1 /* Copyright (C) 2004-2007 The Chemistry Development Kit (CDK) project 2 * 3 * Contact: cdk-devel@lists.sourceforge.net 4 * 5 * This program is free software; you can redistribute it and/or 6 * modify it under the terms of the GNU Lesser General Public License 7 * as published by the Free Software Foundation; either version 2.1 8 * of the License, or (at your option) any later version. 9 * 10 * This program is distributed in the hope that it will be useful, 11 * but WITHOUT ANY WARRANTY; without even the implied warranty of 12 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the 13 * GNU Lesser General Public License for more details. 14 * 15 * You should have received a copy of the GNU Lesser General Public License 16 * along with this program; if not, write to the Free Software 17 * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA. 18 */ 19 package org.openscience.cdk.isomorphism.matchers.smarts; 20 21 import org.openscience.cdk.interfaces.IAtom; 22 import org.openscience.cdk.CDKConstants; 23 import org.openscience.cdk.interfaces.IChemObjectBuilder; 24 25 /** 26 * This matcher any non-aromatic atom. This assumes that aromaticity in the 27 * molecule has been perceived. 28 * 29 * @cdk.module smarts 30 * @cdk.githash 31 * @cdk.keyword SMARTS 32 */ 33 @Deprecated 34 public class AliphaticAtom extends SMARTSAtom { 35 36 private static final long serialVersionUID = 5145049891214205622L; 37 38 /** 39 * Creates a new instance 40 * 41 */ AliphaticAtom(IChemObjectBuilder builder)42 public AliphaticAtom(IChemObjectBuilder builder) { 43 super(builder); 44 setFlag(CDKConstants.ISALIPHATIC, true); 45 } 46 47 /* 48 * (non-Javadoc) 49 * @see 50 * org.openscience.cdk.isomorphism.matchers.smarts.SMARTSAtom#matches(org 51 * .openscience.cdk.interfaces.IAtom) 52 */ 53 @Override matches(IAtom atom)54 public boolean matches(IAtom atom) { 55 return !atom.isAromatic(); 56 57 } 58 59 /* 60 * (non-Javadoc) 61 * @see org.openscience.cdk.PseudoAtom#toString() 62 */ 63 @Override toString()64 public String toString() { 65 return "AliphaticAtom()"; 66 } 67 } 68