1// File Description 2/// \file SequenceInfo.inl 3/// \brief Inline implementations for the SequenceInfo class. 4// 5// Author: Derek Barnett 6 7#include "pbbam/SequenceInfo.h" 8 9namespace PacBio { 10namespace BAM { 11 12inline bool SequenceInfo::operator==(const SequenceInfo& other) const 13{ 14 return assemblyId_ == other.assemblyId_ && 15 checksum_ == other.checksum_ && 16 length_ == other.length_ && 17 name_ == other.name_ && 18 species_ == other.species_ && 19 uri_ == other.uri_ && 20 custom_ == other.custom_; 21} 22 23inline bool SequenceInfo::operator!=(const SequenceInfo& other) const 24{ return !(*this == other); } 25 26inline std::string SequenceInfo::AssemblyId() const 27{ return assemblyId_; } 28 29inline SequenceInfo& SequenceInfo::AssemblyId(std::string id) 30{ assemblyId_ = std::move(id); return *this; } 31 32inline std::string SequenceInfo::Checksum() const 33{ return checksum_; } 34 35inline SequenceInfo& SequenceInfo::Checksum(std::string checksum) 36{ checksum_ = std::move(checksum); return *this; } 37 38inline std::map<std::string, std::string> SequenceInfo::CustomTags() const 39{ return custom_; } 40 41inline SequenceInfo& SequenceInfo::CustomTags(std::map<std::string, std::string> custom) 42{ custom_ = std::move(custom); return *this; } 43 44inline std::string SequenceInfo::Length() const 45{ return length_; } 46 47inline SequenceInfo& SequenceInfo::Length(std::string length) 48{ length_ = std::move(length); return *this; } 49 50inline std::string SequenceInfo::Name() const 51{ return name_; } 52 53inline SequenceInfo& SequenceInfo::Name(std::string name) 54{ name_ = std::move(name); return *this; } 55 56inline std::string SequenceInfo::Species() const 57{ return species_; } 58 59inline SequenceInfo& SequenceInfo::Species(std::string species) 60{ species_ = std::move(species); return *this; } 61 62inline std::string SequenceInfo::ToSam(const SequenceInfo& seq) 63{ return seq.ToSam(); } 64 65inline std::string SequenceInfo::Uri() const 66{ return uri_; } 67 68inline SequenceInfo& SequenceInfo::Uri(std::string uri) 69{ uri_ = std::move(uri); return *this; } 70 71} // namespace BAM 72} // namespace PacBio 73