1#! /bin/sh 2 3cd tests 4. ./compat.sh 5 6sort -k2,2 > ${pref}.md5sum <<EOF 772f1913b3503114c7df7a4dcc68ce867 ${pref}_m40_s16m.histo 872f1913b3503114c7df7a4dcc68ce867 ${pref}_automerge_m40_s1m.histo 972f1913b3503114c7df7a4dcc68ce867 ${pref}_m40_s1m_merged.histo 1072f1913b3503114c7df7a4dcc68ce867 ${pref}_m40_s1m_text.histo 11EOF 12 13FILES="seq1m_0.fa seq1m_1.fa seq1m_0.fa seq1m_2.fa seq1m_2.fa" 14echo $FILES | xargs $JF count -t $nCPUs -o ${pref}_m40_s16m.jf -s 4M -C -m 40 15$JF histo ${pref}_m40_s16m.jf > ${pref}_m40_s16m.histo 16 17ls | grep "^${pref}_m40_s1m[0-9].*" | xargs rm -f 18echo $FILES | xargs $JF count -t $nCPUs -o ${pref}_m40_s1m -s 1M --disk --no-merge -C -m 40 19$JF merge -o ${pref}_m40_s1m_merged.jf ${pref}_m40_s1m[0-9]* 20ls | grep "^${pref}_m40_s1m[0-9].*" | xargs rm -f 21 22echo $FILES | xargs $JF count -t $nCPUs -o ${pref}_automerge_m40_s1m.jf -s 1M --disk -C -m 40 23 24echo $FILES | xargs $JF count -t $nCPUs -o ${pref}_m40_s1m_text.jf -s 1M --text --disk -C -m 40 25 26$JF histo ${pref}_automerge_m40_s1m.jf > ${pref}_automerge_m40_s1m.histo 27$JF histo ${pref}_m40_s1m_merged.jf > ${pref}_m40_s1m_merged.histo 28$JF histo ${pref}_m40_s1m_text.jf > ${pref}_m40_s1m_text.histo 29 30check ${pref}.md5sum 31