| .. | | 15-Mar-2021 | - |
| test/ | H | 15-Mar-2021 | - | 913 | 688 |
| .gitignore | H A D | 15-Mar-2021 | 6 | 2 | 1 |
| Makefile | H A D | 15-Mar-2021 | 3.5 KiB | 153 | 83 |
| align-local_ref_id.c | H A D | 15-Mar-2021 | 4.1 KiB | 144 | 100 |
| align-local_ref_start.c | H A D | 15-Mar-2021 | 4.2 KiB | 149 | 100 |
| align-ref-name.c | H A D | 15-Mar-2021 | 5.1 KiB | 192 | 130 |
| align-ref-pos.c | H A D | 15-Mar-2021 | 8.3 KiB | 300 | 222 |
| align-ref-seq-id.c | H A D | 15-Mar-2021 | 5.1 KiB | 189 | 128 |
| align-restore-read.c | H A D | 15-Mar-2021 | 5.4 KiB | 151 | 104 |
| cigar.c | H A D | 15-Mar-2021 | 80.2 KiB | 2,589 | 2,096 |
| generate-mismatch-qual.c | H A D | 15-Mar-2021 | 5.1 KiB | 153 | 98 |
| get-sam-flags.c | H A D | 15-Mar-2021 | 7.3 KiB | 229 | 137 |
| get_mate_align_ids.c | H A D | 15-Mar-2021 | 9.5 KiB | 333 | 256 |
| list.c | H A D | 15-Mar-2021 | 3 KiB | 92 | 59 |
| list.h | H A D | 15-Mar-2021 | 1.4 KiB | 38 | 9 |
| make-cmp-read_desc.c | H A D | 15-Mar-2021 | 5.9 KiB | 177 | 121 |
| mismatch-restore-qual.c | H A D | 15-Mar-2021 | 4.7 KiB | 136 | 88 |
| not-my-row.c | H A D | 15-Mar-2021 | 2.6 KiB | 77 | 46 |
| project_read_from_sequence.c | H A D | 15-Mar-2021 | 9.4 KiB | 286 | 218 |
| range-list.c | H A D | 15-Mar-2021 | 11.6 KiB | 401 | 304 |
| range-list.h | H A D | 15-Mar-2021 | 4.1 KiB | 122 | 22 |
| raw-restore-qual.c | H A D | 15-Mar-2021 | 3.2 KiB | 96 | 55 |
| raw-restore-read.c | H A D | 15-Mar-2021 | 3.6 KiB | 120 | 74 |
| ref-preserve_qual.c | H A D | 15-Mar-2021 | 12.7 KiB | 430 | 338 |
| ref-restore-read.c | H A D | 15-Mar-2021 | 5.2 KiB | 151 | 108 |
| ref-tbl-sub-select.c | H A D | 15-Mar-2021 | 20 KiB | 534 | 427 |
| ref-tbl.c | H A D | 15-Mar-2021 | 3.1 KiB | 107 | 66 |
| ref-tbl.h | H A D | 15-Mar-2021 | 1.4 KiB | 33 | 4 |
| refseq-stats.c | H A D | 15-Mar-2021 | 5.8 KiB | 206 | 159 |
| refseq.c | H A D | 15-Mar-2021 | 21.7 KiB | 676 | 569 |
| refseq.h | H A D | 15-Mar-2021 | 2.4 KiB | 69 | 31 |
| restore-read.c | H A D | 15-Mar-2021 | 17.3 KiB | 576 | 478 |
| restore-read.h | H A D | 15-Mar-2021 | 1.7 KiB | 39 | 9 |
| seq-construct-read.c | H A D | 15-Mar-2021 | 4.4 KiB | 126 | 72 |
| seq-restore-linkage-group.c | H A D | 15-Mar-2021 | 5.9 KiB | 187 | 133 |
| seq-restore-read.c | H A D | 15-Mar-2021 | 23.9 KiB | 752 | 568 |
| template-len.c | H A D | 15-Mar-2021 | 5.6 KiB | 137 | 99 |
| util.h | H A D | 15-Mar-2021 | 3.9 KiB | 116 | 78 |
| wgs.c | H A D | 15-Mar-2021 | 6.3 KiB | 236 | 178 |
| wgs.h | H A D | 15-Mar-2021 | 2.3 KiB | 61 | 30 |