1echo
2start h2o
3
4basis
5  * library 6-31g*
6end
7#load residue 3 from pdb file
8geometry noautosym noautoz nocenter
9 load test.pdb select resi 3
10end
11
12dft
13vectors input atomic
14end
15task dft gradient
16
17#The same system but now specified explicitly
18geometry noautosym noautoz nocenter
19O   -13.980   1.241 -14.026
20H   -13.936   0.318 -13.644
21H   -14.107   1.903 -13.287
22end
23
24dft
25vectors input atomic
26end
27task dft gradient
28
29geometry noautosym noautoz nocenter
30 load test.pdb select resi 3 name OW
31 load test.pdb select resi 3 name 2HW
32 load test.pdb select resi 3 name 3HW
33end
34
35dft
36vectors input atomic
37end
38task dft gradient
39
40geometry noautosym noautoz nocenter
41 load test.pdb select rname WTR
42end
43
44dft
45vectors input atomic
46end
47task dft gradient
48
49geometry noautosym noautoz nocenter
50 load test.pdb frame 2 select rname WTR
51end
52
53dft
54vectors input atomic
55end
56task dft gradient
57
58geometry noautosym noautoz nocenter
59 load test.pdb select rname WTR
60end
61
62dft
63vectors input atomic
64end
65task dft gradient
66
67geometry noautosym noautoz nocenter
68 load test.pdb select id 6:8
69end
70
71dft
72vectors input atomic
73end
74task dft gradient
75
76
77