1SeqCons
2=======
3
4__OPTIONS____________________________________________________________________
5
6VERBOSITY              	NORMAL
7OPERATION              	realign only
8
9INPUT FILE             	alns1.sam
10OUTPUT READS           	alns1.realign.sam
11OUTPUT CONSENSUS       	alns1.realign.fa
12
13OVERLAP MIN LENGTH     	20
14OVERLAP MAX ERR-RATE   	5
15OVERLAP MIN COUNT      	3
16OVERLAP WINDOW SIZE    	20
17
18K-MER SIZE             	20
19K-MER MAX OCCURRENCES  	200
20
21REALIGNMENT BANDWIDTH  	10
22REALIGNMENT ENVIRONMENT	20
23
24__LOADING DATA_______________________________________________________________
25
26  Loading alignments from alns1.sam...OK
27
28__COMPUTATION________________________________________________________________
29
30Performing realignment... OK
31
32__WRITING RESULT_____________________________________________________________
33
34Writing consensus to alns1.realign.fa ... OK
35Writing alignments to alns1.realign.sam ... OK
36
37Overall time: 0.278916 s
38
39Done.  Have a nice day.
40