1<multi-test> 2 <remove-temp-dir url="bwa_mem_1"/> 3 <create-temp-dir url="bwa_mem_1"/> 4 <load-document index="doc" url="bwa/index1/ecoli.fa" io="local_file" format="fasta"/> 5 <save-document doc="doc" url="bwa_mem_1/ecoli.fa" io="local_file" format="fasta"/> 6 <run-cmdline 7 task="!common_data_dir!bwa/bwa_mem_worker/bwa_mem_aligner.uwl" 8 reference="!tmp_data_dir!bwa_mem_1/ecoli.fa" 9 out-dir="!tmp_data_dir!bwa_mem_1" 10 reads_up="!common_data_dir!e_coli/e_coli_reads/bwa-mem/reads_1_us.fastq;e_coli/e_coli_reads/bwa-mem/reads_2_us.fastq" 11 reads_down="!common_data_dir!e_coli/e_coli_reads/bwa-mem/reads_1_ds.fastq;e_coli/e_coli_reads/bwa-mem/reads_2_ds.fastq" 12 /> 13 <compare-sam-by-length file1="bwa_mem_1/bwa/out.sam" file2="bwa/bwa_mem_worker/result.sam"/> 14 <remove-temp-dir url="bwa_mem_1"/> 15</multi-test>