1<multi-test> 2 <remove-temp-dir url="bwa-mem5"/> 3 <create-temp-dir url="bwa-mem5"/> 4 <run-cmdline 5 task="!common_data_dir!bwa/workflow/bwa-mem.uwl" 6 in="!common_data_dir!reads/e_coli_1000.fa" 7 out_dir="!tmp_data_dir!bwa-mem5" 8 ref="!common_data_dir!bwa/index/ecoli.fa.gb" 9 /> 10 <compare-sam-by-length file1="bwa-mem5/bwa/out.sam" file2="bwa/pattern/e_coli_1000_MEM.sam"/> 11 <remove-temp-dir url="bwa-mem5"/> 12</multi-test> 13