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Name Date Size #Lines LOC

..03-May-2022-

abyss/H03-May-2022-217,275169,119

ad2vcf/H03-May-2022-1,337876

artemis/H03-May-2022-604,835492,547

avida/H03-May-2022-503,386416,406

babel/babel-1.6/H03-May-2022-27,39219,600

bamtools/H03-May-2022-41,32226,058

bamutil/H03-May-2022-772,235735,035

bbmap/H03-May-2022-857,802741,030

bcftools/H03-May-2022-194,626178,594

bedtools/H03-May-2022-1,237,9681,198,325

bfc/H03-May-2022-8,0296,699

bio-mocha/H03-May-2022-202,982185,528

bioawk/H03-May-2022-8,8327,463

biococoa/H03-May-2022-37,25227,152

biolibc/H03-May-2022-36,89521,489

biolibc-tools/H03-May-2022-2,2491,626

bioparser/H03-May-2022-2,6932,363

biosig/H03-May-2022-234,125188,108

biosoup/H03-May-2022-917740

biostar-tools/H03-May-2022-118

bolt-lmm/H03-May-2022-168,242164,370

bowtie/H03-May-2022-249,091231,817

bowtie2/H03-May-2022-348,496297,130

bwa/H03-May-2022-24,14519,583

canu/H03-May-2022-724,993618,436

cd-hit/H03-May-2022-24,03319,451

cdbfasta/cdbfasta/H03-May-2022-8,0776,408

checkm/H03-May-2022-28,13318,626

clustal-omega/H03-May-2022-112,47379,196

clustalw/H03-May-2022-53,68141,825

cufflinks/H03-May-2022-122,21890,934

ddocent/H03-May-2022-11,2248,840

diamond/H03-May-2022-206,384146,523

dsr-pdb/H03-May-2022-58,99646,042

edlib/H03-May-2022-172,697170,663

emboss/H03-May-2022-5,932,1405,295,417

erminej/H03-May-2022-266195

exonerate/H03-May-2022-78,32862,852

fasta/H03-May-2022-35,76329,099

fasta3/H03-May-2022-108,26078,263

fastahack/H03-May-2022-1,6401,224

fastdnaml/H03-May-2022-7,5475,619

fastool/H03-May-2022-552420

fastp/H03-May-2022-17,10811,901

fastqc/H03-May-2022-888649

fasttree/H03-May-2022-10,2117,966

fastx-toolkit/H03-May-2022-12,0398,658

figtree/H03-May-2022-50,38933,121

flash/H03-May-2022-5,8754,331

fluctuate/fluctuate1.4/H03-May-2022-8,2196,560

freebayes/H03-May-2022-789,807643,619

garlic/garlic-1.6/H03-May-2022-105,98556,207

gatk/H03-May-2022-1,608,7701,426,027

gcta/H03-May-2022-24,99817,592

gemma/H03-May-2022-425,473414,368

generand/H03-May-2022-677402

gff2ps/H03-May-2022-4,2303,654

gffread/H03-May-2022-53,50544,762

gmap/H03-May-2022-667,507570,309

gperiodic/H03-May-2022-69,52853,058

graphlan/H03-May-2022-81,22778,122

groopm/H03-May-2022-13,5519,820

haplohseq/H03-May-2022-506,439504,150

hhsuite/H03-May-2022-238,532205,477

hisat2/H03-May-2022-196,441155,847

hmmer/H03-May-2022-385,266271,964

htslib/H03-May-2022-154,612119,037

hyphy/H03-May-2022-474,297343,907

infernal/H03-May-2022-794,738626,096

iolib/H03-May-2022-122,39988,418

iqtree/H03-May-2022-387,103266,545

jalview/H03-May-2022-587,701406,703

jellyfish/H03-May-2022-134,072103,380

kallisto/H03-May-2022-185,266161,868

lamarc/H03-May-2022-793,639588,260

libbigwig/H03-May-2022-9,9507,480

libgff/H03-May-2022-12,2539,871

libgtextutils/H03-May-2022-3,9182,173

libneurosim/H03-May-2022-4,1163,018

libnuml/H03-May-2022-30,73814,273

libsbml/H03-May-2022-2,609,2181,793,375

libsedml/H03-May-2022-238,03798,931

mafft/H03-May-2022-90,96875,937

mapm3/H03-May-2022-66,23750,671

migrate/migrate-3.6.11/H03-May-2022-761,131630,504

minimap2/H03-May-2022-21,37817,838

mmseqs2/H03-May-2022-432,785343,300

molden/H03-May-2022-1,079,4081,009,371

mopac/H03-May-2022-97,46377,709

mothur/H03-May-2022-236,467168,609

mrbayes/H03-May-2022-164,169136,000

mummer/H03-May-2022-1,907,7761,874,608

muscle/H03-May-2022-34,19726,985

ncbi-blast+/H03-May-2022-2,489,1971,872,358

ncbi-cxx-toolkit/H03-May-2022-10,754,4209,649,808

ncbi-entrez-direct/H03-May-2022-1,370,6001,221,777

ncbi-toolkit/ncbi/H03-May-2022-2,455,4141,933,975

ncbi-vdb/H03-May-2022-1,472,5431,015,345

ngs-sdk/H03-May-2022-70,02345,106

p5-AcePerl/H03-May-2022-34,88320,105

p5-Bio-ASN1-EntrezGene/H03-May-2022-45,32543,600

p5-Bio-Cluster/H03-May-2022-7,0783,918

p5-Bio-Coordinate/H03-May-2022-7,5284,412

p5-Bio-DB-EMBL/H03-May-2022-1,4601,168

p5-Bio-DB-NCBIHelper/H03-May-2022-5,4733,162

p5-Bio-Das/H03-May-2022-11,2886,589

p5-Bio-Das-Lite/H03-May-2022-4,8013,741

p5-Bio-FeatureIO/H03-May-2022-6,6424,026

p5-Bio-GFF3/H03-May-2022-7,2256,368

p5-Bio-Glite/Bio-Glite-0.10/H03-May-2022-3,1481,764

p5-Bio-Graphics/H03-May-2022-49,81127,497

p5-Bio-MAGETAB/H03-May-2022-26,51114,155

p5-Bio-NEXUS/Bio-NEXUS-0.78/H03-May-2022-101,50888,115

p5-Bio-Phylo/H03-May-2022-85,97457,705

p5-Bio-SCF/H03-May-2022-1,117725

p5-Bio-Variation/H03-May-2022-10,3506,603

p5-BioPerl/H03-May-2022-574,524395,574

p5-BioPerl-Run/H03-May-2022-120,49887,153

p5-TrimGalore/H03-May-2022-4,4813,342

p5-transdecoder/H03-May-2022-64,06655,971

paml/H03-May-2022-53,24044,023

pbbam/H03-May-2022-95,45565,136

pbseqan/H03-May-2022-302,537166,552

peak-classifier/H03-May-2022-2,0001,332

pear-merger/H03-May-2022-33,87528,834

phyml/H03-May-2022-115,70083,616

picard-tools/H03-May-2022-118

plink/H03-May-2022-341,834285,112

pooler/H03-May-2022-6,5745,257

primer3/H03-May-2022-251,912237,493

prodigal/H03-May-2022-7,1015,685

prodigy-lig/H03-May-2022-1,3621,108

protomol/H03-May-2022-222,419186,491

psi88/psi88/H03-May-2022-10,3356,645

py-Genesis-PyAPI/H03-May-2022-1,7321,079

py-PySCeS/H03-May-2022-62,17045,139

py-biom-format/H03-May-2022-24,58719,190

py-biopython/H03-May-2022-888,206774,732

py-bx-python/H03-May-2022-234,123183,537

py-crossmap/H03-May-2022-47,86139,659

py-cutadapt/H03-May-2022-35,73430,778

py-deeptools/H03-May-2022-18,64614,901

py-deeptoolsintervals/H03-May-2022-4,4663,476

py-dnaio/H03-May-2022-22,47119,762

py-ete3/H03-May-2022-122,22197,928

py-gffutils/H03-May-2022-59,35556,958

py-goatools/H03-May-2022-205,615200,608

py-gtfparse/H03-May-2022-1,227869

py-hits/H03-May-2022-11,6329,089

py-libnuml/H03-May-2022-30,73814,273

py-libsedml/H03-May-2022-238,03798,931

py-loompy/H03-May-2022-3,9063,194

py-macs2/H03-May-2022-7,266,1757,155,427

py-multiqc/H03-May-2022-47,64438,154

py-ont-fast5-api/H03-May-2022-6,5775,167

py-orange3-bioinformatics/H03-May-2022-28,61621,554

py-orange3-single-cell/H03-May-2022-114,618110,810

py-pandas-charm/H03-May-2022-1,318982

py-py2bit/H03-May-2022-1,8821,415

py-pybigwig/H03-May-2022-7,7195,826

py-pyfaidx/H03-May-2022-3,6392,902

py-pysam/H03-May-2022-666,410465,751

py-python-libsbml/H03-May-2022-2,796,7831,811,384

py-pywgsim/H03-May-2022-6,4225,396

py-resdk/H03-May-2022-13,38010,144

py-scikit-bio/H03-May-2022-140,911106,299

py-xenaPython/H03-May-2022-1,3671,073

pyfasta/H03-May-2022-2,1451,587

python-nexus/H03-May-2022-5,6934,498

rainbow/H03-May-2022-9,6968,150

rampler/H03-May-2022-500397

readseq/H03-May-2022-4,3893,691

recombine/recombine1.41/H03-May-2022-17,20212,907

sam2pairwise/H03-May-2022-1,124603

samtools/H03-May-2022-263,118247,418

scrm/H03-May-2022-25,81918,203

seaview/H03-May-2022-58,08347,354

seqan/H03-May-2022-371,234215,890

seqan-apps/H03-May-2022-2,141,9651,872,514

seqan1/H03-May-2022-583,056448,944

seqio/seqio-1.2.2/H03-May-2022-34,42926,222

seqtk/H03-May-2022-2,6392,100

sigviewer/H03-May-2022-26,94318,595

sim4/H03-May-2022-8,0486,244

slclust/H03-May-2022-729430

smithwaterman/H03-May-2022-3,9232,582

snpeff/H03-May-2022-365,631317,820

spoa/H03-May-2022-5,5784,688

sra-tools/H03-May-2022-1,959,5711,378,382

stacks/H03-May-2022-128,43089,655

star/H03-May-2022-77,04363,743

stringtie/H03-May-2022-235,289169,089

subread/H03-May-2022-640,108622,190

tRNAscan-SE/H03-May-2022-183,382167,315

tabixpp/H03-May-2022-332265

treekin/H03-May-2022-32,82126,198

treepuzzle/tree-puzzle-5.2/H03-May-2022-81,44365,286

trimadap/H03-May-2022-1,2931,028

trimmomatic/H03-May-2022-737613

ugene/H03-May-2022-2,186,5351,717,170

vcf-split/H03-May-2022-1,8861,193

vcf2hap/H03-May-2022-3,1322,826

vcflib/H03-May-2022-384,095303,023

vcftools/H03-May-2022-36,45630,150

velvet/velvet_1.2.10/H03-May-2022-854,948815,705

viennarna/H03-May-2022-1,403,7451,190,091

vsearch/H03-May-2022-45,25531,235

vt/H03-May-2022-309,516216,942

wise/wise2.4.1/H03-May-2022-676,736400,889