1<!-- Single reads, two datasets --> 2<multi-test> 3 <remove-temp-dir url="bwa-mem4"/> 4 <create-temp-dir url="bwa-mem4"/> 5 <load-document index="doc" url="e_coli/e_coli_cut.fa" io="local_file" format="fasta"/> 6 <save-document doc="doc" url="bwa-mem4/e_coli_cut.fa" io="local_file" format="fasta"/> 7 <run-cmdline 8 task="!common_data_dir!bwa/workflow/bwa-mem.uwl" 9 ref="!tmp_data_dir!bwa-mem4/e_coli_cut.fa" 10 out_dir="!tmp_data_dir!bwa-mem4" 11 in="!common_data_dir!e_coli/e_coli_reads/e_coli_1_1.fastq;;e_coli/e_coli_reads/e_coli_1_2.fastq" 12 /> 13 <compare-sam-by-length file1="bwa-mem4/bwa/out.sam" file2="bwa/workflow/mem-single1_1.sam"/> 14 <compare-sam-by-length file1="bwa-mem4/bwa_1/out.sam" file2="bwa/workflow/mem-single1_2.sam"/> 15 <remove-temp-dir url="bwa-mem4"/> 16</multi-test> 17