|
Name |
|
Date |
Size |
#Lines |
LOC |
| .. | | 09-May-2018 | - |
| cram/ | H | 09-May-2018 | - | 22,392 | 14,515 |
| htslib/ | H | 09-May-2018 | - | 7,636 | 3,022 |
| m4/ | H | 09-May-2018 | - | 209 | 195 |
| os/ | H | 09-May-2018 | - | 184 | 118 |
| test/ | H | 07-May-2022 | - | 28,448 | 26,828 |
| INSTALL | H A D | 09-May-2018 | 8 KiB | 203 | 151 |
| LICENSE | H A D | 09-May-2018 | 3.5 KiB | 70 | 52 |
| Makefile | H A D | 09-May-2018 | 22.5 KiB | 536 | 355 |
| NEWS | H A D | 09-May-2018 | 16 KiB | 373 | 266 |
| README | H A D | 09-May-2018 | 273 | 6 | 4 |
| bcf_sr_sort.c | H A D | 09-May-2018 | 21.4 KiB | 685 | 574 |
| bcf_sr_sort.h | H A D | 09-May-2018 | 3.8 KiB | 108 | 66 |
| bgzf.c | H A D | 09-May-2018 | 60.4 KiB | 2,034 | 1,600 |
| bgzip.1 | H A D | 09-May-2018 | 5.2 KiB | 178 | 137 |
| bgzip.c | H A D | 09-May-2018 | 13.6 KiB | 377 | 324 |
| config.mk.in | H A D | 09-May-2018 | 3.2 KiB | 108 | 83 |
| configure.ac | H A D | 09-May-2018 | 14.8 KiB | 404 | 344 |
| errmod.c | H A D | 09-May-2018 | 6.3 KiB | 198 | 120 |
| faidx.5 | H A D | 09-May-2018 | 4.7 KiB | 147 | 122 |
| faidx.c | H A D | 09-May-2018 | 16 KiB | 595 | 497 |
| hfile.c | H A D | 09-May-2018 | 29.1 KiB | 1,050 | 740 |
| hfile_gcs.c | H A D | 09-May-2018 | 4.2 KiB | 138 | 89 |
| hfile_internal.h | H A D | 09-May-2018 | 7.2 KiB | 187 | 57 |
| hfile_libcurl.c | H A D | 09-May-2018 | 42.1 KiB | 1,394 | 1,057 |
| hfile_net.c | H A D | 09-May-2018 | 3.1 KiB | 113 | 64 |
| hfile_s3.c | H A D | 09-May-2018 | 12.9 KiB | 467 | 362 |
| hts.c | H A D | 09-May-2018 | 90 KiB | 2,968 | 2,383 |
| hts_internal.h | H A D | 09-May-2018 | 2.7 KiB | 86 | 38 |
| hts_os.c | H A D | 09-May-2018 | 1.7 KiB | 44 | 10 |
| htsfile.1 | H A D | 09-May-2018 | 3.2 KiB | 81 | 57 |
| htsfile.c | H A D | 09-May-2018 | 7.8 KiB | 272 | 210 |
| htslib.mk | H A D | 09-May-2018 | 5.5 KiB | 177 | 114 |
| htslib.pc.in | H A D | 09-May-2018 | 490 | 16 | 13 |
| htslib_vars.mk | H A D | 09-May-2018 | 2.8 KiB | 53 | 25 |
| kfunc.c | H A D | 09-May-2018 | 9 KiB | 283 | 192 |
| knetfile.c | H A D | 09-May-2018 | 18.6 KiB | 644 | 522 |
| kstring.c | H A D | 09-May-2018 | 9.1 KiB | 396 | 322 |
| md5.c | H A D | 09-May-2018 | 10.3 KiB | 388 | 251 |
| multipart.c | H A D | 09-May-2018 | 8.2 KiB | 267 | 184 |
| plugin.c | H A D | 09-May-2018 | 5.4 KiB | 186 | 129 |
| probaln.c | H A D | 09-May-2018 | 11.8 KiB | 311 | 225 |
| realn.c | H A D | 09-May-2018 | 11.3 KiB | 286 | 236 |
| regidx.c | H A D | 09-May-2018 | 10 KiB | 343 | 270 |
| sam.5 | H A D | 09-May-2018 | 2.7 KiB | 69 | 44 |
| sam.c | H A D | 09-May-2018 | 87.4 KiB | 2,693 | 2,254 |
| synced_bcf_reader.c | H A D | 09-May-2018 | 37.1 KiB | 1,228 | 1,039 |
| tabix.1 | H A D | 09-May-2018 | 5.5 KiB | 172 | 138 |
| tabix.c | H A D | 09-May-2018 | 19.4 KiB | 546 | 474 |
| tbx.c | H A D | 09-May-2018 | 11.5 KiB | 367 | 311 |
| textutils.c | H A D | 09-May-2018 | 9.2 KiB | 396 | 310 |
| textutils_internal.h | H A D | 09-May-2018 | 7.2 KiB | 176 | 34 |
| thread_pool.c | H A D | 09-May-2018 | 39.2 KiB | 1,372 | 793 |
| thread_pool_internal.h | H A D | 09-May-2018 | 5.5 KiB | 166 | 65 |
| vcf.5 | H A D | 09-May-2018 | 3.5 KiB | 121 | 94 |
| vcf.c | H A D | 09-May-2018 | 129.6 KiB | 3,879 | 3,385 |
| vcf_sweep.c | H A D | 09-May-2018 | 5.2 KiB | 184 | 132 |
| vcfutils.c | H A D | 09-May-2018 | 32.2 KiB | 828 | 749 |
| version.sh | H A D | 09-May-2018 | 816 | 32 | 18 |
README
1HTSlib is an implementation of a unified C library for accessing common file
2formats, such as SAM, CRAM, VCF, and BCF, used for high-throughput sequencing
3data. It is the core library used by samtools and bcftools.
4
5See INSTALL for building and installation instructions.
6