1 /*
2 Teem: Tools to process and visualize scientific data and images .
3 Copyright (C) 2012, 2011, 2010, 2009 University of Chicago
4 Copyright (C) 2008, 2007, 2006, 2005 Gordon Kindlmann
5 Copyright (C) 2004, 2003, 2002, 2001, 2000, 1999, 1998 University of Utah
6
7 This library is free software; you can redistribute it and/or
8 modify it under the terms of the GNU Lesser General Public License
9 (LGPL) as published by the Free Software Foundation; either
10 version 2.1 of the License, or (at your option) any later version.
11 The terms of redistributing and/or modifying this software also
12 include exceptions to the LGPL that facilitate static linking.
13
14 This library is distributed in the hope that it will be useful,
15 but WITHOUT ANY WARRANTY; without even the implied warranty of
16 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
17 Lesser General Public License for more details.
18
19 You should have received a copy of the GNU Lesser General Public License
20 along with this library; if not, write to Free Software Foundation, Inc.,
21 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
22 */
23
24 #include "ten.h"
25 #include "privateTen.h"
26
27 #define INFO "Generate barycentric histograms of anisotropy"
28 static const char *_tend_anhistInfoL =
29 (INFO
30 ". The barycentric space used is either one of Westin's "
31 "triple of spherical, linear, and planar anisotropy. The bin "
32 "counts in the histogram are weighted by the confidence value.");
33
34 int
tend_anhistMain(int argc,const char ** argv,const char * me,hestParm * hparm)35 tend_anhistMain(int argc, const char **argv, const char *me,
36 hestParm *hparm) {
37 int pret;
38 hestOpt *hopt = NULL;
39 char *perr, *err;
40 airArray *mop;
41
42 int version, res, right;
43 Nrrd *nin, *nout, *nwght;
44 char *outS;
45
46 hestOptAdd(&hopt, "v", "westin version", airTypeInt, 1, 1, &version, "1",
47 "Which version of Westin's anisotropy metric triple "
48 "to use, either \"1\" or \"2\"");
49 hestOptAdd(&hopt, "w", "nweight", airTypeOther, 1, 1, &nwght, "",
50 "how to weigh contributions to histogram. By default "
51 "(not using this option), the increment is one bin count per "
52 "sample, but by giving a nrrd, the value in the nrrd at the "
53 "corresponding location will be the bin count increment ",
54 NULL, NULL, nrrdHestNrrd);
55 hestOptAdd(&hopt, "r", "res", airTypeInt, 1, 1, &res, NULL,
56 "resolution of anisotropy plot");
57 hestOptAdd(&hopt, "right", NULL, airTypeInt, 0, 0, &right, NULL,
58 "sample a right-triangle-shaped region, instead of "
59 "a roughly equilateral triangle. ");
60 hestOptAdd(&hopt, "i", "nin", airTypeOther, 1, 1, &nin, "-",
61 "input diffusion tensor volume", NULL, NULL, nrrdHestNrrd);
62 hestOptAdd(&hopt, "o", "nout", airTypeString, 1, 1, &outS, "-",
63 "output image (floating point)");
64
65 mop = airMopNew();
66 airMopAdd(mop, hopt, (airMopper)hestOptFree, airMopAlways);
67 USAGE(_tend_anhistInfoL);
68 PARSE();
69 airMopAdd(mop, hopt, (airMopper)hestParseFree, airMopAlways);
70
71 nout = nrrdNew();
72 airMopAdd(mop, nout, (airMopper)nrrdNuke, airMopAlways);
73
74 if (tenAnisoHistogram(nout, nin, nwght, right, version, res)) {
75 airMopAdd(mop, err=biffGetDone(TEN), airFree, airMopAlways);
76 fprintf(stderr, "%s: trouble making histogram:\n%s\n", me, err);
77 airMopError(mop); return 1;
78 }
79 if (nrrdSave(outS, nout, NULL)) {
80 airMopAdd(mop, err=biffGetDone(NRRD), airFree, airMopAlways);
81 fprintf(stderr, "%s: trouble writing:\n%s\n", me, err);
82 airMopError(mop); return 1;
83 }
84
85 airMopOkay(mop);
86 return 0;
87 }
88 /* TEND_CMD(anhist, INFO); */
89 unrrduCmd tend_anhistCmd = { "anhist", INFO, tend_anhistMain };
90