1!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! 2!! How to set up AFNI defaults using X11: 3!! a) put lines like this in your .Xdefaults file in your home directory; 4!! b) edit to fit your needs 5!! c) log out and log back in (or use the command "xrdb -merge .Xdefaults") 6!! 7!! The values in this file are the values "hard-wired" into AFNI, and 8!! so you only need to put into the .Xdefaults file those values you 9!! wish to change. 10!! 11!! The resources up to and including AFNI*gamma also apply 12!! to the program TO3D -- all those after are specific to AFNI. 13 14!! font to use in most widgets 15AFNI*fontList: 9x15bold=charset1 16 17!! background color in most widgets 18AFNI*background: gray40 19AFNI*borderColor: gray40 20 21!! background color in most popup and pulldown menu panes 22!! (this choice gives some contrast with the gray40 overall background) 23AFNI*menu*background: black 24 25!! foreground color in most widgets 26AFNI*foreground: yellow 27 28!! color in the "trough" of the slider controls (images and threshold) 29AFNI*troughColor: green 30 31!! color for quit and other "hot" buttons 32AFNI*hotcolor: red3 33 34!! gray/color levels used for image display 35!! (overridden by the -ncol option) 36AFNI*ncolors: 100 37 38!! correction for screen 39!! (overridden by the -gamma option) 40AFNI*gamma: 1.0 41 42!! This option is actually only for TO3D; 43!! it specifies the initial value to put in the 44!! field-of-view widget (in mm). 45AFNI*init_fov: 240.0 46 47!!**** 48!!**** Resources below here apply only to AFNI, not to TO3D 49!!**** 50!! auto-purge datasets from memory? (True or False) 51!! (overridden by the -purge option) 52AFNI*purge: False 53 54!! Whether to use the "big" Talairach box, which 55!! extends 10 mm more inferior than the AFNI 1.0x 56!! to accomodate the cerebellum. 57AFNI*tlrc_big: True 58 59!! Whether or not to use periodic montage layouts. 60AFNI*montage_periodic: True 61 62!! Use these to set the colors used in the BHelp popup 63!! AFNI*help*background: #ffffaa 64!! AFNI*help*foreground: black 65 66!! Set this to False to turn off the window manager 67!! borders on the BHelp popup 68AFNI*help*helpborder: True 69 70!! number of slices to scroll in image viewers when 71!! Shift key is pressed along with arrowpad button 72AFNI*bigscroll: 5 73 74!! default resampling modes (from the set NN, Li, Cu, Bk) 75!! and voxel dimension (always cubical, in mm) 76AFNI*resam_anat: Li 77AFNI*resam_func: NN 78AFNI*resam_vox: 1.0 79 80!! Whether to pop a list chooser down on double click or not 81!! "Set" means double click is the same as the Set button 82!! (and will pop the chooser down) 83!! "Apply" means double click is the same as the Apply button 84!! (and will keep the chooser up) 85!! 86AFNI*chooser_doubleclick: Set 87 88!! For scrolling list choosers (the "Switch" buttons), 89!! defines the max number of entries to display in 90!! a window before attaching scrollbars. 91!! (N.B.: if the number of entries to choose between 92!! is only a few more than this, then the 93!! window will be expanded and no scrollbars used.) 94AFNI*chooser_listmax: 10 95 96!! Initial dimensions of graphing region, in pixels 97AFNI*graph_width: 512 98AFNI*graph_height: 512 99 100!! Initial number of points to ignore in graphs and FIMs 101!! (overridden by the -ignore option) 102AFNI*fim_ignore: 0 103 104!! number of overlay colors to allocate: from 2 to 99 105AFNI*ncolovr: 20 106 107!! Definitions of colors (RGB or color database strings). 108!! Note that color number 0 means "none" and can't be redefined. 109!! These color indices (1 .. ncolovr) can be used in various places below. 110 111!! Note that if you just want to add new colors, you can 112!! a) set AFNI*ncolovr to a larger value 113!! b) supply "ovdef" and "ovlab" values for each new color index 114!! from 21 .. ncolovr 115 116AFNI*ovdef01: #ffff00 117AFNI*ovdef02: #ffcc00 118AFNI*ovdef03: #ff9900 119AFNI*ovdef04: #ff6900 120AFNI*ovdef05: #ff4400 121AFNI*ovdef06: #ff0000 122AFNI*ovdef07: #0000ff 123AFNI*ovdef08: #0044ff 124AFNI*ovdef09: #0069ff 125AFNI*ovdef10: #0099ff 126AFNI*ovdef11: #00ccff 127AFNI*ovdef12: #00ffff 128AFNI*ovdef13: green 129AFNI*ovdef14: limegreen 130AFNI*ovdef15: violet 131AFNI*ovdef16: hotpink 132AFNI*ovdef17: white 133AFNI*ovdef18: #dddddd 134AFNI*ovdef19: #bbbbbb 135AFNI*ovdef20: black 136 137!! Labels used for colors in "choosers" 138!! (only 1st 9 characters are used). 139 140AFNI*ovlab01: yellow 141AFNI*ovlab02: yell-oran 142AFNI*ovlab03: oran-yell 143AFNI*ovlab04: orange 144AFNI*ovlab05: oran-red 145AFNI*ovlab06: red 146AFNI*ovlab07: dk-blue 147AFNI*ovlab08: blue 148AFNI*ovlab09: lt-blue1 149AFNI*ovlab10: lt-blue2 150AFNI*ovlab11: blue-cyan 151AFNI*ovlab12: cyan 152AFNI*ovlab13: green 153AFNI*ovlab14: limegreen 154AFNI*ovlab15: violet 155AFNI*ovlab16: hotpink 156AFNI*ovlab17: white 157AFNI*ovlab18: gry-dd 158AFNI*ovlab19: gry-bb 159AFNI*ovlab20: black 160 161!! index of color used for crosshairs at startup 162AFNI*ovcrosshair: 13 163 164!! color used for primary marker at startup 165AFNI*ovmarksprimary: 17 166 167!! color used for secondary markers at startup 168AFNI*ovmarkssecondary: 14 169 170!! pixel width for markers at startup 171AFNI*markssize: 8 172 173!! pixel gap for markers at startup 174AFNI*marksgap: 3 175 176!! pixel gap for crosshairs at startup 177AFNI*crosshairgap: 5 178 179!! Used to set default colors for graph windows. 180!! The values are positive color indices, or 181!! can be -1 == brightest color in the overlay list 182!! -2 == darkest color 183!! -3 == reddest color 184!! -4 == greenest color 185!! -5 == bluest color 186 187!! boxes == Outlines drawn around each graph 188!! backg == Background 189!! grid == Uniformly spaced vertical lines in each graph 190!! text == Text (except for value under current time index) 191!! data == Data timeseries graph 192!! ideal == Ideal timeseries graph 193!! (also used to indicate the current time index) 194!! ort == Ort timeseries graph 195!! ignore == Used to indicate which points are ignored for FIM 196!! dplot == Double plot overlay color 197 198AFNI*graph_boxes_color: -2 199AFNI*graph_backg_color: -1 200AFNI*graph_grid_color: 1 201AFNI*graph_text_color: -2 202AFNI*graph_data_color: -2 203AFNI*graph_ideal_color: -3 204AFNI*graph_ort_color: -4 205AFNI*graph_ignore_color: -5 206AFNI*graph_dplot_color: -3 207 208!! Used to set the whether certain types of 209!! lines in the graph windows are thick or 210!! not. Use 0 to indicate "thin" and use 211!! "1" to indicate "thick". 212 213AFNI*graph_boxes_thick: 0 214AFNI*graph_grid_thick: 0 215AFNI*graph_data_thick: 0 216AFNI*graph_ideal_thick: 0 217AFNI*graph_ort_thick: 0 218AFNI*graph_dplot_thick: 0 219 220!! Used to set the gap between sub-graphs 221 222AFNI*graph_ggap: 0 223 224!! Used to set the font for drawing text into 225!! graph windows. The default font is chosen 226!! from a list "tfont_hopefuls" in the source file 227!! display.h. You can find out what fonts are 228!! available on your system by using the command 229!! "xlsfonts | more" 230 231AFNI*gfont: 7x14 232 233!! Used to set the default fim polort order 234 235AFNI*fim_polort: 1 236 237!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! 238!! font to use in pbar widgets 239AFNI*pbar*fontList: 7x13bold=charset1 240 241!! A smaller font for pbar 242!!AFNI*pbar*fontList: 6x10=charset1 243 244!! start pbar in positive mode (True or False) 245AFNI*pbar_posfunc: False 246 247!! hide process of changing pbar panes (True or False) 248AFNI*pbar_hide: False 249 250!! initial number of panes in the pbar (pos and sgn modes) 251AFNI*pbar_pos_pane_count: 8 252AFNI*pbar_sgn_pane_count: 9 253 254!! Set the color "pbar" initial thresholds and colors 255!! 256!! _pos --> positive only pbar (range from 1.0 to 0.0) 257!! _sgn --> signed pbar (range from 1.0 to -1.0) 258!! 259!! _panexx --> data for case with xx panes (from 02 to 10) 260!! 261!! _thryy --> yy'th threshold: 00 is top (always 1.0), 262!! 01 is next to top, up to yy = xx 263!! (always 0.0 for pos_, -1.0 for sgn_) 264!! 265!! _ovyy --> yy'th color index: 00 is top pane, up to yy = xx-1 266!! 267!! The thr values must decrease monotonically with yy. 268!! The ov values must be color indices from the ovdef table 269!! (including color 0 --> no color). 270!! 271!! N.B.: If you supply values for a particular xx, you must 272!! supply ALL the values (_thr and _ov), or AFNI will 273!! ignore these values and use its built in defaults 274!! for that number of panes. 275 276AFNI*pbar_pos_pane02_thr00: 1.0 277AFNI*pbar_pos_pane02_thr01: 0.5 278AFNI*pbar_pos_pane02_thr02: 0.0 279 280AFNI*pbar_pos_pane02_ov00: 1 281AFNI*pbar_pos_pane02_ov01: 0 282 283AFNI*pbar_pos_pane03_thr00: 1.0 284AFNI*pbar_pos_pane03_thr01: 0.67 285AFNI*pbar_pos_pane03_thr02: 0.33 286AFNI*pbar_pos_pane03_thr03: 0.0 287 288AFNI*pbar_pos_pane03_ov00: 1 289AFNI*pbar_pos_pane03_ov01: 6 290AFNI*pbar_pos_pane03_ov02: 0 291 292AFNI*pbar_pos_pane04_thr00: 1.0 293AFNI*pbar_pos_pane04_thr01: 0.75 294AFNI*pbar_pos_pane04_thr02: 0.50 295AFNI*pbar_pos_pane04_thr03: 0.25 296AFNI*pbar_pos_pane04_thr04: 0.00 297 298AFNI*pbar_pos_pane04_ov00: 1 299AFNI*pbar_pos_pane04_ov01: 4 300AFNI*pbar_pos_pane04_ov02: 6 301AFNI*pbar_pos_pane04_ov03: 0 302 303AFNI*pbar_pos_pane05_thr00: 1.0 304AFNI*pbar_pos_pane05_thr01: 0.80 305AFNI*pbar_pos_pane05_thr02: 0.60 306AFNI*pbar_pos_pane05_thr03: 0.40 307AFNI*pbar_pos_pane05_thr04: 0.20 308AFNI*pbar_pos_pane05_thr05: 0.00 309 310AFNI*pbar_pos_pane05_ov00: 1 311AFNI*pbar_pos_pane05_ov01: 3 312AFNI*pbar_pos_pane05_ov02: 5 313AFNI*pbar_pos_pane05_ov03: 6 314AFNI*pbar_pos_pane05_ov04: 0 315 316AFNI*pbar_pos_pane06_thr00: 1.0 317AFNI*pbar_pos_pane06_thr01: 0.84 318AFNI*pbar_pos_pane06_thr02: 0.67 319AFNI*pbar_pos_pane06_thr03: 0.50 320AFNI*pbar_pos_pane06_thr04: 0.33 321AFNI*pbar_pos_pane06_thr05: 0.16 322AFNI*pbar_pos_pane06_thr06: 0.00 323 324AFNI*pbar_pos_pane06_ov00: 1 325AFNI*pbar_pos_pane06_ov01: 2 326AFNI*pbar_pos_pane06_ov02: 3 327AFNI*pbar_pos_pane06_ov03: 5 328AFNI*pbar_pos_pane06_ov04: 6 329AFNI*pbar_pos_pane06_ov05: 0 330 331AFNI*pbar_pos_pane07_thr00: 1.0 332AFNI*pbar_pos_pane07_thr01: 0.90 333AFNI*pbar_pos_pane07_thr02: 0.75 334AFNI*pbar_pos_pane07_thr03: 0.60 335AFNI*pbar_pos_pane07_thr04: 0.45 336AFNI*pbar_pos_pane07_thr05: 0.30 337AFNI*pbar_pos_pane07_thr06: 0.15 338AFNI*pbar_pos_pane07_thr07: 0.00 339 340AFNI*pbar_pos_pane07_ov00: 1 341AFNI*pbar_pos_pane07_ov01: 2 342AFNI*pbar_pos_pane07_ov02: 3 343AFNI*pbar_pos_pane07_ov03: 4 344AFNI*pbar_pos_pane07_ov04: 5 345AFNI*pbar_pos_pane07_ov05: 6 346AFNI*pbar_pos_pane07_ov06: 0 347 348AFNI*pbar_pos_pane08_thr00: 1.0 349AFNI*pbar_pos_pane08_thr01: 0.80 350AFNI*pbar_pos_pane08_thr02: 0.70 351AFNI*pbar_pos_pane08_thr03: 0.60 352AFNI*pbar_pos_pane08_thr04: 0.50 353AFNI*pbar_pos_pane08_thr05: 0.40 354AFNI*pbar_pos_pane08_thr06: 0.30 355AFNI*pbar_pos_pane08_thr07: 0.15 356AFNI*pbar_pos_pane08_thr08: 0.00 357 358AFNI*pbar_pos_pane08_ov00: 1 359AFNI*pbar_pos_pane08_ov01: 2 360AFNI*pbar_pos_pane08_ov02: 3 361AFNI*pbar_pos_pane08_ov03: 4 362AFNI*pbar_pos_pane08_ov04: 5 363AFNI*pbar_pos_pane08_ov05: 6 364AFNI*pbar_pos_pane08_ov06: 16 365AFNI*pbar_pos_pane08_ov07: 0 366 367AFNI*pbar_pos_pane09_thr00: 1.0 368AFNI*pbar_pos_pane09_thr01: 0.90 369AFNI*pbar_pos_pane09_thr02: 0.80 370AFNI*pbar_pos_pane09_thr03: 0.70 371AFNI*pbar_pos_pane09_thr04: 0.60 372AFNI*pbar_pos_pane09_thr05: 0.50 373AFNI*pbar_pos_pane09_thr06: 0.25 374AFNI*pbar_pos_pane09_thr07: 0.15 375AFNI*pbar_pos_pane09_thr08: 0.05 376AFNI*pbar_pos_pane09_thr09: 0.00 377 378AFNI*pbar_pos_pane09_ov00: 1 379AFNI*pbar_pos_pane09_ov01: 2 380AFNI*pbar_pos_pane09_ov02: 3 381AFNI*pbar_pos_pane09_ov03: 4 382AFNI*pbar_pos_pane09_ov04: 5 383AFNI*pbar_pos_pane09_ov05: 6 384AFNI*pbar_pos_pane09_ov06: 16 385AFNI*pbar_pos_pane09_ov07: 15 386AFNI*pbar_pos_pane09_ov08: 0 387 388AFNI*pbar_pos_pane10_thr00: 1.0 389AFNI*pbar_pos_pane10_thr01: 0.90 390AFNI*pbar_pos_pane10_thr02: 0.80 391AFNI*pbar_pos_pane10_thr03: 0.70 392AFNI*pbar_pos_pane10_thr04: 0.60 393AFNI*pbar_pos_pane10_thr05: 0.50 394AFNI*pbar_pos_pane10_thr06: 0.40 395AFNI*pbar_pos_pane10_thr07: 0.30 396AFNI*pbar_pos_pane10_thr08: 0.20 397AFNI*pbar_pos_pane10_thr09: 0.10 398AFNI*pbar_pos_pane10_thr10: 0.00 399 400AFNI*pbar_pos_pane10_ov00: 1 401AFNI*pbar_pos_pane10_ov01: 2 402AFNI*pbar_pos_pane10_ov02: 3 403AFNI*pbar_pos_pane10_ov03: 4 404AFNI*pbar_pos_pane10_ov04: 5 405AFNI*pbar_pos_pane10_ov05: 6 406AFNI*pbar_pos_pane10_ov06: 16 407AFNI*pbar_pos_pane10_ov07: 15 408AFNI*pbar_pos_pane10_ov08: 7 409AFNI*pbar_pos_pane10_ov09: 0 410 411AFNI*pbar_sgn_pane02_thr00: 1.0 412AFNI*pbar_sgn_pane02_thr01: 0.0 413AFNI*pbar_sgn_pane02_thr02: -1.0 414 415AFNI*pbar_sgn_pane02_ov00: 1 416AFNI*pbar_sgn_pane02_ov01: 11 417 418AFNI*pbar_sgn_pane03_thr00: 1.0 419AFNI*pbar_sgn_pane03_thr01: 0.05 420AFNI*pbar_sgn_pane03_thr02: -0.05 421AFNI*pbar_sgn_pane03_thr03: -1.0 422 423AFNI*pbar_sgn_pane03_ov00: 1 424AFNI*pbar_sgn_pane03_ov01: 0 425AFNI*pbar_sgn_pane03_ov02: 11 426 427AFNI*pbar_sgn_pane04_thr00: 1.0 428AFNI*pbar_sgn_pane04_thr01: 0.50 429AFNI*pbar_sgn_pane04_thr02: 0.0 430AFNI*pbar_sgn_pane04_thr03: -0.50 431AFNI*pbar_sgn_pane04_thr04: -1.0 432 433AFNI*pbar_sgn_pane04_ov00: 1 434AFNI*pbar_sgn_pane04_ov01: 4 435AFNI*pbar_sgn_pane04_ov02: 8 436AFNI*pbar_sgn_pane04_ov03: 11 437 438AFNI*pbar_sgn_pane05_thr00: 1.0 439AFNI*pbar_sgn_pane05_thr01: 0.50 440AFNI*pbar_sgn_pane05_thr02: 0.05 441AFNI*pbar_sgn_pane05_thr03: -0.05 442AFNI*pbar_sgn_pane05_thr04: -0.50 443AFNI*pbar_sgn_pane05_thr05: -1.0 444 445AFNI*pbar_sgn_pane05_ov00: 1 446AFNI*pbar_sgn_pane05_ov01: 4 447AFNI*pbar_sgn_pane05_ov02: 0 448AFNI*pbar_sgn_pane05_ov03: 8 449AFNI*pbar_sgn_pane05_ov04: 11 450 451AFNI*pbar_sgn_pane06_thr00: 1.0 452AFNI*pbar_sgn_pane06_thr01: 0.66 453AFNI*pbar_sgn_pane06_thr02: 0.33 454AFNI*pbar_sgn_pane06_thr03: 0.00 455AFNI*pbar_sgn_pane06_thr04: -0.33 456AFNI*pbar_sgn_pane06_thr05: -0.66 457AFNI*pbar_sgn_pane06_thr06: -1.0 458 459AFNI*pbar_sgn_pane06_ov00: 1 460AFNI*pbar_sgn_pane06_ov01: 3 461AFNI*pbar_sgn_pane06_ov02: 5 462AFNI*pbar_sgn_pane06_ov03: 7 463AFNI*pbar_sgn_pane06_ov04: 9 464AFNI*pbar_sgn_pane06_ov05: 11 465 466AFNI*pbar_sgn_pane07_thr00: 1.0 467AFNI*pbar_sgn_pane07_thr01: 0.66 468AFNI*pbar_sgn_pane07_thr02: 0.33 469AFNI*pbar_sgn_pane07_thr03: 0.05 470AFNI*pbar_sgn_pane07_thr04: -0.05 471AFNI*pbar_sgn_pane07_thr05: -0.33 472AFNI*pbar_sgn_pane07_thr06: -0.66 473AFNI*pbar_sgn_pane07_thr07: -1.0 474 475AFNI*pbar_sgn_pane07_ov00: 1 476AFNI*pbar_sgn_pane07_ov01: 3 477AFNI*pbar_sgn_pane07_ov02: 5 478AFNI*pbar_sgn_pane07_ov03: 0 479AFNI*pbar_sgn_pane07_ov04: 7 480AFNI*pbar_sgn_pane07_ov05: 9 481AFNI*pbar_sgn_pane07_ov06: 11 482 483AFNI*pbar_sgn_pane08_thr00: 1.0 484AFNI*pbar_sgn_pane08_thr01: 0.75 485AFNI*pbar_sgn_pane08_thr02: 0.50 486AFNI*pbar_sgn_pane08_thr03: 0.25 487AFNI*pbar_sgn_pane08_thr04: 0.00 488AFNI*pbar_sgn_pane08_thr05: -0.25 489AFNI*pbar_sgn_pane08_thr06: -0.50 490AFNI*pbar_sgn_pane08_thr07: -0.75 491AFNI*pbar_sgn_pane08_thr08: -1.00 492 493AFNI*pbar_sgn_pane08_ov00: 1 494AFNI*pbar_sgn_pane08_ov01: 2 495AFNI*pbar_sgn_pane08_ov02: 4 496AFNI*pbar_sgn_pane08_ov03: 5 497AFNI*pbar_sgn_pane08_ov04: 8 498AFNI*pbar_sgn_pane08_ov05: 9 499AFNI*pbar_sgn_pane08_ov06: 10 500AFNI*pbar_sgn_pane08_ov07: 11 501 502AFNI*pbar_sgn_pane09_thr00: 1.0 503AFNI*pbar_sgn_pane09_thr01: 0.75 504AFNI*pbar_sgn_pane09_thr02: 0.50 505AFNI*pbar_sgn_pane09_thr03: 0.25 506AFNI*pbar_sgn_pane09_thr04: 0.05 507AFNI*pbar_sgn_pane09_thr05: -0.05 508AFNI*pbar_sgn_pane09_thr06: -0.25 509AFNI*pbar_sgn_pane09_thr07: -0.50 510AFNI*pbar_sgn_pane09_thr08: -0.75 511AFNI*pbar_sgn_pane09_thr09: -1.00 512 513AFNI*pbar_sgn_pane09_ov00: 1 514AFNI*pbar_sgn_pane09_ov01: 2 515AFNI*pbar_sgn_pane09_ov02: 4 516AFNI*pbar_sgn_pane09_ov03: 5 517AFNI*pbar_sgn_pane09_ov04: 0 518AFNI*pbar_sgn_pane09_ov05: 8 519AFNI*pbar_sgn_pane09_ov06: 9 520AFNI*pbar_sgn_pane09_ov07: 10 521AFNI*pbar_sgn_pane09_ov08: 11 522 523AFNI*pbar_sgn_pane10_thr00: 1.0 524AFNI*pbar_sgn_pane10_thr01: 0.80 525AFNI*pbar_sgn_pane10_thr02: 0.60 526AFNI*pbar_sgn_pane10_thr03: 0.40 527AFNI*pbar_sgn_pane10_thr04: 0.20 528AFNI*pbar_sgn_pane10_thr05: 0.00 529AFNI*pbar_sgn_pane10_thr06: -0.20 530AFNI*pbar_sgn_pane10_thr07: -0.40 531AFNI*pbar_sgn_pane10_thr08: -0.60 532AFNI*pbar_sgn_pane10_thr09: -0.80 533AFNI*pbar_sgn_pane10_thr10: -1.00 534 535AFNI*pbar_sgn_pane10_ov00: 1 536AFNI*pbar_sgn_pane10_ov01: 2 537AFNI*pbar_sgn_pane10_ov02: 3 538AFNI*pbar_sgn_pane10_ov03: 4 539AFNI*pbar_sgn_pane10_ov04: 5 540AFNI*pbar_sgn_pane10_ov05: 7 541AFNI*pbar_sgn_pane10_ov06: 8 542AFNI*pbar_sgn_pane10_ov07: 9 543AFNI*pbar_sgn_pane10_ov08: 10 544AFNI*pbar_sgn_pane10_ov09: 11 545 546!! End of MCW AFNI X11 Resources 547!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! 548