + +++++++++ + +   +++                                          + ++ ++
2042601  CCAGCACGGGAGGCAGAGGCAGGCAGATTTCTGAGTTTAAGGCCAGCCTGGTTTACAGAGTGAGTTCCAGGACAG
2043
2044
2045
2046     GCAGTGATTCACAG
2047      +++++++ +++++
2048676  TCAGGGATACACAGAGAGACCCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAGGTGGGGGGTGGTTACTGGGTAG
2049
2050                                                                          [3]
2051                                                                          2.4e-0
2052                                                                          AGTGCC
2053                                                                          +  + +
20541726 ATACACTAGGGACATAGCAGCTCCAGCGGTGACGGAAAGAGCTGGTATTCTAGAATCCCTCTAAATGATATCATC
2055
2056
2057     6
2058     CTGGGCCTTTAAGAG
2059     ++ +++ +++++++
20601801 CTAGTTTCTTAAGAAAATGGCTGGTGTCTGAACGATAAACCTACAAAAGCAACATGGACTTACAGCCTGGATCCT
2061
2062
2063NM_028381
2064  ENSMUSG00000003208
2065  LENGTH = 2000  COMBINED P-VALUE = 1.06e-04  E-VALUE =      3.8
2066  DIAGRAM: 34_[8]_1159_[3]_6_[2]_433_[2]_284
2067
2068                                       [8]
2069                                       2.5e-06
2070                                       AACTTCAAAATGTCTCTTTGA
2071                                       +++++ + +++  +++++++
20721    GACGTGCACCACCACCCAATAGGAATTACTATTAAAATTAAGAATTCCTCTTTGCCCATTTTAAATTTTTAAATA
2073
2074                   [3]                        [2]
2075                   8.3e-05                    4.6e-05
2076                   AGTGCCCTGGGCCTTTAAGAG      ATGAAAAGCAGTGATTCACAG
2077                   +  + +++++++ ++ +++ +      + ++ +++++++  + +++++
20781201 TTTCTGAGTTCGAGACCAGCCTGGTCTATAAAGTGAGTTCCAGAACAGCCAGGACCACACAGAGAAACCCTGTCT
2079
2080                                                  [2]
2081                                                  1.7e-07
2082                                                  ATGAAAAGCAGTGATTCACAG
2083                                                  + ++ ++++++++++ +++++
20841651 GATCTCCTTTAGTTTGTGACCACCCTGAGCTACATAGTGAGTTACAGGACAGCCAGGGACACACAGTGAGACTCT
2085
2086
2087NM_033030
2088  ENSG00000152430
2089  LENGTH = 2000  COMBINED P-VALUE = 1.07e-04  E-VALUE =      3.8
2090  DIAGRAM: 189_[3]_218_[8]_1213_[8]_53_[2]_3_[4]_170_[3]_26
2091
2092
2093                                            [3]
2094                                            6.2e-05
2095                                            AGTGCCCTGGGCCTTTAAGAG
2096                                            + ++  ++ ++++++ ++++
2097151  NNNNNNNNNNNNNNNNNNNNNNNGTAACATGTTTGGGCTATTAAGCTAGGCCATGAAGAAGGCTGTATGATATCC
2098
2099                                                          [8]
2100                                                          8.8e-05
2101                                                          AACTTCAAAATGTCTCTTTGA
2102                                                           +++ ++++++   +++++
2103376  GTTGTGGAAGAAACACACTTGGGTATCAATTATCATCAAAATTCCTTATCCAATAATACATAATTAATTTTTATT
2104
2105                 [8]
2106                 5.4e-07
2107                 AACTTCAAAATGTCTCTTTGA
2108                  ++++ ++++++ +++++ +
21091651 TTAAAAGTATTATAATTAAAAATGATTCTTATCCTAAATATGAAAATAAATATCAAATAATATGAAACATAACAT
2110
2111                [2]                     [4]
2112                3.1e-05                 1.3e-05
2113                ATGAAAAGCAGTGATTCACAG   AGGAGAGAGCTCACACCTCTCCC
2114                +++++++ ++ + ++ ++ ++   ++ +++ + ++ +++++++++
21151726 CTAATTGTTTGATAAGAAAAAATAACACAAAGCAGAGAAAATAAAAGACACCTCACTATTCCCAATGTGGTTATT
2116
2117        [3]
2118        4.3e-05
2119        AGTGCCCTGGGCCTTTAAGAG
2120        ++++   ++ +  +++++
21211951 CTGAGTATGGTGAGGTATTAACTAACACTAAGTTTCACAACGGGCAGCTT
2122
2123
2124NM_003215
2125  ENSG00000135605
2126  LENGTH = 2000  COMBINED P-VALUE = 1.11e-04  E-VALUE =      3.9
2127  DIAGRAM: 97_[8]_88_[3]_758_[4]_369_[2]_602
2128
2129
2130                           [8]
2131                           9.6e-06
2132                           AACTTCAAAATGTCTCTTTGA
2133                            +++++++++++ ++   ++
213476   ACAGTCTCATTCTAAAAACAAGTACTTCATACTGATTGCATTTCTACACACACATATGCAGATTTCTGGACACTC
2135
2136                                                             [3]
2137                                                             1.3e-06
2138                                                             AGTGCCCTGGGCCTTTAAG
2139                                                             +  +++ ++++++++++++
2140151  TTTCTGTTTTTCTTTCATTTATGTTCTCAATGCTGAACCTTTATTAGAATTACATCATCACTGTGGTTCTTTAAA
2141
2142
2143
2144     AG
2145
2146226  TAAGAAACAAAACTCTGTCACAACATCTGAGGAAATTATCTTTTAATGTCCCCAAGCTCTATGCCTTGGAAAAAA
2147
2148               [4]
2149               3.5e-05
2150               AGGAGAGAGCTCACACCTCTCCC
2151                +++++++  ++ ++  + +++
2152976  TTCATCCCACTGGAAAGCATAACCATGTGTCAACTAATTAACAGAGCAACTTTAATGAAGACACAGCATATTCTA
2153
2154                                [2]
2155                                8.8e-05
2156                                ATGAAAAGCAGTGATTCACAG
2157                                  +++ ++++  + ++ ++++
21581351 TGGGATGGGAGGAGGGAAGGTCAGGAAGGAAGGAGAAAAGGCTGACAGTGATAGTAAGGTAGAGTGTGCCAGGAC
2159
2160
2161NM_172893
2162  ENSMUSG00000038507
2163  LENGTH = 2000  COMBINED P-VALUE = 1.14e-04  E-VALUE =        4
2164  DIAGRAM: 44_[3]_340_[2]_74_[3]_791_[3]_133_[3]_130_[8]_362
2165
2166                                                 [3]
2167                                                 4.0e-07
2168                                                 AGTGCCCTGGGCCTTTAAGAG
2169                                                  +++++ +++++ ++++++++
21701    ATGTATATAGACACTCAGCCTCCAAAGTAGCTCCAAAGCCTCATTATACTTTGGTTTTTTAAAAGGACAGAGAAA
2171
2172                                   [2]
2173                                   9.7e-05
2174                                   ATGAAAAGCAGTGATTCACAG
2175                                     +++++    +++++++ ++
2176376  CAAAGAACAGAGGGGGTTGTAAGTGCAAGAGGGGAAATTGAGGATTCAAACTGCCATCAAGGGACAGGAGTCCAG
2177
2178                                                       [3]
2179                                                       7.3e-06
2180                                                       AGTGCCCTGGGCCTTTAAGAG
2181                                                        +++++  ++++++ ++++ +
2182451  TGATTCTAATGCAGTCCTGTCCCTATTCACAACAGACAAGGCAAGGCAGGTATGCCTGGGGTCTATAAATGAAGA
2183
2184                                          [3]
2185                                          1.5e-05
2186                                          AGTGCCCTGGGCCTTTAAGAG
2187                                          ++ +++++ +++ + ++++ +
21881276 ATTGGGTCCAAAACAGGAATCCCTCATCAGTGAGATTAACACCCTTGTTTAATAAAGGGTCTGGGATAGTCTCCT
2189
2190                                              [3]
2191                                              6.1e-05
2192                                              AGTGCCCTGGGCCTTTAAGAG
2193                                              ++++++  + ++++ + ++++
21941426 CTTGATTTTGAACTTCCTAGTCTCCAAAACCTTGAACAATAAATACCTAGTGTCCATTAAAGCCACTCCGTTTAT
2195
2196                                               [8]
2197                                               1.4e-06
2198                                               AACTTCAAAATGTCTCTTTGA
2199                                                ++++++ + +++++++++
22001576 TCTTAAAAACAGACATCAAAAAAATAAACTCCAGTCTTCATCTACTTCAGATTGTCTTTTTATTTCCATACTCTC
2201
2202
2203NM_133867
2204  ENSMUSG00000040600
2205  LENGTH = 2000  COMBINED P-VALUE = 1.16e-04  E-VALUE =      4.1
2206  DIAGRAM: 769_[3]_282_[2]_761_[4]_123
2207
2208
2209                        [3]
2210                        4.0e-07
2211                        AGTGCCCTGGGCCTTTAAGAG
2212                        ++++  ++ +++++++++++
2213751  AAACCCAGCCTGAGAATGGAATATGATTGGCCTTTAAGAATAAATAAACAAATTAAGGCTATTCAAACCTGAAAG
2214
2215                           [2]
2216                           4.4e-06
2217                           ATGAAAAGCAGTGATTCACAG
2218                             ++++++++ ++++ ++  +
22191051 ACATCATCTCTCACTTGGTCCTGAGGAAGCCAAGGACACATTCCTGACTGCAGGCTATAGTTATATGATCTGTGG
2220
2221                                                           [4]
2222                                                           1.3e-05
2223                                                           AGGAGAGAGCTCACACCTCTC
2224                                                            + +++++ ++  +++++ ++
22251801 GCCACACCTGAGGTCAGAGGCCAACAAGGAAGAAGCTGGAGAGCAGGGGTCTCGGGTAAAGCTCTGGCACCTGTC
2226
2227
2228
2229     CC
2230     ++
22311876 AGCACAGACACTTCCTCAGGTCCACTACCGTGCTGTGCGGTTGGTGGCCTGAAAGGCCTCTCCACCCTCTAGAGT
2232
2233
2234NM_027877
2235  ENSMUSG00000024906
2236  LENGTH = 2000  COMBINED P-VALUE = 1.17e-04  E-VALUE =      4.1
2237  DIAGRAM: 114_[8]_370_[2]_57_[8]_1295_[4]_78
2238
2239
2240                                            [8]
2241                                            9.1e-05
2242                                            AACTTCAAAATGTCTCTTTGA
2243                                            +++    ++ ++++++++++
224476   AAAAATGACCTGAATATAATTCTCTACTTTCTTTATCCCAGAAATTAAGTGGTTTTTTGTTCTTTATGGTTCCTG
2245
2246                                                            [2]
2247                                                            2.4e-06
2248                                                            ATGAAAAGCAGTGATTCACA
2249                                                            + ++ ++++++++ + ++++
2250451  CAGAGGCAGGCGGATTTCTGAGTGCGAGGCAAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACA
2251
2252                                                               [8]
2253                                                               7.9e-07
2254     G                                                         AACTTCAAAATGTCTCT
2255     +                                                         ++++++ + ++++++++
2256526  GAGAAACCCTGTCTTGAAAAATCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTTCTTTATGTTTCT
2257
2258
2259
2260     TTGA
2261     ++++
2262601  TTTACGATACAGGAAAAGGAATACTTCAATTTAATTCCAGAGTTGATAGGTTTATGATCATTTTAGCACAAAGAC
2263
2264                             [4]
2265                             4.9e-05
2266                             AGGAGAGAGCTCACACCTCTCCC
2267                             ++ +++ + ++++++    ++ +
22681876 GCGCTGTCCTCCTTTTTAACAGTCAGTACACAAAAAAAAAGAGTCTGCTCTCGAATTTTTGGGTGAGAGGAAAGG
2269
2270
2271NM_011937
2272  ENSMUSG00000024437
2273  LENGTH = 2000  COMBINED P-VALUE = 1.19e-04  E-VALUE =      4.2
2274  DIAGRAM: 418_[4]_623_[4]_913
2275
2276
2277                                                [4]
2278                                                8.3e-05
2279                                                AGGAGAGAGCTCACACCTCTCCC
2280                                                ++  ++++++++ + +++ +++
2281376  CATGATGGGCACTATGGTGACATGCAGCCTGGCACTGGGCAGTAGTTGAGAGCTACAGCCTGACCTGCNNNNNNN
2282
2283                   [4]
2284                   1.1e-09
2285                   AGGAGAGAGCTCACACCTCTCCC
2286                   ++++++++++++ ++++++++++
22871051 AAGGTAGGTGAGAAAGGACAGAGATACAACTTCACAGTGTACCCCAACATATGGGGCCATTCTTAATCAATGGGA
2288
2289
2290NM_024993
2291  ENSG00000176204
2292  LENGTH = 2000  COMBINED P-VALUE = 1.19e-04  E-VALUE =      4.2
2293  DIAGRAM: 98_[3]_552_[8]_192_[3]_111_[4]_961
2294
2295
2296                            [3]
2297                            6.4e-06
2298                            AGTGCCCTGGGCCTTTAAGAG
2299                             + + +++++++++++++++
230076   AAAAGTCTTAGAACCCCAGTTCTCAAATCCTGGTTCTTTAAGAATGTTTCTTTCTTCTTGGTGATTCTTAAACAT
2301
2302                                                                            [8]
2303                                                                            3.1e
2304                                                                            AACT
2305                                                                              ++
2306601  ATATGCTATCAAAGAGCAATTATATTTTCCAACTGTTAACTAGCATTAGAAAGGGCAACATCTTTAATTACTCAT
2307
2308
2309     -06
2310     TCAAAATGTCTCTTTGA
2311     + +++++++++++++ +
2312676  TAAAACTGTCTTTTGAAAGAGTGATCATCTAAAATCAGATACTAAAACATTATATTGCCAGAATTTAACCTCTCT
2313
2314                                                                [3]
2315                                                                5.3e-05
2316                                                                AGTGCCCTGGGCCTTT
2317                                                                + ++ ++++ ++++ +
2318826  CAATTTACATCCAGCATTACTTATTGACAAGTTTGAAATTTGTGACTATTTGTCTGCTCACTAACATGATCCTGT
2319
2320
2321
2322     AAGAG
2323     +++ +
2324901  AAGTGATCTTTTAAATTAAATAATCAGAAACCGGGTCCAAATTTATTCTTATAAAAACAAAAATAATATAACATG
2325
2326                                              [4]
2327                                              1.1e-05
2328                                              AGGAGAGAGCTCACACCTCTCCC
2329                                                  ++++ ++++++++++++ +
2330976  GAAGGTACACCTTTATTTGAGGCTGTTACAGAAAGGGAGGATACCCAGAACTCAAACCTCTCTCCTTTTATTTAT
2331
2332
2333NM_002578
2334  ENSG00000077264
2335  LENGTH = 2000  COMBINED P-VALUE = 1.20e-04  E-VALUE =      4.3
2336  DIAGRAM: 434_[2]_359_[2]_704_[3]_440
2337
2338
2339                                                                [2]
2340                                                                7.8e-05
2341                                                                ATGAAAAGCAGTGATT
2342                                                                  ++++++++ ++++
2343376  CATGATGTAACTTAGAGTGCATTACTGAGAGTAATAAACATACTATAACCACTAAAGGGCCGGAAAGCATTGATA
2344
2345
2346
2347     CACAG
2348      + +
2349451  GATAATTTTTCAGCACAACAGTTAATGAGTAGACCCCTGTTTTTGTTTTTATTGTTCTTAGGTTTGTTCATAGTA
2350
2351                                                                     [2]
2352                                                                     2.5e-05
2353                                                                     ATGAAAAGCAG
2354                                                                     ++++++++++
2355751  TGGAGACAGAAACATTCCCTTGGGGAGTTCATGCTTTTCCAGTTTACTTTATCCTCCCAGGGGAATGAAAACCAA
2356
2357
2358
2359     TGATTCACAG
2360       ++ + +++
2361826  ATATACTCAGATGTAGACACAAGATACTAAAGAATAATGAACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
2362
2363                                            [3]
2364                                            1.1e-08
2365                                            AGTGCCCTGGGCCTTTAAGAG
2366                                            + ++ +++++++++++++++
23671501 ACACCAAGGACATCTCGATGTTAAAGCAGCTAACAAGTCATTGTTATGGGCCATTAAAAATCAACAGCCAAACCT
2368
2369
2370NM_021763
2371  ENSRNOG00000010533
2372  LENGTH = 2000  COMBINED P-VALUE = 1.21e-04  E-VALUE =      4.3
2373  DIAGRAM: 788_[2]_130_[2]_361_[2]_173_[4]_462
2374
2375
2376                                           [2]
2377                                           2.5e-05
2378                                           ATGAAAAGCAGTGATTCACAG
2379                                           + +++++ ++ +++++ + ++
2380751  GAGACTGCATGTGTTCAGCGCCTGAGAGATTCAGACTGAGAAGAAACAATGACTTAGAGGATGGCAGAGTAAGAG
2381
2382                                            [2]
2383                                            5.9e-08
2384                                            ATGAAAAGCAGTGATTCACAG
2385                                            +++++++++  ++++++++++
2386901  TTGAGGCCAGGGCAAGTGGATACTGCAGCAGCCACTTTAATAAGAAGACAGGATTCACACAGAGGCACACTCGGA
2387
2388                                                   [2]
2389                                                   1.5e-05
2390                                                   ATGAAAAGCAGTGATTCACAG
2391                                                   ++++++ ++++++ + ++++
23921276 AAGATTACATCACTGAGGAACCACAGTAGACACGCCAACCACATACATAAGACCAAGTGCTGCACAAGTAACCCA
2393
2394                    [4]
2395                    8.0e-06
2396                    AGGAGAGAGCTCACACCTCTCCC
2397                    ++++++ + ++++++ + +++++
23981501 AGGTGTGGTTTTATGAGGACAAAAAAAAAATCCCTCCGTTACAGAGGAATTGCGTCATCTGTAGGAGTTTCTTCA
2399
2400
2401NM_016957
2402  ENSMUSG00000051601
2403  LENGTH = 2000  COMBINED P-VALUE = 1.23e-04  E-VALUE =      4.4
2404  DIAGRAM: 421_[8]_591_[3]_430_[8]_473_[8]_1
2405
2406
2407                                                   [8]
2408                                                   2.4e-06
2409                                                   AACTTCAAAATGTCTCTTTGA
2410                                                   ++++++++ ++++ ++ +++
2411376  TATCTCACTTAGGGTGATATTCTCAAGATCCATCCATTTGCCTGCAAAATTCATGATGTATTGTTGTTTTGTTTT
2412
2413                                                               [3]
2414                                                               3.1e-08
2415                                                               AGTGCCCTGGGCCTTTA
2416                                                               ++++++ ++  ++++++
2417976  TGACCACAGTGTAAGACCTATCTCAGAGTTGTTTTGATTTGCTTTTCCCTGATGACTAAGTACTTTGAATCTTTA
2418
2419
2420
2421     AGAG
2422     ++ +
24231051 AGTGCTTCTTGGCCATTCAAGATTCCTATCTTGTGAATTCTCTGTTTAGCTCTCTGCCCCATTTTTAAAATTGGG
2424
2425                                                                [8]
2426                                                                3.8e-05
2427                                                                AACTTCAAAATGTCTC
2428                                                                 ++++ + ++++ +++
24291426 ATTTATTAATTTGAGACCTCTCAAATTTTTGGATGTAGACACTTAACCATTAATCTTGCCACTTAAGACTGCCTT
2430
2431
2432
2433     TTTGA
2434       +++
24351501 CATTATGTCCCATAGATTTTGGTATGTTCTGGTTTTATTTTCATTCATTTCTAGGACTTTTAACATTTCATTCTT
2436
2437                                 [8]
2438                                 1.3e-05
2439                                 AACTTCAAAATGTCTCTTTGA
2440                                  ++++ +   + ++++++++
24411951 TATGGCTGATTTTGGAGAAAAATGTGTGTGCTTTAGTGTTTTTTTTTTTT
2442
2443
2444NM_172499
2445  ENSMUSG00000041945
2446  LENGTH = 2000  COMBINED P-VALUE = 1.24e-04  E-VALUE =      4.4
2447  DIAGRAM: 686_[3]_176_[3]_34_[8]_806_[4]_212
2448
2449
2450                [3]
2451                3.3e-05
2452                AGTGCCCTGGGCCTTTAAGAG
2453                ++++++++++++ +   ++
2454676  TTAAAAAATAAAGTGCTATGGTTTTAAGAATACAAACATGGCTTTGATAAGCATTTGAAAGAAAAGTCCACTGTC
2455
2456                                                               [3]
2457                                                               7.7e-08
2458                                                               AGTGCCCTGGGCCTTTA
2459                                                                +++++ ++++++++++
2460826  CTCTCTGAGGCTCATCTCCGTGACATTCAGATGCTGTGTGAGGACATGGCACTGGTGCCATGCTTTGGTCCTTTA
2461
2462                                           [8]
2463                                           8.6e-06
2464     AGAG                                  AACTTCAAAATGTCTCTTTGA
2465     ++++                                  +++++ +++ ++  ++  ++
2466901  AGAGTTCTTAGCGCCTGTGTTAAATTCACAGTGGAAACAACTTAAAAGTGAATTGGTTTTCTCACAGCCAGAGAG
2467
2468                                             [4]
2469                                             6.9e-05
2470                                             AGGAGAGAGCTCACACCTCTCCC
2471                                             +++ + ++  + ++ ++++++++
24721726 CTGCCTTTCCCTAAGAGCAAATGTTAACTCTACTGTGCCCAGGTGGGAAGAGAAGCCTCTCAGGCAAGCTTCTGA
2473
2474
2475NM_021470
2476  ENSMUSG00000029130
2477  LENGTH = 2000  COMBINED P-VALUE = 1.38e-04  E-VALUE =      4.9
2478  DIAGRAM: 621_[4]_380_[8]_256_[2]_244_[4]_411
2479
2480
2481                          [4]
2482                          4.2e-05
2483                          AGGAGAGAGCTCACACCTCTCCC
2484                          ++++++   ++  +++++ + +
2485601  AAAATAAGAAGCCCATAACTCAGGACAATAAAGCAACTTGTTAAAATTCAGACATCCAAAGAGTTAAATGTAGGT
2486
2487                                                      [8]
2488                                                      2.5e-07
2489                                                      AACTTCAAAATGTCTCTTTGA
2490                                                      +++++ ++++++ +++++++
2491976  TTAAGTGGAGTTTAAAATTATATTGTTCCAGAGACTTATCATGTGTACCAGATTTATAATGACTTTTGGGACTTC
2492
2493                               [2]
2494                               5.3e-06
2495                               ATGAAAAGCAGTGATTCACAG
2496                                +++++++++ ++ ++++ ++
24971276 AGCGCGGGGATGCAGACTTAAGAGGGGTAGGAGGCAATGTCTCAGAGTGCAGAAGGCCAGGAGCCGCAAGGACAC
2498
2499                                                                       [4]
2500                                                                       5.5e-05
2501                                                                       AGGAGAGAG
2502                                                                       +++ ++ ++
25031501 AGGGCGGATGGCGACGCCACACAGCTCGCAAAACAGTCGAGGGGCCGTTATCAAGTCTTTCGACTGAGGGGACAG
2504
2505
2506
2507     CTCACACCTCTCCC
2508     ++++++ + +++ +
25091576 CAAAAAGCGCACTCCAAAGAGCCGCACGGGTCAGCGCATCCTCGGGACGCATCACGCAGCCTGGCTGGAGGGCAG
2510
2511
2512NM_177001
2513  ENSMUSG00000047433
2514  LENGTH = 2000  COMBINED P-VALUE = 1.39e-04  E-VALUE =      4.9
2515  DIAGRAM: 548_[2]_1093_[3]_317
2516
2517
2518                            [2]
2519                            7.3e-08
2520                            ATGAAAAGCAGTGATTCACAG
2521                            + ++++++++ +++ ++++++
2522526  CACAGATGAAGAAACTGAGAGCCAGAAAAAGAAATGAGTCACACAACTAGAGACAAACCCAGTCACTTAGAAACT
2523
2524                 [3]
2525                 4.7e-06
2526                 AGTGCCCTGGGCCTTTAAGAG
2527                 ++ +++++++++++++ +  +
25281651 AAAAAAACTAACAACACTCTGGTCCCTTCATTGAAGCCAGGGATAACTGCAGAAACTCTCATCTTGGAACACCCA
2529
2530
2531NM_021836
2532  ENSRNOG00000003678
2533  LENGTH = 2000  COMBINED P-VALUE = 1.39e-04  E-VALUE =      4.9
2534  DIAGRAM: 1433_[4]_61_[8]_462
2535
2536
2537             [4]
2538             9.4e-07
2539             AGGAGAGAGCTCACACCTCTCCC
2540             ++++++++ +++ ++ ++  +++
25411426 TACCCGAAAGGAGAGAACTACAAACTGCCCCGGGCTTGGGGCAGCCCAATCTTCTCCCTCCATCCGCCCAGCTTG
2542
2543                      [8]
2544                      3.6e-07
2545                      AACTTCAAAATGTCTCTTTGA
2546                      +++++ ++++ + +++++++
25471501 GAAGAAAGAGACCACAGAAATTAATAAAGACTTTTTTTTTACTTAAATAGATTCAATAAAAAGTCAAACACACAC
2548
2549
2550NM_011167
2551  ENSMUSG00000021345
2552  LENGTH = 2000  COMBINED P-VALUE = 1.43e-04  E-VALUE =      5.1
2553  DIAGRAM: 175_[2]_314_[3]_577_[4]_584_[3]_160_[3]_83
2554
2555
2556                              [2]
2557                              4.1e-05
2558                              ATGAAAAGCAGTGATTCACAG
2559                                +++++ ++++++  ++++
2560151  AAGGGACAGCACATGCTGGTAAGGATGGGAAATAAGGGAAACACATCTCCATTAATGGTGGAAGTACAAACCTGT
2561
2562                                                                 [3]
2563                                                                 1.5e-05
2564                                                                 AGTGCCCTGGGCCTT
2565                                                                 +  ++++++ ++++
2566451  ATTCTAATATTAAAAACAGACATCCTGAATTTTGCAGGCAAATGGATGGAACTTGATAATATCACCCTGAGTCAG
2567
2568
2569
2570     TAAGAG
2571     + ++ +
2572526  TTAGTGCAGACACAAAAATAAATGCATTGTATGCAATCACTTTTAATTGGACATTATACATAACGTGTAGGATAA
2573
2574                                                               [4]
2575                                                               4.8e-06
2576                                                               AGGAGAGAGCTCACACC
2577                                                                + +++++++ ++++++
25781051 ACAAAAGATTGAGGGAATATCCAACCAATGCTTTGCCCAACTTGAAACCTATCCTATTGGAAAAGAGCCAACACC
2579
2580
2581
2582     TCTCCC
2583     + ++++
25841126 TGACACTATTAATGATATTCTGCTATGCTTTCAGACAGGAGCCTGAGAAACTGCATCCAGCAGATGACAGAAATA
2585
2586                                                                      [3]
2587                                                                      2.9e-05
2588                                                                      AGTGCCCTGG
2589                                                                      ++++ + +
25901651 AAGGTTATAGTTGGACTTATGACACATACTGAAGAGATCATCACTAACTGATATTTGCATCCTAAAATAATTTTA
2591
2592
2593
2594     GCCTTTAAGAG
2595     ++ +++++++
25961726 TTTTTTAAAAATCAAGTTTTGGGGTATCTCAGACATGAATACAGTGTATTTTTATCATCTCTAGTCTTTGCCTCC
2597
2598                          [3]
2599                          5.4e-07
2600                          AGTGCCCTGGGCCTTTAAGAG
2601                          ++++ +++++   ++++++++
26021876 TGGTTTCCAAAGGACAGCCTGAATGTTATGGAGTATTAAAAGTTTTATAATTCTGATTAGGATACATGTATCAGC
2603
2604
2605NM_020610
2606  ENSMUSG00000031019
2607  LENGTH = 2000  COMBINED P-VALUE = 1.48e-04  E-VALUE =      5.2
2608  DIAGRAM: 1245_[4]_285_[2]_29_[3]_376
2609
2610
2611                                                  [4]
2612                                                  9.6e-05
2613                                                  AGGAGAGAGCTCACACCTCTCCC
2614                                                  +++ ++ + ++++ ++++  +++
26151201 TGGATTGATTAATAAAAAGCAAATTCTTGGAAGAAGCAGAGAAATAGGCCACAAATAAGACCTGGCAGTGTCAAA
2616
2617                                                          [2]
2618                                                          7.3e-07
2619                                                          ATGAAAAGCAGTGATTCACAG
2620                                                          + ++++++++ + +++ + ++
26211501 CACATGCGCACACGCTTCAGGCTGCAATTATGCTTCTGAAGTGCTGAAATGAGAAAGAAACAAATAATTGATAGC
2622
2623                                 [3]
2624                                 1.2e-05
2625                                 AGTGCCCTGGGCCTTTAAGAG
2626                                 + ++ + +++++ ++ +++ +
26271576 AAATTCAAAGGAGTTAATCTGAAGGCAAATTAACTTGGGTTTTAAAATGTCTCATGTATACATCTATAATCCTAG
2628
2629
2630NM_026838
2631  ENSMUSG00000031253
2632  LENGTH = 2000  COMBINED P-VALUE = 1.49e-04  E-VALUE =      5.3
2633  DIAGRAM: 8_[2]_55_[3]_1012_[3]_538_[2]_45_[2]_106_[8]_110
2634
2635             [2]
2636             2.5e-06
2637             ATGAAAAGCAGTGATTCACAG
2638             + ++ ++++++++ + +++++
26391    TGAGTTCCAGGACAGCAAGGGCTACACAGAGAAACCGTGCCTTGGAAAAAACAAACAAACAAACAAGCAGCAACA
2640
2641              [3]
2642              1.0e-05
2643              AGTGCCCTGGGCCTTTAAGAG
2644              ++ ++++++ ++++++ + +
264576   ACAACAATAAAAACCCTGATTCTTTCACAATTGTATAGAGATCTTAAAATTTTTCCTGTTACACACATATATTAT
2646
2647                                                                        [3]
2648                                                                        4.1e-05
2649                                                                        AGTGCCCT
2650                                                                        + ++ +
26511051 TGAATAGCCCTCCATCCAAGACAGCTGAAAAACAGCTTAGCAATAAATATCACCTTGCCATGGATAGATTATTTA
2652
2653
2654
2655     GGGCCTTTAAGAG
2656     + ++ +++ ++++
26571126 GATTTATTTAAAGAACCTTTCAGAAAAGCCTCCCTAGGCATGCTTTCCTTCCATTCATAGTATGGGAAATTAATC
2658
2659                               [2]
2660                               7.2e-06
2661                               ATGAAAAGCAGTGATTCACAG
2662                               +++++++++++++ + + +++
26631651 TTTCAATCCCGATGTCATGCTGAGTCATAAAAAGCAGTGTTCCTCAGAAGTCCTCTCTGGAGGTCCTATGCTAGT
2664
2665                      [2]
2666                      5.9e-05
2667                      ATGAAAAGCAGTGATTCACAG
2668                       + ++++++++++++   +++
26691726 CATCACTCCACCCAGAGCTTGAAACCAGTGACAGTCACACTTCCCCTCTTCTGCAGCAGACAGCACTAGCTCCTC
2670
2671                                                                          [8]
2672                                                                          5.2e-0
2673                                                                          AACTTC
2674                                                                          +++++
26751801 TAATCCTCTTGCTTCCCCCTCCCCCAACCATTTCTTGGGGAATAACAAATATAGCTTTGGGGATAATATAGCTTT
2676
2677
2678     6
2679     AAAATGTCTCTTTGA
2680     ++ + + +++++++
26811876 AAGACGACTTTTGGCAAATGTAAATGTCCTAACATCTGGGCAGTGTTACCAGAATCCCGGAGGCCCTGACAGACC
2682
2683
2684NM_153270
2685  ENSG00000185915
2686  LENGTH = 2000  COMBINED P-VALUE = 1.50e-04  E-VALUE =      5.3
2687  DIAGRAM: 38_[8]_66_[4]_175_[3]_1026_[8]_609
2688
2689                                           [8]
2690                                           4.2e-07
2691                                           AACTTCAAAATGTCTCTTTGA
2692                                           +++++ ++++++++ + ++++
26931    TCCTTTACTATTCTATATCCTAAAATCTACTTCTAATCAGCTTTATACTGTTGCCTGTACAGCTCAGTGAATGTA
2694
2695                                                       [4]
2696                                                       4.6e-06
2697                                                       AGGAGAGAGCTCACACCTCTCCC
2698                                                       ++++++ ++ +++++++ +++++
269976   CTTTCATCTTTAAGAGTTCAGATATATGCCAGTGAATATTTTTGCTGTAGAGGAGAAAGTAAAAACTCCACAGCG
2700
2701                            [3]
2702                            2.1e-05
2703                            AGTGCCCTGGGCCTTTAAGAG
2704                            ++++ + +  ++ +++++++
2705301  GTATGGAATTTTGGGTCCAGTGTAATATTTTTATCATTTAAAAAGAACTCTATTTGTAAAAACATTTATTTACTG
2706
2707                         [8]
2708                         7.7e-05
2709                         AACTTCAAAATGTCTCTTTGA
2710                          ++++  + ++ ++++++++
27111351 CTTTCTAGATTAAAAAAAAGTGCTTAGAGATTTTTTTTTTCCTTCTCAGTTCCATATTTATATCAAACCATCAGA
2712
2713
2714NM_013255
2715  ENSG00000128585
2716  LENGTH = 2000  COMBINED P-VALUE = 1.51e-04  E-VALUE =      5.3
2717  DIAGRAM: 141_[3]_111_[8]_1249_[4]_122_[8]_81_[4]_187
2718
2719
2720                                                                       [3]
2721                                                                       1.0e-05
2722                                                                       AGTGCCCTG
2723                                                                       + ++ ++++
272476   GCCTCTGTTAAACAGTTTAGAAGGGTATTGAAAGTCACCAAAAGGATTTAAGCTTAAGAAGAACTAATTAACATG
2725
2726
2727
2728     GGCCTTTAAGAG
2729      ++ +++++++
2730151  TGTTTTTAAAAAAGATTGCTCAGGAACTATGTCTGGAAAAGAACAAGGACTTGACTTACATTAAGGTAAGAAGTG
2731
2732                                                     [8]
2733                                                     2.0e-05
2734                                                     AACTTCAAAATGTCTCTTTGA
2735                                                       +++ +++ +++++ ++++
2736226  GAATTATAAAATCTGGGGCCCAAAGGAATTGGAGTGAGTTAATTCCTCCCCTTTAAAGTGTCTATTTTCTTCAAA
2737
2738                                                [4]
2739                                                7.3e-05
2740                                                AGGAGAGAGCTCACACCTCTCCC
2741                                                ++++++++ ++  + ++ ++ ++
27421501 TGGAAGGCGGGGACAAGACATTTAAAACCAGGACCACTCCAGGAGGACAGCACATTAGCTACTGCCCTCCAGCTC
2743
2744                                           [8]
2745                                           2.1e-05
2746                                           AACTTCAAAATGTCTCTTTGA
2747                                           ++++ +++  +++++++ ++
27481651 TTCCAACTTGGTCTTCTTATTTTCCCTTCCTGCTCCATAACTACAACGTGTTTCTGTTCGTAATCATCTCGGCTT
2749
2750                                                                      [4]
2751                                                                      3.1e-07
2752                                                                      AGGAGAGAGC
2753                                                                       +++++++++
27541726 TTCCTTACCTCTGCTTGTAAGAAAAGTCCTTTGCGCCATTCCCCTCCAAGCCCCAGGGAAGGGCCTGGAAAGCGC
2755
2756
2757
2758     TCACACCTCTCCC
2759     + ++++++++ ++
27601801 TTACACCTCAGACCCAGTGTCGGTCAGCCGTCAAGGAGCGAGCGACGTGGGAAACCCTGAGATAGGACATTGGCC
2761
2762
2763NM_031817
2764  ENSRNOG00000015326
2765  LENGTH = 2000  COMBINED P-VALUE = 1.52e-04  E-VALUE =      5.4
2766  DIAGRAM: 72_[8]_1324_[8]_97_[2]_444
2767
2768                                                                             [8]
2769                                                                             9.0
2770                                                                             AAC
2771                                                                             +++
27721    TAATACCAATTTTTTTCTTTTTTTTCAGTTGCCAGATGTATACTTTGGGTTTTTGTTAAGGATTATTTTTTAAAA
2773
2774
2775     e-09
2776     TTCAAAATGTCTCTTTGA
2777     ++ +++ +++ +++++++
277876   TTAAAAGTGTATTTTGTAATTTAGAAGGAATTTAACAATTTTTAGACTTCAAAATTGAGAATTTTCACTTTTTAG
2779
2780                                                                        [8]
2781                                                                        7.9e-05
2782                                                                        AACTTCAA
2783                                                                        +++++ +
27841351 CATCTGCTAATTGTACCTTGTCTGAAACTTTACTGTGTGTTTTTGGATTCCTTGTACTGGCATACACAGATTTAC
2785
2786
2787
2788     AATGTCTCTTTGA
2789     + + ++++ +++
27901426 ATTTGTTCCTTTTTTTAATCACGAGTCCTGTGAAGCATAAGTAAAAGAATTCACACAACAGTTTGAATATTCACC
2791
2792                                        [2]
2793                                        3.1e-05
2794                                        ATGAAAAGCAGTGATTCACAG
2795                                        + +++ + +++++++ ++ +
27961501 TTAAAGCTTACTTAAAATACTTTTAAAATGAACTGAAGAACATAAGTGATACAGATGGGAGGAGGCTACAGCTCA
2797
2798
2799NM_172801
2800  ENSMUSG00000050201
2801  LENGTH = 2000  COMBINED P-VALUE = 1.56e-04  E-VALUE =      5.5
2802  DIAGRAM: 499_[3]_72_[2]_367_[8]_486_[2]_492
2803
2804
2805                                                      [3]
2806                                                      4.6e-05
2807                                                      AGTGCCCTGGGCCTTTAAGAG
2808                                                       +++ ++++++++++ ++++
2809451  AGTTGGAGATGATAATGTTTAAGTAAACATGCTCAAGGCAGCCCTTCAAGGTGGCATGGGTCATGAAAAAACAAC
2810
2811                                                                        [2]
2812                                                                        1.0e-05
2813                                                                        ATGAAAAG
2814                                                                        + ++ +++
2815526  ACTCAGGGAGTAGGGACAGGCAGGTCTCTGTGAGTTCAAGACCAGTCTGGTCTACAGTATGAGTTCCAGGATAGC
2816
2817
2818
2819     CAGTGATTCACAG
2820     ++ ++ + ++ ++
2821601  CAAGGCTACATAGTGAGATTCTGTCTAGTAAGTAGATGAGAATAAAATAATGTACCATAATAGAGAGAGAAAAGA
2822
2823          [8]
2824          9.3e-07
2825          AACTTCAAAATGTCTCTTTGA
2826           ++++ ++++++   + +++
2827976  NNNNGTACTTTAAAATGAAATCTTTCAAAATGAAAGAAAGAAAACTGCATTTCCTGTCTTTCCCAATAGCCAGCC
2828
2829                                                                   [2]
2830                                                                   2.4e-06
2831                                                                   ATGAAAAGCAGTG
2832                                                                   + ++ ++++++++
28331426 CTCGGGCGACAGGGGTGGGCAGATCTGTGTTCGAGGCCAGCCTGGCCTACCAAGCAAGTTCTAGGACAGCCAGGG
2834
2835
2836
2837     ATTCACAG
2838      + +++++
28391501 CTACACAGAGAAACCCTGTCTCAAAAAAACAATAACAAAAGTCAGATGATGGAGAAAATGTCCTCTAAGTAAGTC
2840
2841
2842NM_033072
2843  ENSMUSG00000025409
2844  LENGTH = 2000  COMBINED P-VALUE = 1.58e-04  E-VALUE =      5.6
2845  DIAGRAM: 460_[2]_458_[3]_190_[8]_399_[3]_409
2846
2847
2848               [2]
2849               2.4e-06
2850               ATGAAAAGCAGTGATTCACAG
2851               + ++ ++++++++ + +++++
2852451  ACAGAGTTCCAGGACAGCCAGGGCTACACAGATAAAGTCTCGAAAAAAGAGAGAGAGTTTCTTCTGGGTGTTCCT
2853
2854                                            [3]
2855                                            8.9e-05
2856                                            AGTGCCCTGGGCCTTTAAGAG
2857                                            + ++ +   + ++++++++ +
2858901  CCTCTAACGTCTGTCTCTGGCCGAGTCTAACACTGTACAACTGTCTCTGACCATTAAATGCTGTTGTACCGTGGA
2859
2860                              [8]
2861                              6.3e-06
2862                              AACTTCAAAATGTCTCTTTGA
2863                              +++++ + + ++++++   ++
28641126 GAGTTTCAAAATATTCTCATCTGTTAAATTAAGAGTGTCTCCCATAGAAAAGCAGTGGAGGCCCCACAGGGCAAG
2865
2866                                                                           [3]
2867                                                                           7.3e-
2868                                                                           AGTGC
2869                                                                           + +++
28701501 TCTGTGCTTTGAGCAACCTGAGCCAGAGGCAGAGGGGTGCTAGTGGGAATCGGGGAGATGCATGATGCTTATTGC
2871
2872
2873     06
2874     CCTGGGCCTTTAAGAG
2875     ++++  +++++ +  +
28761576 TCTGTACCTTTCACTGGGAAGGAGGGCAGCAGCCAACAGTAGCTCACAGGTTTGTAAACTGAGCCTGCTAGCTTT
2877
2878
2879NM_177229
2880  ENSMUSG00000047113
2881  LENGTH = 2000  COMBINED P-VALUE = 1.60e-04  E-VALUE =      5.7
2882  DIAGRAM: 412_[2]_472_[8]_74_[4]_977
2883
2884
2885                                          [2]
2886                                          2.5e-06
2887                                          ATGAAAAGCAGTGATTCACAG
2888                                          + ++ ++++++++ + +++++
2889376  TGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGAACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAA
2890
2891          [8]
2892          8.9e-07
2893          AACTTCAAAATGTCTCTTTGA
2894           ++++ +++++++ ++  ++
2895901  ACGTCTGCTTTAAAATGTATTCAGGTAAGAAAATTTCTTAAGCCTCTTATCAAAGATATTAGCAATTAATACCTT
2896
2897                              [4]
2898                              3.0e-05
2899                              AGGAGAGAGCTCACACCTCTCCC
2900                                 ++++++++++++ +  ++ +
2901976  TATGGTAACTAAATTTCAGACTAACTTTACAGAGAACAAATCAGTCTCAGCATTGTCCTCTGAGGATTCTGGCAG
2902
2903
2904NM_026776
2905  ENSMUSG00000035120
2906  LENGTH = 2000  COMBINED P-VALUE = 1.61e-04  E-VALUE =      5.7
2907  DIAGRAM: 519_[4]_464_[2]_158_[3]_794
2908
2909
2910                                                                          [4]
2911                                                                          4.5e-0
2912                                                                          AGGAGA
2913                                                                           +++++
2914451  GTGTGTCTGAAGACAACTACAGTGTACTCACATATCTAAAATAGATATATCTTTAAAAAAAACAGACCATGGACA
2915
2916
2917     5
2918     GAGCTCACACCTCTCCC
2919      +++++++++ + + +
2920526  CAGCACACACATGTAATCTCAGTTCTCAGAAGGTTGAGGCAGTGGGATTAAAGGCTGAGCTCTGGGATAAAGGTG
2921
2922                                    [2]
2923                                    4.5e-06
2924                                    ATGAAAAGCAGTGATTCACAG
2925                                      ++++  +++++++++ +++
2926976  TTTGGAGCTATGAATTAAACATTGTGACAGAGAGAGATTAAGGGATTCTCACAATAATTCTTCAGGGAACAGAAA
2927
2928                                                                 [3]
2929                                                                 2.7e-07
2930                                                                 AGTGCCCTGGGCCTT
2931                                                                 ++++++++  +++++
29321126 TAAAGGTGAGCATCTCCTAGCAGCCCAAGGTCAGCCTTCTTTTCAATACACCTTTTGTTTAGTGCTCTTATCCCT
2933
2934
2935
2936     TAAGAG
2937     ++++ +
29381201 TAAATGGGTTCATATTGCATGTCAGGTCAGAAGACTCCCAAACTTGTATTTCTAGATCCAACAAGGCTCCCCTGA
2939
2940
2941NM_027279
2942  ENSMUSG00000041396
2943  LENGTH = 2000  COMBINED P-VALUE = 1.63e-04  E-VALUE =      5.8
2944  DIAGRAM: 60_[2]_237_[8]_1023_[4]_615
2945
2946                                                                 [2]
2947                                                                 2.4e-06
2948                                                                 ATGAAAAGCAGTGAT
2949                                                                 + ++ ++++++++ +
29501    GGAGTCAGAGGCAGGCGGATTTCTGAGTTCGAGGGCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCT
2951
2952
2953
2954     TCACAG
2955      +++++
295676   ACACAGAGAAACCCTGTCTTGAAAAAACAAAACAAACAAACAAACAAAAAAAGATTGATAAAAAGGTTCCTGTAA
2957
2958                       [8]
2959                       1.1e-05
2960                       AACTTCAAAATGTCTCTTTGA
2961                       ++ ++++ +++++ +++++ +
2962301  ATAGGGAACCTTGGAGACAAGTTCAGACTGTGTTTTTAAAATTAAGCCACATATAAAAGAGGGAGGTTTGGAGTT
2963
2964                 [4]
2965                 3.2e-06
2966                 AGGAGAGAGCTCACACCTCTCCC
2967                 + + ++++ +++ ++++ ++ ++
29681351 AGATGTGGTACCACGGAAGAACTACAACTACATCCTTCAGCTCTCACGCTTCATCCAGATACTGAGCACCAGCGC
2969
2970
2971NM_052828
2972  ENSG00000137394
2973  LENGTH = 2000  COMBINED P-VALUE = 1.72e-04  E-VALUE =      6.1
2974  DIAGRAM: 814_[2]_215_[8]_137_[4]_737_[2]_11
2975
2976
2977                                                                     [2]
2978                                                                     6.5e-05
2979                                                                     ATGAAAAGCAG
2980                                                                       ++ ++++ +
2981751  AAAGTGACAGCTAGCAATTTCTGCATCCCAGATGGAGTTAATGTCACCAAGAGAACTTGTACTAGGAGTAGGAGG
2982
2983
2984
2985     TGATTCACAG
2986      ++++ ++++
2987826  AGACTGACAGCCCCCAGGGTCTCTCCTCAGGAGAGAATTCAGTTATACTGAAGATGCCTTCCAGGCCCCCCTTGG
2988
2989     [8]
2990     5.9e-06
2991     AACTTCAAAATGTCTCTTTGA
2992     +++++++ ++ ++ ++  +++
29931051 AGATTCAGAAGGGATCCATGATGAATGTGTCATTAGTTGGCAAGAAGAGCAGACACAGAGAGAATCAGAGATGCA
2994
2995             [4]
2996             1.8e-05
2997             AGGAGAGAGCTCACACCTCTCCC
2998              ++++  +++ + +++++++ ++
29991201 CGCTTCTTTGGACTTCGAGCCCACTTCTTACCGGTAGGTCCTGGGCATACAACATACCACTNNNNNNNNNNNNNN
3000
3001                       [2]
3002                       3.0e-07
3003                       ATGAAAAGCAGTGATTCACAG
3004                         ++++++++++ +++ ++++
30051951 CAAGTAAAATTACCCTAGGGGAGAAGCAGGTACTGACAGACCAACATGAG
3006
3007
3008NM_153189
3009  ENSG00000106304
3010  LENGTH = 2000  COMBINED P-VALUE = 1.74e-04  E-VALUE =      6.2
3011  DIAGRAM: 352_[3]_1004_[8]_602
3012
3013
3014                                                         [3]
3015                                                         5.3e-09
3016                                                         AGTGCCCTGGGCCTTTAAGAG
3017                                                         + +++ ++++++ ++++++++
3018301  AAAATACTTGTAAATATTTTTGCTTTAGGAGAAAATATGTGCTTTCAGGGATATTACGCTGGTCTCTTAAAAGTT
3019
3020                                [8]
3021                                4.0e-05
3022                                AACTTCAAAATGTCTCTTTGA
3023                                + +++ +++ +++ +++ ++
30241351 AAGTTTGTTCTGGCAAACTATTTTCTAACATTAAAATTGTATTTGTTTCCACTTTTTATTTGAGAAACAGTATGA
3025
3026
3027NM_003117
3028  ENSG00000106304
3029  LENGTH = 2000  COMBINED P-VALUE = 1.74e-04  E-VALUE =      6.2
3030  DIAGRAM: 352_[3]_1004_[8]_602
3031
3032
3033                                                         [3]
3034                                                         5.3e-09
3035                                                         AGTGCCCTGGGCCTTTAAGAG
3036                                                         + +++ ++++++ ++++++++
3037301  AAAATACTTGTAAATATTTTTGCTTTAGGAGAAAATATGTGCTTTCAGGGATATTACGCTGGTCTCTTAAAAGTT
3038
3039                                [8]
3040                                4.0e-05
3041                                AACTTCAAAATGTCTCTTTGA
3042                                + +++ +++ +++ +++ ++
30431351 AAGTTTGTTCTGGCAAACTATTTTCTAACATTAAAATTGTATTTGTTTCCACTTTTTATTTGAGAAACAGTATGA
3044
3045
3046NM_004490
3047  ENSG00000115290
3048  LENGTH = 2000  COMBINED P-VALUE = 1.74e-04  E-VALUE =      6.2
3049  DIAGRAM: 677_[3]_153_[3]_257_[2]_576_[8]_253
3050
3051
3052       [3]
3053       2.3e-05
3054       AGTGCCCTGGGCCTTTAAGAG
3055       +++++++ ++++++++  +++
3056676  GAAATACTCAGGGCCATTCTGAGAGGTTGAAAAAGGCAAGTGTGTTTACTCATGCTGTTCTACTTAGAAGTCCTG
3057
3058                               [3]
3059                               2.4e-05
3060                               AGTGCCCTGGGCCTTTAAGAG
3061                               ++++   +   +++++++++
3062826  TAGCAATTAGGCTTGCATTAGCTAAAAGTAAGTTAAATCTTTAAAAATTCAATAAATAATTCTTTTTCAGTTATT
3063
3064         [2]
3065         1.3e-06
3066         ATGAAAAGCAGTGATTCACAG
3067         ++++++++++  ++ ++++++
30681126 AAAAATGGGAACAAAAGAATCACAGAATCTAAAAACTATTCCCAGATGGTCTCGAAGAAGTGATAAGGAAGGTTA
3069
3070      [8]
3071      3.6e-06
3072      AACTTCAAAATGTCTCTTTGA
3073       ++++++++++ ++++++ +
30741726 ATAATTCAAAATAGTTTTTAGTTTCATTAACAGGTTGTGGATAGTTTCTTTTAATTGATAAGTTATTATCATATT
3075
3076
3077NM_153784
3078  ENSMUSG00000043782
3079  LENGTH = 2000  COMBINED P-VALUE = 1.78e-04  E-VALUE =      6.3
3080  DIAGRAM: 120_[8]_1007_[2]_521_[8]_134_[3]_134
3081
3082
3083                                                  [8]
3084                                                  3.0e-05
3085                                                  AACTTCAAAATGTCTCTTTGA
3086                                                   +++++ ++++  +++++++
308776   CTCCCAAATGCTGGGATTAAAGGTGTACGCTGCCACCACCTGGCCTACTTCCTACTTCCTTTTTTTTTTTTTTTT
3088
3089                            [2]
3090                            5.0e-06
3091                            ATGAAAAGCAGTGATTCACAG
3092                            ++++++ ++ ++ ++ +++++
30931126 AATTTGAGGCCATCCTGTGACACATGAGACCCTGTCACACACACATCCCAAAAATGGCACCGCACACATTCACTG
3094
3095                                             [8]
3096                                             2.9e-05
3097                                             AACTTCAAAATGTCTCTTTGA
3098                                              +++  ++++ ++++++ +++
30991651 TAGATGCTGCTTCCTTAGGGTGTTACAAAAGAAAAAAAATTACTATAAAAGGGCTTTCTTAGTGGAGGGCTTACC
3100
3101                                                  [3]
3102                                                  4.6e-07
3103                                                  AGTGCCCTGGGCCTTTAAGAG
3104                                                  ++ +  ++++ ++++++++++
31051801 GTAGATCTGCACATAGTAGGTGTTCAATTAATGTTCCCAGTAAGAAGCAAGATGGATCTTTAAGAGGATGGATGT
3106
3107
3108NM_011741
3109  ENSMUSG00000037327
3110  LENGTH = 2000  COMBINED P-VALUE = 1.81e-04  E-VALUE =      6.4
3111  DIAGRAM: 1899_[2]_80
3112
3113
3114                             [2]
3115                             9.6e-10
3116                             ATGAAAAGCAGTGATTCACAG
3117                             + +++++++++++++++++++
31181876 GAGTTCAATCCCCACGTCCCACAAAGGAAAGGAAGTGACTCACACAAACTGTCTTCTCAGGACACGCAAGTGGCA
3119
3120
3121NM_002192
3122  ENSG00000122641
3123  LENGTH = 2000  COMBINED P-VALUE = 1.86e-04  E-VALUE =      6.6
3124  DIAGRAM: 28_[4]_183_[3]_96_[8]_1046_[4]_202_[8]_126_[8]_147_[2]_21
3125
3126                                 [4]
3127                                 1.4e-05
3128                                 AGGAGAGAGCTCACACCTCTCCC
3129                                 ++++++++ +++ +++++ +
31301    ATAGTATACCAACTTAGTATATTTTTCAAGGAGAGCTAAACCACCTTTTGTAATGTTTGGTTTCTCACTGTTATC
3131
3132              [3]
3133              4.7e-06
3134              AGTGCCCTGGGCCTTTAAGAG
3135              ++ +++++++ + ++ +++++
3136226  TGTAAAAATAGGGCTCTGGATTTTCAAAAGCACATACATGAATAATTTATTAGCTATTCCAGGCAAGCTAAGTAC
3137
3138                                                        [8]
3139                                                        7.0e-05
3140                                                        AACTTCAAAATGTCTCTTTGA
3141                                                        +++   ++  ++++++++++
3142301  TAGAATAAACTAGATAAAAACTTGGCTTTAAGCATGTACTTTGATATTTATAAAACAAAGGTGTTTTTTTTTCAT
3143
3144                                                                         [4]
3145                                                                         5.2e-05
3146                                                                         AGGAGAG
3147                                                                         ++  +++
31481351 NNNNNNNNNNNNNNNNNNNNNNNNNNGCTATTTTGTGTGCTGTAGCAGTTCTTTTATAGCTCACATTAAGTGCAG
3149
3150
3151
3152     AGCTCACACCTCTCCC
3153     + ++ +++++ +++++
31541426 CTCTTAAACCCCACCCCCACCCCCAACCAAAGAAAATACTTGTTAAATAAGGATTAGACAGGTCAAACACCATTG
3155
3156                                                                         [8]
3157                                                                         6.1e-05
3158                                                                         AACTTCA
3159                                                                          ++   +
31601576 ATGGACAAACATATTCCTTTCAAGTATCTCTCCTTGAAGAAAATAAAAATTAATCAGATTACTTCCAATACAAAA
3161
3162
3163
3164     AAATGTCTCTTTGA
3165     ++ + ++++++++
31661651 AAGTCTCTCTTTTTGTTCTCTCTCAGGTAAACAGTTTCAAACCTATTAGGTTGCATAGTTCTAAGATCATAAGCA
3167
3168                                                                      [8]
3169                                                                      4.9e-05
3170                                                                      AACTTCAAAA
3171                                                                      ++ ++  +++
31721726 CCTTAACGAAATGTAACTTGGTATTCTTTTTTCCTTGATCTTTCATTCTTTCCATACTTGTTCTCAATTTTTTAA
3173
3174
3175
3176     TGTCTCTTTGA
3177     ++++ +++++
31781801 TGTTGTTTGTTTTGTTTTGTTGCAAAAGTGGTACAGAAAAAGGAAGTGTGACCACCTGCACACGATTGTTCTTTT
3179
3180             [2]
3181             5.7e-06
3182             ATGAAAAGCAGTGATTCACAG
3183             + +++ + +++++ + +++++
31841951 TGATATACACAGAGATAAGTGTCACACAGACATACCTTATGACCTGGGTA
3185
3186
3187NM_031249
3188  ENSMUSG00000050614
3189  LENGTH = 2000  COMBINED P-VALUE = 1.86e-04  E-VALUE =      6.6
3190  DIAGRAM: 502_[8]_158_[4]_247_[2]_97_[3]_473_[8]_72_[4]_321
3191
3192
3193                                                         [8]
3194                                                         1.2e-05
3195                                                         AACTTCAAAATGTCTCTTTGA
3196                                                          ++++ ++  ++  + +++++
3197451  GGATGTCCTGGAAGTATCCCAAGTGCTAGGATTAAAGATGAGCCGCCATGCCTAATTTATGGTGAATGTTTTATT
3198
3199           [4]
3200           1.8e-05
3201           AGGAGAGAGCTCACACCTCTCCC
3202            + +++ ++++ +++++ ++ ++
3203676  CAAATTTGAAGACAGCTTAAACTACATACACAGTGAATTTTTCAGGCCAACCTGGGCTGTAGAAGGGCCCTGTAT
3204
3205                                                        [2]
3206                                                        3.6e-06
3207                                                        ATGAAAAGCAGTGATTCACAG
3208                                                        + ++ ++++++++ + +++++
3209901  GTAGGTGGATCTCTTGAGTTCAACGCCAGCCTCATCTACAGACTAAGTTCTAGGGCAGCCAGGGCTACACAGACA
3210
3211                        [3]
3212                        2.4e-05
3213                        AGTGCCCTGGGCCTTTAAGAG
3214                        + ++   + +++++++ +++
32151051 CCAAGTTAAAACAGTGAAAATTATGTTTGGTCATTTAAAATAAAATGGCAGTATTTAAAGTACAAAACTGGCAAG
3216
3217                                                                    [8]
3218                                                                    4.2e-05
3219                                                                    AACTTCAAAATG
3220                                                                     ++++  ++++
32211501 TTTAATGTTGTTAAGCTATTTTAAGGGATAAATAACAATATTTTTACCTCATAATATTGGATATAATTTTAAATA
3222
3223
3224
3225     TCTCTTTGA
3226     +++++ +++
32271576 TTTCTATTATCCTACACTAAACGAAAGCTGTGAAAACACATTAAGCCTTAAATCAGCTTCCGGCTTGCGGTTTCC
3228
3229           [4]
3230           4.4e-05
3231           AGGAGAGAGCTCACACCTCTCCC
3232            ++++ ++ ++ +++ +   +++
32331651 CGCCGGTGGAACGCAATGAAAACAGCCCCGAGTGTGTGGAAACACAGACGCTGCCGGTTACCCCATGGAAGCCCG
3234
3235
3236NM_016704
3237  ENSMUSG00000022181
3238  LENGTH = 2000  COMBINED P-VALUE = 1.87e-04  E-VALUE =      6.6
3239  DIAGRAM: 587_[8]_93_[3]_219_[2]_432_[4]_583
3240
3241
3242                                                                   [8]
3243                                                                   8.2e-05
3244                                                                   AACTTCAAAATGT
3245                                                                   +++++++ + +++
3246526  AGATTCTGCTGAAAGAATACCCTGATATAGCTGTCTCTTGTGAGGCTATGCCAGTTCCTGGCAAATTCAGAGTGG
3247
3248
3249
3250     CTCTTTGA
3251      +  +
3252601  ATGCTCACAGTCGTCTATAGGATGGAACACAGGGTCCCCAATGGAGGAGCTAGAGAAAGCACCCAAGGAGCTGAA
3253
3254                               [3]
3255                               1.0e-05
3256                               AGTGCCCTGGGCCTTTAAGAG
3257                               ++ ++++++  + + + ++
3258676  GGGGTCTGCAACCCTATAGGTGAAACAACACTATGAACTAATCAGTACCCCCAGAGCTCGTGTCTCTAGCTGCAT
3259
3260                                              [2]
3261                                              3.4e-07
3262                                              ATGAAAAGCAGTGATTCACAG
3263                                              + ++++++++ ++ + +++++
3264901  TTGGAATAGCATTTGAAATGTAAATGAAGAAAATATCTAATAAAAAAGGAAATGGCACACAGGCTGATAGTGTCA
3265
3266                                                 [4]
3267                                                 6.9e-05
3268                                                 AGGAGAGAGCTCACACCTCTCCC
3269                                                 ++++++++ ++++++    +++
32701351 GGATTTTCTTGGCAGAATCACTTGGTTTTGAATCTATTGTCACTAGGAGAGAAAAAAAATGGTTCCTAACTGAAT
3271
3272
3273NM_146140
3274  ENSMUSG00000044528
3275  LENGTH = 2000  COMBINED P-VALUE = 1.88e-04  E-VALUE =      6.7
3276  DIAGRAM: 443_[2]_103_[3]_254_[8]_99_[3]_23_[8]_386_[4]_98_[4]_443
3277
3278
3279                                                                         [2]
3280                                                                         1.3e-05
3281                                                                         ATGAAAA
3282                                                                         + + +++
3283376  AACCCCCATACCAGGCTGGAGGAATCACCCCAGTAAGAGGAGGAAAAAAGGCCCCAGAACTGAACATCAGATGAG
3284
3285
3286
3287     GCAGTGATTCACAG
3288      ++ ++++ +++ +
3289451  TCAATGACACACCCACTCCCATTGTTAGGAGTCCCACAAAAACCCCAAGCCAAACCACCATAGCAAGTATGGGGA
3290
3291                                               [3]
3292                                               9.4e-05
3293                                               AGTGCCCTGGGCCTTTAAGAG
3294                                                   +++++ +++++++ +++
3295526  TGAGGGAATGCAGATCCATGTATTCCCTGTGATTGGCGCTCATTCTCTCTGAGTCCTTAGGAGCCCAGCTTAGTT
3296
3297                      [8]
3298                      2.3e-05
3299                      AACTTCAAAATGTCTCTTTGA
3300                      ++++++++ +++ +++ + +
3301826  CCGTATTTTCCTCTGGAAAATTCAAGATGCCTTCTATTGATACAATCTCCAAGCTAAATAAACAAGGTTCTATTT
3302
3303                                                                   [3]
3304                                                                   1.3e-05
3305                                                                   AGTGCCCTGGGCC
3306                                                                   ++ +++ ++ +++
3307901  ATACTGCGCTATGCTATGTAGCGAACTGAAGGATGACGATAAATCTCAGCACTCTAACGATAAACGCTTTGTTTC
3308
3309                                    [8]
3310                                    4.9e-05
3311     TTTAAGAG                       AACTTCAAAATGTCTCTTTGA
3312     +++ +++                        ++++ ++++++ + +  +++
3313976  TTTTAAAAGGGCCTGTAGCGTTATTCGTCTGAACTGCATACTTTATACTTTCACCCATCATTCCTCTCCGTAAGG
3314
3315                                                                    [4]
3316                                                                    9.1e-05
3317                                                                    AGGAGAGAGCTC
3318                                                                    +  ++++++++
33191351 TTCTGAAACTGCTTCTTTGCATTGGTGTTGCCAGGTCTGACTGATTTAACATAGAGACAGCACAATACAGCGCTG
3320
3321
3322
3323     ACACCTCTCCC
3324     + + + +++ +
33251426 AGAATACTCTGGTTCCACTCAGGATTTAAATCGTGGCTACTGATATTTATTAGACCTGTGGTGATAATAATGGCA
3326
3327                                       [4]
3328                                       4.4e-06
3329                                       AGGAGAGAGCTCACACCTCTCCC
3330                                       ++++++++++++ +     ++++
33311501 GGCATGGTGTGTCACAAAGAGGTGGGTGGGGAAAAGGAGAGAGAAACAGAGAGACAGAGGCAAAGACAAAAAACA
3332
3333
3334NM_026856
3335  ENSMUSG00000049606
3336  LENGTH = 2000  COMBINED P-VALUE = 1.93e-04  E-VALUE =      6.8
3337  DIAGRAM: 397_[3]_368_[8]_269_[2]_170_[4]_199_[2]_457_[2]_12
3338
3339
3340                           [3]
3341                           6.5e-05
3342                           AGTGCCCTGGGCCTTTAAGAG
3343                           ++++  +++++++++  ++
3344376  GTTTAGACATAGTACTACCCAGAGTGGGCTGGGCCCTCTAATATTAATCAATAAGACGCCCCCAGACCAATCTGA
3345
3346                                         [8]
3347                                         4.9e-07
3348                                         AACTTCAAAATGTCTCTTTGA
3349                                         +++ +++ + ++++++ +++
3350751  TCAACACAAGCCTATACCCAACATTATAAATACTGAAAACTCAGAGTGTTTCCTTTTTGAACCAGGAGCGAGGCA
3351
3352                               [2]
3353                               4.0e-05
3354                               ATGAAAAGCAGTGATTCACAG
3355                               ++++++++++ +++   ++ +
33561051 AAGAGATGGTTCCTAAAAAGTAAATAATGGAAGGAAAGGAGATACGGAGGAAAAGAGGGGAGGAGAGGTGGGGGT
3357
3358                                                                        [4]
3359                                                                        2.9e-05
3360                                                                        AGGAGAGA
3361                                                                        ++++++ +
33621201 TTAATTCTGAACTATGTGGCTATACTAATTCTTCCTGCATTCCTATACATTGATAGCTGTCATGATTAGGAAAAA
3363
3364
3365
3366     GCTCACACCTCTCCC
3367      ++++++  +++ +
33681276 AAAAAAAAGTCATAATTAAATCTAAGAGGCTCTAAAAATTCCAAGTCTTCCAACTAGGAATCCTGTCAATTTTTT
3369
3370                                                                     [2]
3371                                                                     5.7e-05
3372                                                                     ATGAAAAGCAG
3373                                                                     + +++++ +++
33741426 GCACACTGGTGTAGTCAGTCTCAGAAGGGCTTGAAATGGAGGATTCTGAGTTCAAAGCCAGCCCAGGGAAATCAG
3375
3376
3377
3378     TGATTCACAG
3379     +++  + + +
33801501 TGAGACCCTCCCCAAACAAACAGAGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCA
3381
3382                      [2]
3383                      2.2e-05
3384                      ATGAAAAGCAGTGATTCACAG
3385                      + ++ +++++ ++ ++++++
33861951 TTTCCCATGAAATAAAAAAAATAACAAATGTTTCACATTAGAGGCACTGT
3387
3388
3389NM_153572
3390  ENSMUSG00000041298
3391  LENGTH = 2000  COMBINED P-VALUE = 1.94e-04  E-VALUE =      6.9
3392  DIAGRAM: 97_[2]_458_[4]_196_[3]_861_[8]_102_[4]_156_[8]
3393
3394
3395                           [2]
3396                           1.4e-05
3397                           ATGAAAAGCAGTGATTCACAG
3398                           +++++++++++ + +++ +++
339976   ATAAATAAAAGCAAGTTTGTTCATGGAAGGAAGAGTCTCTCAGTCTAATTTTAAAATTAGTCCCATTACAAATGT
3400
3401                                                        [4]
3402                                                        9.6e-05
3403                                                        AGGAGAGAGCTCACACCTCTCCC
3404                                                         ++ ++ +++ +++++++ ++++
3405526  AGACCTTGGTAGTGAGCTTCAGGATCAAGCTAACAGCTCAGTGGGGGAGAGGGGTAAACGACAAAACCTGTCAGT
3406
3407                                                  [3]
3408                                                  9.7e-06
3409                                                  AGTGCCCTGGGCCTTTAAGAG
3410                                                   ++++++ + ++ ++++++++
3411751  ATTTATAGGTTTTAGTAAGAAAAAGGGGTCAAATATCTTAAGCAACATACTAGGAGTTTTTAAAAGTGCCTCTAA
3412
3413                                [8]
3414                                7.2e-05
3415                                AACTTCAAAATGTCTCTTTGA
3416                                +++++ ++++  + ++  +++
34171651 ACTCTAACAGGAAGTATTAGATTCTAGAGATTTAAAAATTATTCCTGAAGAACTTGTGATCATTCCACTCAAAGT
3418
3419     [4]
3420     8.2e-06
3421     AGGAGAGAGCTCACACCTCTCCC
3422      + +++++++++ + +++++ ++
34231801 TGCACAGAGCTACCCCTTCAGCCCGGGCCACTGGCTCTCTTATTCTGTACACAAGTATGAGGTTTGGTAGCCTGG
3424
3425                                  [8]
3426                                  1.7e-05
3427                                  AACTTCAAAATGTCTCTTTGA
3428                                  ++++++ + ++ ++++++++
34291951 GGCCTTCAAGTGAAGATTCCTCTGATTAAAACTTCCAGATTTTTTTTTTT
3430
3431
3432NM_024251
3433  ENSMUSG00000030051
3434  LENGTH = 2000  COMBINED P-VALUE = 2.14e-04  E-VALUE =      7.6
3435  DIAGRAM: 73_[2]_64_[4]_508_[8]_658_[4]_609
3436
3437                                                                              [2
3438                                                                              2.
3439                                                                              AT
3440
34411    TTTCAACATCCTTGAATTTATACTGAGTGGAAGGGTTAAAGGACCCCTTAAAGATTGAGTCAGTGCAGGATGGGA
3442
3443     ]
3444     8e-08
3445     GAAAAGCAGTGATTCACAG
3446     +++++ ++ ++++++++++
344776   AGAAGTCAAGGACTCACAGGTTCACCAACCCCTCCACAATAGAAGGTGTGAGTGTTAATCTTGCTTTGTCACTTG
3448
3449             [4]
3450             6.9e-05
3451             AGGAGAGAGCTCACACCTCTCCC
3452              ++ +  +++++++++++ + ++
3453151  ACTGGACCTGGGGTTAGCTAAAACCTGTGCCTCTGGGCAGGGCTGTGAGGGTGTTTCCCTGAAGGACGGACTTGG
3454
3455                   [8]
3456                   4.6e-05
3457                   AACTTCAAAATGTCTCTTTGA
3458                   + +++ ++ ++++++++ ++
3459676  CTGATAATAGAGAAATATTTATTCTGTCTTTCTTCAGTTTAAGTAAATTTAACCCTGTGCAATTACATGGAGAGA
3460
3461                       [4]
3462                       3.7e-05
3463                       AGGAGAGAGCTCACACCTCTCCC
3464                       +   ++++++++ ++++++++++
34651351 GAGGCCAGAACCCTATCCACAGCAGAGAACGCACCTCTCAGGTGACCCTCTGAGAAGACAGTGGCTTGAAGCTTC
3466
3467
3468NM_176831
3469  ENSMUSG00000009768
3470  LENGTH = 2000  COMBINED P-VALUE = 2.15e-04  E-VALUE =      7.6
3471  DIAGRAM: 44_[8]_733_[3]_368_[2]_99_[8]_672
3472
3473                                                 [8]
3474                                                 7.9e-07
3475                                                 AACTTCAAAATGTCTCTTTGA
3476                                                 ++++++++++++ ++++ +++
34771    CTCTATGCAAAAAAACCCTCGCTTGAGAGCTGCAAAATACACTCAGATTCAAACTGCCTCTGTGATTTGTTTCTG
3478
3479                                                     [3]
3480                                                     3.9e-05
3481                                                     AGTGCCCTGGGCCTTTAAGAG
3482                                                     +++++++  +++++++++++
3483751  CACTTACGTGCAATGTTGCTCTCTGTTACCTGGTCAACCGTAGCCTGAAATACCAAAGTTCATTAAAACGATCCA
3484
3485                                                                   [2]
3486                                                                   2.3e-06
3487                                                                   ATGAAAAGCAGTG
3488                                                                   + ++ ++++++++
34891126 TCGAGAAGCAGAGACGGGAGGCTCTCCGAGTTCCAAGCTACTCTGGTATAAAGAGGAAGTTCAGGACAGCCAGGG
3490
3491
3492
3493     ATTCACAG
3494     ++ ++ ++
34951201 ATACAAAGAGAAACCTTGTCTCGAGACAACAAAACAAAACAACAGAAAGTCTAAGTTCTTGACTTGATACAATTT
3496
3497                                     [8]
3498                                     7.7e-05
3499                                     AACTTCAAAATGTCTCTTTGA
3500                                     ++++   ++++++ +++ ++
35011276 TAAAGTTGTATGTTGAGTTCACACAAGTTTTTAAATATTTACTGTATCTGTTTTGTATGTGTGTACACATGCAGA
3502
3503
3504NM_172599
3505  ENSMUSG00000037526
3506  LENGTH = 2000  COMBINED P-VALUE = 2.22e-04  E-VALUE =      7.9
3507  DIAGRAM: 1166_[2]_279_[8]_391_[8]_101
3508
3509
3510                                              [2]
3511                                              2.4e-06
3512                                              ATGAAAAGCAGTGATTCACAG
3513                                              + ++ ++++++++ + +++++
35141126 TTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCT
3515
3516                                              [8]
3517                                              2.9e-05
3518                                              AACTTCAAAATGTCTCTTTGA
3519                                              ++ + +++++ ++ ++ ++++
35201426 TCCATATCACCTGGAAGCTACTGCTGCCTGTCGGAGAGATTAGTTACAAAAAGGATTCTTGAGAGCTTGCCGACT
3521
3522        [8]
3523        2.7e-07
3524        AACTTCAAAATGTCTCTTTGA
3525          +++ +++++++ ++ ++++
35261876 ACATTCTTTAAAATGTATCCTTTAATTTCTATGAAGTACTCCAGGTTAGCTTGCACTTTTGCTGCTACCATCAAT
3527
3528
3529NM_028539
3530  ENSMUSG00000048409
3531  LENGTH = 2000  COMBINED P-VALUE = 2.30e-04  E-VALUE =      8.1
3532  DIAGRAM: 226_[4]_1039_[2]_60_[8]_182_[8]_407
3533
3534
3535      [4]
3536      5.2e-06
3537      AGGAGAGAGCTCACACCTCTCCC
3538       +++++ + +++ + ++  ++ +
3539226  GTGGAGAAAACTACAGCTAGTCTCGAGTATGACCAGGGGATGTGTGATTCTCTGACTTTAACATGAATTTGGAAA
3540
3541                  [2]
3542                  2.4e-06
3543                  ATGAAAAGCAGTGATTCACAG
3544                  + ++ ++++++++ + +++++
35451276 CTCTATGAGTTTCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTTGACCCCCCATCTTCCCCCCCAAAAAGG
3546
3547                        [8]
3548                        7.9e-05
3549                        AACTTCAAAATGTCTCTTTGA
3550                         +  +  +++++++++ ++++
35511351 TGAAACTAAAAATTTCATCTGTCTTCAAATGGTTCCTTTAAAACTGCACTCAGGAAACAGGCATCAGGGCATATG
3552
3553                                                                             [8]
3554                                                                             7.0
3555                                                                             AAC
3556                                                                              ++
35571501 CTCTGAAAACAGATAAAGGTGAGTCTGTGTGCTTGGAATGTAGTTCAGTTGGTAGACTGCTTGCCTAGCTTATAA
3558
3559
3560     e-06
3561     TTCAAAATGTCTCTTTGA
3562     ++ ++ ++ +++++++++
35631576 TTAATCCTAGCTCTTGGAAAGCAGGAGCAGGAGGACCAGAAGTTTGACAGTATCTTCAGCCAGTGGGAGATCTAG
3564
3565
3566NM_025781
3567  ENSMUSG00000031953
3568  LENGTH = 2000  COMBINED P-VALUE = 2.35e-04  E-VALUE =      8.3
3569  DIAGRAM: 55_[2]_61_[8]_123_[8]_23_[4]_823_[2]_624_[3]_163
3570
3571                                                            [2]
3572                                                            9.4e-06
3573                                                            ATGAAAAGCAGTGATTCACA
3574                                                            + +  +++++ ++++ ++ +
35751    GAGAAAGGAAGACTGCCACAAATTCAAGGCCAGCCTGGGCTTCATGAAGAGATGGAGGCTAGCCAAGGATACATA
3576
3577                                                                   [8]
3578                                                                   7.0e-05
3579     G                                                             AACTTCAAAATGT
3580     +                                                              ++++ +++ +
358176   GCAAGACATTGCATCAAATGAAATCTAAAAACAAACAAACAAATCAAGGTTCCCAACGCAAAGAATTTAAAGTAA
3582
3583
3584
3585     CTCTTTGA
3586     ++++++
3587151  TTCTTTATTGATAATAAACATTTATACTAGCATTAGAAATGTCAGTAGAAAAATAATATTTAAATAAATCTCTAA
3588
3589                                                             [8]
3590                                                             1.0e-05
3591                                                             AACTTCAAAATGTCTCTTT
3592                                                             +++ + ++++++ ++++ +
3593226  TGTACAAAGATTTGATCATTTTGACTATAGCAGTTAAGTGCAATAACCTAATATAAAAAGTTAAACTGATTTTGG
3594
3595                              [4]
3596                              2.0e-05
3597     GA                       AGGAGAGAGCTCACACCTCTCCC
3598     +                        + ++++++ +++ ++ ++++++
3599301  TCATAACCAGCCCTACACAGTACACAAGAAAGAAATACAAGTTCACAAAACCTTCTGCGCGTGGACCATTAATGG
3600
3601                                                   [2]
3602                                                   4.3e-05
3603                                                   ATGAAAAGCAGTGATTCACAG
3604                                                   + ++++++++   ++ +++++
36051126 CAGAGAAACCTGTCTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGAAAAACCACACACACACACCCCCAAAA
3606
3607                     [3]
3608                     1.2e-05
3609                     AGTGCCCTGGGCCTTTAAGAG
3610                     ++ + + +++ + +++++++
36111801 GTGCAAGTGCCCACAGAGAGTCTTGGATATTTAAAAAGAAATTTTATTTATGTGTGACGTGAACAGCATGTAGAG
3612
3613
3614NM_174924
3615  ENSG00000169340
3616  LENGTH = 2000  COMBINED P-VALUE = 2.36e-04  E-VALUE =      8.4
3617  DIAGRAM: 779_[3]_64_[4]_957_[2]_135
3618
3619
3620                                  [3]
3621                                  1.4e-07
3622                                  AGTGCCCTGGGCCTTTAAGAG
3623                                  ++ +++++++++ ++++++++
3624751  AATTAGACAAGGTGATGTTGCAAGTGCTTAAGGCTATGGGTTTTTAAAAGATAGCCTCAGTGATTGCATGGAATA
3625
3626                                            [4]
3627                                            4.1e-05
3628                                            AGGAGAGAGCTCACACCTCTCCC
3629                                             ++ ++++ ++++ +++  + ++
3630826  TGGAGGGGTTTGGGATGGGGGCTGGGAGGGAGGCACAGAGGGGCAGCAAAAAGACCAGTTAGGAGACTTCAGCTG
3631
3632                                                 [2]
3633                                                 8.3e-06
3634                                                 ATGAAAAGCAGTGATTCACAG
3635                                                 +  +++++++ ++++ + +++
36361801 TTCTTCTAAGACTGCACCAACCAGGAAAAAGAGGTCATGAGTAAAACAGAGCCAAGGACACTCAGAGGCTTTATT
3637
3638
3639NM_007003
3640  ENSG00000101951
3641  LENGTH = 2000  COMBINED P-VALUE = 2.37e-04  E-VALUE =      8.4
3642  DIAGRAM: 311_[4]_68_[2]_1483_[4]_71
3643
3644
3645                [4]
3646                6.9e-05
3647                AGGAGAGAGCTCACACCTCTCCC
3648                ++++++ + ++ ++ +++  +++
3649301  GCACCAGGTGCAGGAGACCTATGACCCCTAGCACTGCCTTTTATCTGCTGGGTTCCCCTTGGAGAACCATATATC
3650
3651                                [2]
3652                                1.9e-05
3653                                ATGAAAAGCAGTGATTCACAG
3654                                + ++++++++ + ++ +  ++
3655376  TTTGGAGCCCCAGAACATGCTGGTTGCACAAGAACAAAGCACACTTACTGTCTGAGAGGAAGGCTGGTGGTGTGG
3656
3657                                    [4]
3658                                    1.4e-07
3659                                    AGGAGAGAGCTCACACCTCTCCC
3660                                     +++++++ +++ +++ + ++++
36611876 GGCACAGAGCCTCTAGGAGGCGGGAGAGGGCTGGAAAGACAACCCACGTGACACACCCCCGAGGTTTGGGATTGG
3662
3663
3664NM_028604
3665  ENSMUSG00000019792
3666  LENGTH = 2000  COMBINED P-VALUE = 2.39e-04  E-VALUE =      8.5
3667  DIAGRAM: 577_[8]_511_[3]_310_[4]_356_[4]_158
3668
3669
3670                                                         [8]
3671                                                         1.1e-06
3672                                                         AACTTCAAAATGTCTCTTTGA
3673                                                         +++ ++++++++++++ +++
3674526  GAGTTTTCTCAAAGCGGAAGAAGTAGAAGTCCTGAGTTACCTCCCAGAGCTGAACCTCAAACTGTTTTATTGCTC
3675
3676                                                                [3]
3677                                                                1.8e-06
3678                                                                AGTGCCCTGGGCCTTT
3679                                                                +  + + +++++ +++
36801051 GCTCTGTAACTTCTGTAGGAAGTAAAGGCTCGTTTTGTAGGTAACAAAGTTTGAGGGCAATCATTTTGGGTTTTT
3681
3682
3683
3684     AAGAG
3685      ++++
36861126 GAGAGTGGGTTTCTCTTCAGGTAGCTCTGTCTGTACTGGATATCTCTCTGTAGAGCAGGCTGGCTTCAAAGTCAA
3687
3688                    [4]
3689                    9.6e-05
3690                    AGGAGAGAGCTCACACCTCTCCC
3691                    +   ++++ ++ +++++++++++
36921426 GAACTTACTAATAAAAAATAAGAAAATAAACCTCACAGCTGATGCTCAAAAGATTTCAATTAATAATAATAAAAG
3693
3694                        [4]
3695                        8.3e-05
3696                        AGGAGAGAGCTCACACCTCTCCC
3697                        ++++++++++++  +  +  + +
36981801 AAATCAGGAGCACATGACAAGGAGAGCGCAACTAAATGCCTGACCTCTGCACAGCATTGGTCATTTGTGGCTCCT
3699
3700
3701NM_013166
3702  ENSRNOG00000012460
3703  LENGTH = 2000  COMBINED P-VALUE = 2.40e-04  E-VALUE =      8.5
3704  DIAGRAM: 605_[8]_749_[2]_604
3705
3706
3707          [8]
3708          2.0e-07
3709          AACTTCAAAATGTCTCTTTGA
3710            +++ + +++++++++++++
3711601  TGAGATTCTTAAGAATGTTTCTTGGATCAATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
3712
3713                              [2]
3714                              7.0e-06
3715                              ATGAAAAGCAGTGATTCACAG
3716                               +++++++++ ++++ +  ++
37171351 AAGGTCTCTTGGGTTTTAAAGATAAGTAAAAACAAATGATACTGACAAATTCTGGATTCACAGTGTACAGGCCTC
3718
3719
3720NM_153399
3721  ENSMUSG00000040566
3722  LENGTH = 2000  COMBINED P-VALUE = 2.41e-04  E-VALUE =      8.5
3723  DIAGRAM: 39_[2]_895_[4]_1022
3724
3725                                            [2]
3726                                            1.5e-06
3727                                            ATGAAAAGCAGTGATTCACAG
3728                                            + ++++++++ ++++  +  +
37291    NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGGGAAAGAAAGGATAGATTCTCTACCTCCCCCTTC
3730
3731                                                            [4]
3732                                                            7.6e-07
3733                                                            AGGAGAGAGCTCACACCTCT
3734                                                            ++++++++ +++++++++ +
3735901  CCAGGTGAAAGGGTTTGAGGATATTTGATTCCTTCCAAGCGTGAACCATTGGAGCAGGAAAGCACACACACTTGA
3736
3737
3738
3739     CCC
3740      +
3741976  GAAGAGTTGTCTATCTGACCCCAGCCCCCCTGTCTCTTCTGGGAATGTGCTCAGGGGAAGGCAGTGCAAGTGCTA
3742
3743
3744NM_173084
3745  ENSG00000175447
3746  LENGTH = 2000  COMBINED P-VALUE = 2.43e-04  E-VALUE =      8.6
3747  DIAGRAM: 201_[2]_643_[8]_634_[3]_459
3748
3749
3750                                                        [2]
3751                                                        1.7e-06
3752                                                        ATGAAAAGCAGTGATTCACAG
3753                                                        ++++++++++++ +++++ +
3754151  CATACATCAACTTTTGCAATCTTCCTGCTGGTAAAAATACAAAACAGCAGCATAAGAACCAGTTACTCATATACT
3755
3756                                             [8]
3757                                             2.7e-06
3758                                             AACTTCAAAATGTCTCTTTGA
3759                                              ++  ++ +++++++++++++
3760826  GTTTATGTGCAATCTGTAGGGCCAGGAGCATAGTCTAATCTGACCCAGAATGTCTTTTTGATTTGATATAGGTAA
3761
3762                         [3]
3763                         3.2e-05
3764                         AGTGCCCTGGGCCTTTAAGAG
3765                         +  + ++++ ++ + +++++
37661501 TTGCAGACCAAGTTACCAACATGATTCTGTTCTAATAAGAATGAGTTTTTAATCCAAGAACTGATTTGACTGACG
3767
3768
3769NM_009412
3770  ENSMUSG00000027506
3771  LENGTH = 2000  COMBINED P-VALUE = 2.44e-04  E-VALUE =      8.6
3772  DIAGRAM: 125_[8]_526_[2]_87_[2]_483_[8]_83_[4]_70_[8]_498
3773
3774
3775                                                       [8]
3776                                                       9.7e-05
3777                                                       AACTTCAAAATGTCTCTTTGA
3778                                                       +++++ ++ ++ ++++ ++++
377976   TTCTCCTTCTCTCCACTTAATCATTTTCCTCATATGAAATCTCTATACAAAACTTGAAGATTTCTTATTTAAAAA
3780
3781                                                                             [2]
3782                                                                             9.8
3783                                                                             ATG
3784                                                                             + +
3785601  CTCTGAAAAAGGCTTTAGGTCACTCCAAGCTTGGCAGTTAACATTTGGCATGGACACTGGTAAAACCACAATAGA
3786
3787
3788     e-07
3789     AAAAGCAGTGATTCACAG
3790     +++++++++ ++  + ++
3791676  GAAAGAAGTAACAGATACAACCTCATAGGCCATAAACATACACAGCAAAGGAAGCAGGAGTGAGTCAGGAGTGAC
3792
3793                                   [2]
3794                                   1.3e-05
3795                                   ATGAAAAGCAGTGATTCACAG
3796                                    ++++++++  ++++++++++
3797751  CACAGTTAACAGAGGGGCTTAGCAGAGCCACTGGGAAGCTTTGACTCACAGCCCCGACAGTTCTTAGAGTGGGAA
3798
3799              [8]
3800              5.6e-05
3801              AACTTCAAAATGTCTCTTTGA
3802              +++++ ++  +   +++++++
38031276 ATTTACCTGAAATTAAATTTTAATCTTGTAAAAAAATGTGTGAGAATGGTATAATAAATAACTGATAAGCATATT
3804
3805                                           [4]
3806                                           1.4e-05
3807                                           AGGAGAGAGCTCACACCTCTCCC
3808                                           +++ +++++++  + ++ +++ +
38091351 TGAGCTCAAATAGATGTAGCTACAAATGACAGTTACCAAGGCAAGAGCAGGACCCACACTCTCCCCACTGGAAGT
3810
3811                                                             [8]
3812                                                             1.2e-05
3813                                                             AACTTCAAAATGTCTCTTT
3814                                                              ++++ +  +++++ + ++
38151426 TTGAGTGTCTGCATGTTTTTAATTTACAGAACTATAGAACTGCATACACACCTGTCTACTTTAGTCTGGTGTCTT
3816
3817
3818
3819     GA
3820     ++
38211501 TAGAAACCCAAGATATGGTCCTCACAGAACTGTTTATCCGAGAAAAAAAATGTAGCTGGTAGTTTCTCCTTTGAA
3822
3823
3824NM_005565
3825  ENSG00000043462
3826  LENGTH = 2000  COMBINED P-VALUE = 2.62e-04  E-VALUE =      9.3
3827  DIAGRAM: 878_[8]_563_[2]_409_[8]_87
3828
3829
3830                                                          [8]
3831                                                          7.2e-05
3832                                                          AACTTCAAAATGTCTCTTTGA
3833                                                          +++ + ++++++   +++++
3834826  CAGTCATAGCCATGGAACAGAACATCTTAATCCTGATGGCACTTTCCACTAATAGACTTAAAATGAGCTTTGGTT
3835
3836                                          [2]
3837                                          3.9e-05
3838                                          ATGAAAAGCAGTGATTCACAG
3839                                            ++++++++ +++++  +++
38401426 TTGTGCAATAACAACCAAGGTCCCAAAGGGAAAAACTTGAAGAACAACTGATTGTCACTATTTGGCTGAATACCA
3841
3842                      [8]
3843                      1.1e-08
3844                      AACTTCAAAATGTCTCTTTGA
3845                      +++++ ++++++++++ +++
38461876 ACCAAAGTCTCATCCCTAAATTTAAAATGTTTTCTTTTGGTATTTGTAGTTTAAATTTTCTTTAAGACAAAAATA
3847
3848
3849NM_145514
3850  ENSMUSG00000038733
3851  LENGTH = 2000  COMBINED P-VALUE = 2.67e-04  E-VALUE =      9.4
3852  DIAGRAM: 314_[3]_436_[8]_635_[8]_521_[8]_10
3853
3854
3855                   [3]
3856                   1.9e-05
3857                   AGTGCCCTGGGCCTTTAAGAG
3858                   ++ +  ++++++ ++ ++++
3859301  TTCTCTGATTTTCTAAAGTGATGGTCTCTGAAAAATGAAGCTTAAAGGAATCTTTTCCATTACCCATTTGAATTA
3860
3861                          [8]
3862                          8.6e-05
3863                          AACTTCAAAATGTCTCTTTGA
3864                          ++++   ++ +  +++++++
3865751  ATGTTAGATATAGGGTCTTCAAAATGACAAGTCACTTTTTTTCCATAAAGGAAACATTCCCGTAAACTAAAAGGG
3866
3867       [8]
3868       2.1e-05
3869       AACTTCAAAATGTCTCTTTGA
3870        +++++ ++++ + +++++ +
38711426 AATACTTCTTAATTTATTTTTAAAAAATTGTGCTGTTAACCCTTTTACGGGGCAACAACTATGTGAAAAGTACAA
3872
3873                        [8]
3874                        5.6e-08
3875                        AACTTCAAAATGTCTCTTTGA
3876                         +++++++++++++++++++
38771951 AAATGTTTGGCCCCAATCGGGCTTCAAAATGGTTCTTTTTTTTTTTTTTT
3878
3879
3880NM_000319
3881  ENSG00000139197
3882  LENGTH = 2000  COMBINED P-VALUE = 2.68e-04  E-VALUE =      9.5
3883  DIAGRAM: 118_[2]_227_[3]_160_[8]_1250_[4]_159
3884
3885
3886                                                [2]
3887                                                2.2e-05
3888                                                ATGAAAAGCAGTGATTCACAG
3889                                                + +++ ++++ ++ + +++++
389076   GGGTGTAGAAGTGGGGCCTCTGAAAGAGGGCGAAAAGGCAAGGAAAAGGAGAAATGTTGCACAGTCTTATGGTCT
3891
3892                                                                       [3]
3893                                                                       3.9e-05
3894                                                                       AGTGCCCTG
3895                                                                       + ++++++
3896301  CCTGCTGCCTGCCTGCCTCCGCTCATGCACCCTGGGCTGGGATGGTACTTCTGTTCGTCTGGCATTATTGCCCTT
3897
3898
3899
3900     GGCCTTTAAGAG
3901     +++++++ +  +
3902376  GGTCATTTACCGGCAGCCCTGGGCCCCTCCTTGCTCTTCTCCATGACACTAGGACTCCCTTGGTCTTGAAGCTGG
3903
3904                           [8]
3905                           1.0e-05
3906                           AACTTCAAAATGTCTCTTTGA
3907                            ++++ +++   +++++++++
3908526  CTTGAGGCTTAGTCTTATTCCGTGATTAAAAGCATTTCTTGTATGTTTGTCCTTTCCCAGCCTGGAGTGATGGGA
3909
3910                       [4]
3911                       3.2e-06
3912                       AGGAGAGAGCTCACACCTCTCCC
3913                       +++++++++ ++  +++++ + +
39141801 GCCTTTGAGGGGGGCGGCAGGAGAGAGTACCGACCTCCCTCGAACTCCTGGCAGAGGTGGGGGTCGCAGCAAAAG
3915
3916
3917NM_139063
3918  ENSMUSG00000038982
3919  LENGTH = 2000  COMBINED P-VALUE = 2.71e-04  E-VALUE =      9.6
3920  DIAGRAM: 622_[4]_876_[4]_203_[2]_232
3921
3922
3923                           [4]
3924                           2.6e-08
3925                           AGGAGAGAGCTCACACCTCTCCC
3926                           ++++++++ ++ ++ +  +++++
3927601  GTCCCCAGAGTCCACATGGCAGAGGAGAGAACTGACTCGACTCCCACAAATTATCCTCTGATCTCCACACGTGTG
3928
3929                          [4]
3930                          1.9e-06
3931                          AGGAGAGAGCTCACACCTCTCCC
3932                           +++++++  + +++++++  ++
39331501 ACAAAACTGAGGACATTAACATGGAAAGCTTAGAAACTTCGTCCTGGTCCACACCCTTAGAAAGGCGTATGCTGT
3934
3935                           [2]
3936                           3.8e-05
3937                           ATGAAAAGCAGTGATTCACAG
3938                           + +++ +++ +++++ ++ ++
39391726 AGTGGTCACTAACGACATTCCAAAAAGTGCCTGTGATACAAAGGGGATTTTCACTTGCGGCTCCCTCCCCTCCCT
3940
3941
3942NM_009980
3943  ENSMUSG00000030970
3944  LENGTH = 2000  COMBINED P-VALUE = 2.78e-04  E-VALUE =      9.8
3945  DIAGRAM: 437_[3]_1109_[8]_62_[2]_308_[8]
3946
3947
3948                                                                   [3]
3949                                                                   9.4e-05
3950                                                                   AGTGCCCTGGGCC
3951                                                                    ++  + +++ +
3952376  CTGACCACACATAATTTGATAGGTACCCATTCTTCCCTGTGGGAAAGAATTAAAGAAGGCTCCATTTCTTGGACT
3953
3954
3955
3956     TTTAAGAG
3957     +++++++
3958451  CTTAAGATAGGAATGGGGCTTTCATTAGTTTCTCTAGCAGACTGCTGGCTGTGAAATGGCCAACCCCTTTGGGAA
3959
3960                                                                        [8]
3961                                                                        4.2e-05
3962                                                                        AACTTCAA
3963                                                                         + ++ ++
39641501 AAATACAGTAACGATAACTCACACTAAAACAAAACATTTCTGATAGCCATTATTTTTCTGTTTGGGACAGTTTAA
3965
3966
3967
3968     AATGTCTCTTTGA
3969     + + ++++++++
39701576 AGTTTTTTTTTTCTTTTGTGTCACAAAAACAGGAATGTACCTATACAAAGGCTCAAAATAGGCCATCTTTAAAAA
3971
3972     [2]
3973     1.6e-06
3974     ATGAAAAGCAGTGATTCACAG
3975       ++++++++ +++++++++
39761651 CAAAAAGGCAATGATTCACAAAAGACTATGAATAGAACATGTAACTAGCTGATACAAATCTAATAGGATTTGTTA
3977
3978                                  [8]
3979                                  4.9e-07
3980                                  AACTTCAAAATGTCTCTTTGA
3981                                  +++++ +++++ ++++ +++
39821951 AAATAGATTTGAGTACAAACAGCTTGTGAAACTTAATACTTTTTTCTTTT
3983
3984********************************************************************************
3985
3986
3987CPU: crick
3988Time 67.670000 secs.
3989
3990mast acro1.set.fasta.conserved.25.meme -m 2 -m 3 -m 4 -m 8 -text -brief -remcorr -norc -stdout -d /home/sao/applications/mask_db/upstream.masked -bfile /home/sao/proj_motif/model.bckg
3991