1{ 2 "cells": [ 3 { 4 "cell_type": "markdown", 5 "metadata": {}, 6 "source": [ 7 "<a href=\"http://agrum.org\" target=\"blank\"><img src=\"http://agrum.gitlab.io/theme/img/logoAgrum.png\" align=\"left\" style=\"height:100px\"/></a><a rel=\"license\" href=\"http://creativecommons.org/licenses/by-nc/4.0/\"><img alt=\"Creative Commons License\" style=\"border-width:0\" src=\"https://i.creativecommons.org/l/by-nc/4.0/88x31.png\" /></a><br />This pyAgrum's notebook is licensed under a <a rel=\"license\" href=\"http://creativecommons.org/licenses/by-nc/4.0/\">Creative Commons Attribution-NonCommercial 4.0 International License</a>." 8 ] 9 }, 10 { 11 "cell_type": "code", 12 "execution_count": 1, 13 "metadata": { 14 "tags": [] 15 }, 16 "outputs": [], 17 "source": [ 18 "import pyAgrum.skbn as skbn\n", 19 "import pyAgrum.lib.notebook as gnb\n", 20 "\n", 21 "import os\n", 22 "import pandas" 23 ] 24 }, 25 { 26 "cell_type": "markdown", 27 "metadata": {}, 28 "source": [ 29 "# Initialization of parameters" 30 ] 31 }, 32 { 33 "cell_type": "markdown", 34 "metadata": {}, 35 "source": [ 36 "First, we initialize the parameters to indicate properties we want our classifier to have." 37 ] 38 }, 39 { 40 "cell_type": "code", 41 "execution_count": 2, 42 "metadata": { 43 "tags": [] 44 }, 45 "outputs": [], 46 "source": [ 47 "BNTest= skbn.BNClassifier(learningMethod = 'Chow-Liu', aPriori= 'Smoothing', aPrioriWeight = 0.5, \n", 48 " discretizationStrategy = 'quantile', usePR = True, significant_digit = 13)" 49 ] 50 }, 51 { 52 "cell_type": "markdown", 53 "metadata": {}, 54 "source": [ 55 "Then, we train the classifier thanks to two types of objects." 56 ] 57 }, 58 { 59 "cell_type": "markdown", 60 "metadata": {}, 61 "source": [ 62 "# Learn from csv file" 63 ] 64 }, 65 { 66 "cell_type": "code", 67 "execution_count": 3, 68 "metadata": { 69 "tags": [] 70 }, 71 "outputs": [], 72 "source": [ 73 "BNTest.fit(filename = 'res/creditCardTest.csv', targetName = 'Class')" 74 ] 75 }, 76 { 77 "cell_type": 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647 } 648 ], 649 "source": [ 650 "gnb.showBN(BNTest.bn)" 651 ] 652 }, 653 { 654 "cell_type": "code", 655 "execution_count": 5, 656 "metadata": { 657 "tags": [] 658 }, 659 "outputs": [ 660 { 661 "data": { 662 "image/svg+xml": [ 663 "<svg xmlns=\"http://www.w3.org/2000/svg\" xmlns:xlink=\"http://www.w3.org/1999/xlink\" width=\"69pt\" height=\"116pt\" viewBox=\"0.00 0.00 69.09 116.00\">\n", 664 "<g id=\"graph0\" class=\"graph\" transform=\"scale(1 1) rotate(0) translate(4 112)\">\n", 665 "<title>G</title>\n", 666 "<!-- Class -->\n", 667 "<g id=\"node1\" class=\"node\">\n", 668 "<title>Class</title>\n", 669 "<g id=\"a_node1\"><a xlink:title=\"(0) Class\">\n", 670 "<ellipse fill=\"#404040\" stroke=\"black\" cx=\"30.55\" cy=\"-90\" rx=\"30.59\" ry=\"18\"/>\n", 671 "<text text-anchor=\"middle\" x=\"30.55\" y=\"-86.3\" font-family=\"Times,serif\" font-size=\"14.00\" fill=\"white\">Class</text>\n", 672 "</a>\n", 673 "</g>\n", 674 "</g>\n", 675 "<!-- Time -->\n", 676 "<g id=\"node2\" 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[ 705 "gnb.showBN(BNTest.MarkovBlanket) " 706 ] 707 }, 708 { 709 "cell_type": "markdown", 710 "metadata": {}, 711 "source": [ 712 "# Learn from array-likes" 713 ] 714 }, 715 { 716 "cell_type": "markdown", 717 "metadata": {}, 718 "source": [ 719 "We use a method to transform the csv file in two array-likes in order to train from the same database." 720 ] 721 }, 722 { 723 "cell_type": "code", 724 "execution_count": 6, 725 "metadata": { 726 "tags": [] 727 }, 728 "outputs": [], 729 "source": [ 730 "xTrain, yTrain = BNTest.XYfromCSV(filename = 'res/creditCardTest.csv', target = 'Class')" 731 ] 732 }, 733 { 734 "cell_type": "code", 735 "execution_count": 7, 736 "metadata": { 737 "tags": [] 738 }, 739 "outputs": [], 740 "source": [ 741 "BNTest.fit(xTrain, yTrain)" 742 ] 743 }, 744 { 745 "cell_type": "code", 746 "execution_count": 8, 747 "metadata": { 748 "tags": [] 749 }, 750 "outputs": [ 751 { 752 "data": { 753 "image/svg+xml": [ 754 "<svg xmlns=\"http://www.w3.org/2000/svg\" 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1361 "</g>\n", 1362 "</svg>" 1363 ], 1364 "text/plain": [ 1365 "<IPython.core.display.SVG object>" 1366 ] 1367 }, 1368 "metadata": {}, 1369 "output_type": "display_data" 1370 } 1371 ], 1372 "source": [ 1373 "gnb.showBN(BNTest.MarkovBlanket) " 1374 ] 1375 }, 1376 { 1377 "cell_type": "markdown", 1378 "metadata": {}, 1379 "source": [ 1380 "# Create a classifier from a Bayesian network" 1381 ] 1382 }, 1383 { 1384 "cell_type": "markdown", 1385 "metadata": {}, 1386 "source": [ 1387 "If we already have a Bayesian network with learned parameters, we can create a classifier that uses it. In this case we do not have to train the classifier on data since it the Bayesian network is already trained." 1388 ] 1389 }, 1390 { 1391 "cell_type": "code", 1392 "execution_count": 10, 1393 "metadata": { 1394 "tags": [] 1395 }, 1396 "outputs": [], 1397 "source": [ 1398 "ClassfromBN = skbn.BNClassifier(significant_digit = 7)" 1399 ] 1400 }, 1401 { 1402 "cell_type": "code", 1403 "execution_count": 11, 1404 "metadata": { 1405 "tags": [] 1406 }, 1407 "outputs": [], 1408 "source": [ 1409 "ClassfromBN.fromTrainedModel(bn = BNTest.bn, targetAttribute = 'Class', targetModality = '1.0', \n", 1410 " threshold = BNTest.threshold, variableList = xTrain.columns.tolist())" 1411 ] 1412 }, 1413 { 1414 "cell_type": "code", 1415 "execution_count": 12, 1416 "metadata": { 1417 "tags": [] 1418 }, 1419 "outputs": [ 1420 { 1421 "data": { 1422 "image/svg+xml": [ 1423 "<svg xmlns=\"http://www.w3.org/2000/svg\" xmlns:xlink=\"http://www.w3.org/1999/xlink\" width=\"360pt\" height=\"239pt\" viewBox=\"0.00 0.00 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stroke=\"#4a4a4a\" points=\"794.5,-334.1 791,-324.1 787.5,-334.1 794.5,-334.1\"/>\n", 1972 "</a>\n", 1973 "</g>\n", 1974 "</g>\n", 1975 "</g>\n", 1976 "</svg>" 1977 ], 1978 "text/plain": [ 1979 "<IPython.core.display.SVG object>" 1980 ] 1981 }, 1982 "metadata": {}, 1983 "output_type": "display_data" 1984 } 1985 ], 1986 "source": [ 1987 "gnb.showBN(ClassfromBN.bn)" 1988 ] 1989 }, 1990 { 1991 "cell_type": "code", 1992 "execution_count": 13, 1993 "metadata": { 1994 "tags": [] 1995 }, 1996 "outputs": [ 1997 { 1998 "data": { 1999 "image/svg+xml": [ 2000 "<svg xmlns=\"http://www.w3.org/2000/svg\" xmlns:xlink=\"http://www.w3.org/1999/xlink\" width=\"69pt\" height=\"116pt\" viewBox=\"0.00 0.00 69.09 116.00\">\n", 2001 "<g id=\"graph0\" class=\"graph\" transform=\"scale(1 1) rotate(0) translate(4 112)\">\n", 2002 "<title>G</title>\n", 2003 "<!-- Class -->\n", 2004 "<g id=\"node1\" class=\"node\">\n", 2005 "<title>Class</title>\n", 2006 "<g id=\"a_node1\"><a xlink:title=\"(0) Class\">\n", 2007 "<ellipse fill=\"#404040\" stroke=\"black\" cx=\"30.55\" cy=\"-90\" rx=\"30.59\" ry=\"18\"/>\n", 2008 "<text text-anchor=\"middle\" x=\"30.55\" y=\"-86.3\" font-family=\"Times,serif\" font-size=\"14.00\" fill=\"white\">Class</text>\n", 2009 "</a>\n", 2010 "</g>\n", 2011 "</g>\n", 2012 "<!-- Time -->\n", 2013 "<g id=\"node2\" class=\"node\">\n", 2014 "<title>Time</title>\n", 2015 "<g id=\"a_node2\"><a xlink:title=\"(1) Time\">\n", 2016 "<ellipse fill=\"#404040\" stroke=\"black\" cx=\"30.55\" cy=\"-18\" rx=\"29.8\" ry=\"18\"/>\n", 2017 "<text text-anchor=\"middle\" x=\"30.55\" y=\"-14.3\" font-family=\"Times,serif\" font-size=\"14.00\" fill=\"white\">Time</text>\n", 2018 "</a>\n", 2019 "</g>\n", 2020 "</g>\n", 2021 "<!-- Class->Time -->\n", 2022 "<g id=\"edge1\" class=\"edge\">\n", 2023 "<title>Class->Time</title>\n", 2024 "<g id=\"a_edge1\"><a xlink:title=\"(0, 1) : \">\n", 2025 "<path fill=\"none\" stroke=\"#4a4a4a\" d=\"M30.55,-71.7C30.55,-63.98 30.55,-54.71 30.55,-46.11\"/>\n", 2026 "<polygon fill=\"#4a4a4a\" stroke=\"#4a4a4a\" points=\"34.05,-46.1 30.55,-36.1 27.05,-46.1 34.05,-46.1\"/>\n", 2027 "</a>\n", 2028 "</g>\n", 2029 "</g>\n", 2030 "</g>\n", 2031 "</svg>" 2032 ], 2033 "text/plain": [ 2034 "<IPython.core.display.SVG object>" 2035 ] 2036 }, 2037 "metadata": {}, 2038 "output_type": "display_data" 2039 } 2040 ], 2041 "source": [ 2042 "gnb.showBN(ClassfromBN.MarkovBlanket)" 2043 ] 2044 }, 2045 { 2046 "cell_type": "markdown", 2047 "metadata": {}, 2048 "source": [ 2049 "Then, we work with functions from scikit-learn like score.\n", 2050 "We can also call it with a csv file or two array-likes." 2051 ] 2052 }, 2053 { 2054 "cell_type": "code", 2055 "execution_count": 14, 2056 "metadata": { 2057 "tags": [] 2058 }, 2059 "outputs": [], 2060 "source": [ 2061 "xTest, yTest = ClassfromBN.XYfromCSV(filename = 'res/creditCardTest.csv', target = 'Class')" 2062 ] 2063 }, 2064 { 2065 "cell_type": "markdown", 2066 "metadata": {}, 2067 "source": [ 2068 "# Prediction with csv file" 2069 ] 2070 }, 2071 { 2072 "cell_type": "code", 2073 "execution_count": 15, 2074 "metadata": { 2075 "tags": [] 2076 }, 2077 "outputs": [ 2078 { 2079 "name": "stdout", 2080 "output_type": "stream", 2081 "text": [ 2082 "84.38% good predictions\n" 2083 ] 2084 } 2085 ], 2086 "source": [ 2087 "scoreCSV1 = BNTest.score('res/creditCardTest.csv', y = yTest)\n", 2088 "print(\"{0:.2f}% good predictions\".format(100*scoreCSV1)) " 2089 ] 2090 }, 2091 { 2092 "cell_type": "code", 2093 "execution_count": 16, 2094 "metadata": { 2095 "tags": [] 2096 }, 2097 "outputs": [ 2098 { 2099 "name": "stdout", 2100 "output_type": "stream", 2101 "text": [ 2102 "84.38% good predictions\n" 2103 ] 2104 } 2105 ], 2106 "source": [ 2107 "scoreCSV2 = ClassfromBN.score('res/creditCardTest.csv', y = yTest)\n", 2108 "print(\"{0:.2f}% good predictions\".format(100*scoreCSV2)) " 2109 ] 2110 }, 2111 { 2112 "cell_type": "markdown", 2113 "metadata": {}, 2114 "source": [ 2115 "## Prediction with array-like" 2116 ] 2117 }, 2118 { 2119 "cell_type": "code", 2120 "execution_count": 17, 2121 "metadata": { 2122 "tags": [] 2123 }, 2124 "outputs": [ 2125 { 2126 "name": "stdout", 2127 "output_type": "stream", 2128 "text": [ 2129 "84.38% good predictions\n" 2130 ] 2131 } 2132 ], 2133 "source": [ 2134 "scoreAR1 = BNTest.score(xTest, yTest)\n", 2135 "print(\"{0:.2f}% good predictions\".format(100*scoreAR1)) " 2136 ] 2137 }, 2138 { 2139 "cell_type": "code", 2140 "execution_count": 18, 2141 "metadata": { 2142 "tags": [] 2143 }, 2144 "outputs": [ 2145 { 2146 "name": "stdout", 2147 "output_type": "stream", 2148 "text": [ 2149 "84.38% good predictions\n" 2150 ] 2151 } 2152 ], 2153 "source": [ 2154 "scoreAR2 = ClassfromBN.score(xTest, yTest)\n", 2155 "print(\"{0:.2f}% good predictions\".format(100*scoreAR2)) " 2156 ] 2157 }, 2158 { 2159 "cell_type": "markdown", 2160 "metadata": {}, 2161 "source": [ 2162 "# ROC and Precision-Recall curves with all methods" 2163 ] 2164 }, 2165 { 2166 "cell_type": "markdown", 2167 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"tags": [] 4432 }, 4433 "source": [ 4434 "# Explaining the classifier : ShapValues and Independence Lists\n", 4435 "\n", 4436 "(tbd)" 4437 ] 4438 }, 4439 { 4440 "cell_type": "code", 4441 "execution_count": null, 4442 "metadata": {}, 4443 "outputs": [], 4444 "source": [] 4445 } 4446 ], 4447 "metadata": { 4448 "kernelspec": { 4449 "display_name": "Python 3 (ipykernel)", 4450 "language": "python", 4451 "name": "python3" 4452 }, 4453 "language_info": { 4454 "codemirror_mode": { 4455 "name": "ipython", 4456 "version": 3 4457 }, 4458 "file_extension": ".py", 4459 "mimetype": "text/x-python", 4460 "name": "python", 4461 "nbconvert_exporter": "python", 4462 "pygments_lexer": "ipython3", 4463 "version": "3.9.6" 4464 } 4465 }, 4466 "nbformat": 4, 4467 "nbformat_minor": 4 4468} 4469
