1@@ -1,715 +1,367 @@
2 $variables
3-$variables$`%c%.matrix`
4-[1]   0 561
5+$variables$.__C__Biodetection
6+[1]   0 286
7
8-$variables$.__NAMESPACE__.
9-[1] 7547   62
10-
11-$variables$.__S3MethodsTable__.
12-[1] 7749   62
13-
14-$variables$.onAttach
15-[1] 7811  820
16-
17-$variables$.onLoad
18-[1] 8631  299
19-
20-$variables$.packageName
21-[1] 8930   57
22-
23-$variables$add.isolates
24-[1] 8987  671
25-
26-$variables$as.edgelist.sna
27-[1] 9658 8752
28-
29-$variables$as.sociomatrix.sna
30-[1] 18410  6439
31-
32-$variables$bbnam
33-[1] 24849   477
34-
35-$variables$bbnam.actor
36-[1] 25326  9516
37-
38-$variables$bbnam.bf
39-[1] 34842  4990
40-
41-$variables$bbnam.fixed
42-[1] 39832  3960
43-
44-$variables$bbnam.jntlik
45-[1] 43792   547
46-
47-$variables$bbnam.jntlik.slice
48-[1] 44339  1004
49-
50-$variables$bbnam.pooled
51-[1] 45343  8158
52-
53-$variables$bbnam.probtie
54-[1] 53501   773
55-
56-$variables$betweenness
57-[1] 54274  3346
58-
59-$variables$bicomponent.dist
60-[1] 57620  2903
61-
62-$variables$blockmodel
63-[1] 60523  6614
64-
65-$variables$blockmodel.expand
66-[1] 67137  2219
67-
68-$variables$bn
69-[1] 69356  8637
70-
71-$variables$bn.nlpl.dyad
72-[1] 77993  1013
73-
74-$variables$bn.nlpl.edge
75-[1] 79006  1634
76-
77-$variables$bn.nlpl.triad
78-[1] 80640  1057
79-
80-$variables$bn.nltl
81-[1] 81697  1000
82-
83-$variables$bonpow
84-[1] 82697  2354
85-
86-$variables$brokerage
87-[1] 85051 10585
88-
89-$variables$centralgraph
90-[1] 95636  1012
91-
92-$variables$centralization
93-[1] 96648  1203
94-
95-$variables$clique.census
96-[1] 97851  3663
97-
98-$variables$closeness
99-[1] 101514   3153
100-
101-$variables$coef.bn
102-[1] 104667    485
103-
104-$variables$coef.lnam
105-[1] 105152    649
106-
107-$variables$component.dist
108-[1] 105801   2769
109-
110-$variables$component.largest
111-[1] 108570   2435
112-
113-$variables$component.size.byvertex
114-[1] 111005   1417
115-
116-$variables$components
117-[1] 112422    718
118-
119-$variables$connectedness
120-[1] 113140   1125
121-
122-$variables$consensus
123-[1] 114265   7392
124-
125-$variables$cug.test
126-[1] 121657   5668
127-
128-$variables$cugtest
129-[1] 127325   3096
130-
131-$variables$cutpoints
132-[1] 130421   2064
133-
134-$variables$degree
135-[1] 132485   2216
136-
137-$variables$diag.remove
138-[1] 134701    901
139-
140-$variables$dyad.census
141-[1] 135602   2866
142-
143-$variables$efficiency
144-[1] 138468   1764
145-
146-$variables$ego.extract
147-[1] 140232   2112
148-
149-$variables$equiv.clust
150-[1] 142344   2171
151-
152-$variables$eval.edgeperturbation
153-[1] 144515    616
154-
155-$variables$evcent
156-[1] 145131   2319
157-
158-$variables$event2dichot
159-[1] 147450   3694
160-
161-$variables$flowbet
162-[1] 151144   4376
163-
164-$variables$gapply
165-[1] 155520   2422
166-
167-$variables$gclust.boxstats
168-[1] 157942   1099
169-
170-$variables$gclust.centralgraph
171-[1] 159041   1357
172-
173-$variables$gcor
174-[1] 160398   3693
175-
176-$variables$gcov
177-[1] 164091   3694
178-
179-$variables$gden
180-[1] 167785   2194
181-
182-$variables$gdist.plotdiff
183-[1] 169979    816
184-
185-$variables$gdist.plotstats
186-[1] 170795   4487
187-
188-$variables$geodist
189-[1] 175282   2175
190-
191-$variables$gilschmidt
192-[1] 177457   1429
193-
194-$variables$gliop
195-[1] 178886   1002
196-
197-$variables$gplot
198-[1] 179888  22817
199+$variables$.__C__CD
200+[1] 286 283
201
202-$variables$gplot.arrow
203-[1] 202705   9429
204+$variables$.__C__CountsBio
205+[1] 569 288
206
207-$variables$gplot.layout.adj
208-[1] 212134    599
209+$variables$.__C__GCbias
210+[1] 857 286
211
212-$variables$gplot.layout.circle
213-[1] 212733    735
214+$variables$.__C__Output
215+[1] 1143 2240
216
217-$variables$gplot.layout.circrand
218-[1] 213468    459
219+$variables$.__C__PCA
220+[1] 3383  284
221
222-$variables$gplot.layout.eigen
223-[1] 213927   1512
224+$variables$.__C__Saturation
225+[1] 3667  285
226
227-$variables$gplot.layout.fruchtermanreingold
228-[1] 215439   2906
229+$variables$.__C__lengthbias
230+[1] 3952  288
231
232-$variables$gplot.layout.geodist
233-[1] 218345    597
234+$variables$.__C__myInfo
235+[1] 4240 1158
236
237-$variables$gplot.layout.hall
238-[1] 218942    866
239-
240-$variables$gplot.layout.kamadakawai
241-[1] 219808   2573
242-
243-$variables$gplot.layout.mds
244-[1] 222381   1663
245-
246-$variables$gplot.layout.princoord
247-[1] 224044   1500
248-
249-$variables$gplot.layout.random
250-[1] 225544   1322
251-
252-$variables$gplot.layout.rmds
253-[1] 226866    601
254-
255-$variables$gplot.layout.segeo
256-[1] 227467    540
257-
258-$variables$gplot.layout.seham
259-[1] 228007    605
260-
261-$variables$gplot.layout.spring
262-[1] 228612   4757
263-
264-$variables$gplot.layout.springrepulse
265-[1] 233369    463
266-
267-$variables$gplot.layout.target
268-[1] 233832   3612
269-
270-$variables$gplot.loop
271-[1] 237444   4659
272-
273-$variables$gplot.target
274-[1] 242103   3484
275-
276-$variables$gplot.vertex
277-[1] 245587   1623
278-
279-$variables$gplot3d
280-[1] 247210   8292
281-
282-$variables$gplot3d.arrow
283-[1] 255502   3709
284-
285-$variables$gplot3d.layout.adj
286-[1] 259211    601
287-
288-$variables$gplot3d.layout.eigen
289-[1] 259812   1512
290-
291-$variables$gplot3d.layout.fruchtermanreingold
292-[1] 261324   2263
293-
294-$variables$gplot3d.layout.geodist
295-[1] 263587    599
296-
297-$variables$gplot3d.layout.hall
298-[1] 264186    863
299-
300-$variables$gplot3d.layout.kamadakawai
301-[1] 265049   2679
302-
303-$variables$gplot3d.layout.mds
304-[1] 267728   1675
305-
306-$variables$gplot3d.layout.princoord
307-[1] 269403   1569
308-
309-$variables$gplot3d.layout.random
310-[1] 270972   1474
311-
312-$variables$gplot3d.layout.rmds
313-[1] 272446    603
314-
315-$variables$gplot3d.layout.segeo
316-[1] 273049    542
317-
318-$variables$gplot3d.layout.seham
319-[1] 273591    607
320-
321-$variables$gplot3d.loop
322-[1] 274198   3031
323-
324-$variables$graphcent
325-[1] 277229   1811
326-
327-$variables$grecip
328-[1] 279040   4960
329-
330-$variables$gscor
331-[1] 284000   6036
332-
333-$variables$gscov
334-[1] 290036   6037
335-
336-$variables$gt
337-[1] 296073   1256
338-
339-$variables$gtrans
340-[1] 297329   6741
341-
342-$variables$gvectorize
343-[1] 304070   2237
344-
345-$variables$hdist
346-[1] 306307   3865
347-
348-$variables$hierarchy
349-[1] 310172   1696
350-
351-$variables$infocent
352-[1] 311868   3259
353-
354-$variables$interval.graph
355-[1] 315127   2420
356-
357-$variables$is.connected
358-[1] 317547    549
359-
360-$variables$is.edgelist.sna
361-[1] 318096    827
362-
363-$variables$is.isolate
364-[1] 318923   1029
365-
366-$variables$isolates
367-[1] 319952    926
368-
369-$variables$kcores
370-[1] 320878   1770
371-
372-$variables$kcycle.census
373-[1] 322648   3209
374-
375-$variables$kpath.census
376-[1] 325857   3929
377-
378-$variables$lab.optimize
379-[1] 329786   1025
380-
381-$variables$lab.optimize.anneal
382-[1] 330811   5809
383-
384-$variables$lab.optimize.exhaustive
385-[1] 336620   2468
386-
387-$variables$lab.optimize.gumbel
388-[1] 339088   3227
389-
390-$variables$lab.optimize.hillclimb
391-[1] 342315   3891
392-
393-$variables$lab.optimize.mc
394-[1] 346206   2276
395-
396-$variables$lnam
397-[1] 348482  18248
398+$variables$.__NAMESPACE__.
399+[1] 12405    62
400
401-$variables$loadcent
402-[1] 366730   2278
403+$variables$.__S3MethodsTable__.
404+[1] 12607    62
405
406-$variables$logMean
407-[1] 369008    555
408+$variables$`.__T__dat2save:NOISeq`
409+[1] 18038    62
410
411-$variables$logSub
412-[1] 369563    685
413+$variables$`.__T__explo.plot:NOISeq`
414+[1] 21700    62
415
416-$variables$logSum
417-[1] 370248    518
418+$variables$`.__T__show:methods`
419+[1] 185265     63
420
421-$variables$lower.tri.remove
422-[1] 370766   1043
423+$variables$.calcFactorQuantile
424+[1] 185328    643
425
426-$variables$lubness
427-[1] 371809   2301
428+$variables$.calcFactorWeighted
429+[1] 185971   2087
430
431-$variables$make.stochastic
432-[1] 374110   4837
433+$variables$.calcNormFactors
434+[1] 188058   1215
435
436-$variables$maxflow
437-[1] 378947   2646
438+$variables$.packageName
439+[1] 189273     60
440
441-$variables$mutuality
442-[1] 381593    544
443+$variables$ARSyNcomponents
444+[1] 189333   1768
445
446-$variables$nacf
447-[1] 382137   3061
448+$variables$ARSyNmodel
449+[1] 191101   2635
450
451-$variables$neighborhood
452-[1] 385198   2139
453+$variables$ARSyNseq
454+[1] 193736   2972
455
456-$variables$netcancor
457-[1] 387337   6916
458+$variables$ASCA.1f
459+[1] 196708   2220
460
461-$variables$netlm
462-[1] 394253  11714
463+$variables$ASCA.2f
464+[1] 198928   2743
465
466-$variables$netlogit
467-[1] 405967  12672
468+$variables$ASCA.3f
469+[1] 201671   3688
470
471-$variables$npostpred
472-[1] 418639    416
473+$variables$ASCAfun.res
474+[1] 205359   1279
475
476-$variables$nties
477-[1] 419055   1235
478+$variables$ASCAfun.triple
479+[1] 206638   5571
480
481-$variables$numperm
482-[1] 420290   1333
483+$variables$ASCAfun1
484+[1] 212209   2782
485
486-$variables$plot.bbnam
487-[1] 421623    234
488+$variables$ASCAfun12
489+[1] 214991   3631
490
491-$variables$plot.bbnam.actor
492-[1] 421857   3064
493+$variables$ASCAfun2
494+[1] 218622   4050
495
496-$variables$plot.bbnam.fixed
497-[1] 424921    728
498+$variables$CV
499+[1] 222672    345
500
501-$variables$plot.bbnam.pooled
502-[1] 425649   1927
503+$variables$DE.plot
504+[1] 223017  16368
505
506-$variables$plot.blockmodel
507-[1] 427576   1990
508+$variables$GC.dat
509+[1] 239385   7931
510
511-$variables$plot.bn
512-[1] 429566   3658
513+$variables$GC.plot
514+[1] 247316   3588
515
516-$variables$plot.cug.test
517-[1] 433224    731
518+$variables$MD
519+[1] 250904   1285
520
521-$variables$plot.cugtest
522-[1] 433955    652
523+$variables$MD.plot
524+[1] 252189    768
525
526-$variables$plot.equiv.clust
527-[1] 434607    413
528+$variables$MDbio
529+[1] 252957   2281
530
531-$variables$plot.lnam
532-[1] 435020   3655
533+$variables$Output
534+[1] 255238    462
535
536-$variables$plot.qaptest
537-[1] 438675    651
538+$variables$PCA.GENES
539+[1] 255700   1649
540
541-$variables$plot.sociomatrix
542-[1] 439326   3263
543+$variables$PCA.dat
544+[1] 257349   1115
545
546-$variables$potscalered.mcmc
547-[1] 442589    954
548+$variables$PCA.plot
549+[1] 258464   3098
550
551-$variables$prestige
552-[1] 443543   4447
553+$variables$QCreport
554+[1] 261562  15013
555
556-$variables$print.bayes.factor
557-[1] 447990    616
558+$variables$addData
559+[1] 276575   5787
560
561-$variables$print.bbnam
562-[1] 448606    201
563+$variables$allMD
564+[1] 282362  10266
565
566-$variables$print.bbnam.actor
567-[1] 448807   2023
568+$variables$allMDbio
569+[1] 292628   8960
570
571-$variables$print.bbnam.fixed
572-[1] 450830    866
573+$variables$biodetection.dat
574+[1] 301588   3499
575
576-$variables$print.bbnam.pooled
577-[1] 451696   2021
578+$variables$biodetection.plot
579+[1] 305087   7985
580
581-$variables$print.blockmodel
582-[1] 453717   1587
583+$variables$busca
584+[1] 313072    426
585
586-$variables$print.bn
587-[1] 455304    872
588+$variables$cd.dat
589+[1] 313498   4515
590
591-$variables$print.cug.test
592-[1] 456176    644
593+$variables$cd.plot
594+[1] 318013   2357
595
596-$variables$print.cugtest
597-[1] 456820    449
598+$variables$countsbio.dat
599+[1] 320370   7361
600
601-$variables$print.equiv.clust
602-[1] 457269    595
603+$variables$countsbio.plot
604+[1] 327731   6156
605
606-$variables$print.lnam
607-[1] 457864    642
608+$variables$dat
609+[1] 333887   1421
610
611-$variables$print.netcancor
612-[1] 458506   1870
613+$variables$dat2save
614+[1] 335308    401
615
616-$variables$print.netlm
617-[1] 460376   2741
618+$variables$data2report
619+[1] 335709   1640
620
621-$variables$print.netlogit
622-[1] 463117   2134
623+$variables$degenes
624+[1] 337349   2298
625
626-$variables$print.qaptest
627-[1] 465251    448
628+$variables$explo.plot
629+[1] 339647    416
630
631-$variables$print.summary.bayes.factor
632-[1] 465699   1556
633+$variables$filtered.data
634+[1] 340063   3504
635
636-$variables$print.summary.bbnam
637-[1] 467255    201
638+$variables$int.mult
639+[1] 343567    578
640
641-$variables$print.summary.bbnam.actor
642-[1] 467456   4015
643+$variables$length.dat
644+[1] 344145   7935
645
646-$variables$print.summary.bbnam.fixed
647-[1] 471471   1021
648+$variables$length.plot
649+[1] 352080   3549
650
651-$variables$print.summary.bbnam.pooled
652-[1] 472492   2859
653+$variables$logscaling
654+[1] 355629    704
655
656-$variables$print.summary.blockmodel
657-[1] 475351   2447
658+$variables$make.ASCA.design
659+[1] 356333    979
660
661-$variables$print.summary.bn
662-[1] 477798   3220
663+$variables$miscolores
664+[1] 357312    168
665
666-$variables$print.summary.brokerage
667-[1] 481018   1398
668+$variables$myDfunction
669+[1] 357480    608
670
671-$variables$print.summary.cugtest
672-[1] 482416   1153
673+$variables$mypretty
674+[1] 358088   1244
675
676-$variables$print.summary.lnam
677-[1] 483569   4402
678+$variables$n.menor
679+[1] 359332    421
680
681-$variables$print.summary.netcancor
682-[1] 487971   3338
683+$variables$noceros
684+[1] 359753    456
685
686-$variables$print.summary.netlm
687-[1] 491309   4083
688+$variables$noiseq
689+[1] 360209   4099
690
691-$variables$print.summary.netlogit
692-[1] 495392   4160
693+$variables$noiseqbio
694+[1] 364308   6161
695
696-$variables$print.summary.qaptest
697-[1] 499552   1154
698+$variables$plot.y2
699+[1] 370469   2410
700
701-$variables$pstar
702-[1] 500706   8639
703+$variables$probdeg
704+[1] 372879   1399
705
706-$variables$qaptest
707-[1] 509345   1304
708+$variables$ranking
709+[1] 374278   1038
710
711-$variables$reachability
712-[1] 510649   2096
713+$variables$readData
714+[1] 375316   2539
715
716-$variables$read.dot
717-[1] 512745   1508
718+$variables$rpkm
719+[1] 377855   1016
720
721-$variables$read.nos
722-[1] 514253   1427
723+$variables$saturation.dat
724+[1] 378871   6983
725
726-$variables$redist
727-[1] 515680   5254
728+$variables$saturation.plot
729+[1] 385854   6714
730
731-$variables$rewire.ud
732-[1] 520934   1289
733+$variables$share.info
734+[1] 392568   5438
735
736-$variables$rewire.ws
737-[1] 522223   1345
738+$variables$sim.samples
739+[1] 398006   1485
740
741-$variables$rgbn
742-[1] 523568   3630
743+$variables$sinceros
744+[1] 399491    761
745
746-$variables$rgnm
747-[1] 527198   2754
748+$variables$tmm
749+[1] 400252   1494
750
751-$variables$rgnmix
752-[1] 529952   3644
753+$variables$uqua
754+[1] 401746   1700
755
756-$variables$rgraph
757-[1] 533596   3332
758
759-$variables$rguman
760-[1] 536928   2836
761+$references
762+$references$`env::1`
763+[1] 5706 6699
764
765-$variables$rgws
766-[1] 539764   1749
767+$references$`env::10`
768+[1] 20320   270
769
770-$variables$rmperm
771-[1] 541513   1394
772+$references$`env::11`
773+[1] 18100  1110
774
775-$variables$rperm
776-[1] 542907    710
777+$references$`env::12`
778+[1] 19210  1110
779
780-$variables$sdmat
781-[1] 543617   1626
782+$references$`env::13`
783+[1] 181233   4032
784
785-$variables$se.lnam
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787+$references$`env::14`
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789
790-$variables$sedist
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792+$references$`env::15`
793+[1] 139943  20409
794
795-$variables$simmelian
796-[1] 551119   1029
797+$references$`env::16`
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799
800-$variables$sociomatrixplot
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802+$references$`env::17`
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804
805-$variables$sr2css
806-[1] 555411    826
807+$references$`env::18`
808+[1] 137619   2324
809
810-$variables$stackcount
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812+$references$`env::19`
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814
815-$variables$stresscent
816-[1] 556593   2275
817+$references$`env::2`
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819
820-$variables$structdist
821-[1] 558868   5365
822+$references$`env::20`
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824
825-$variables$structure.statistics
826-[1] 564233   1325
827+$references$`env::21`
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829
830-$variables$summary.bayes.factor
831-[1] 565558   1076
832+$references$`env::22`
833+[1] 32250   152
834
835-$variables$summary.bbnam
836-[1] 566634    379
837+$references$`env::23`
838+[1] 23480  8770
839
840-$variables$summary.bbnam.actor
841-[1] 567013    385
842+$references$`env::24`
843+[1] 112363   4819
844
845-$variables$summary.bbnam.fixed
846-[1] 567398    386
847+$references$`env::25`
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849
850-$variables$summary.bbnam.pooled
851-[1] 567784    386
852+$references$`env::26`
853+[1] 36359   347
854
855-$variables$summary.blockmodel
856-[1] 568170    334
857+$references$`env::27`
858+[1] 33177  3182
859
860-$variables$summary.bn
861-[1] 568504    376
862+$references$`env::28`
863+[1] 32402   775
864
865-$variables$summary.brokerage
866-[1] 568880    304
867+$references$`env::29`
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869
870-$variables$summary.cugtest
871-[1] 569184    381
872+$references$`env::3`
873+[1] 5538  168
874
875-$variables$summary.lnam
876-[1] 569565    349
877+$references$`env::30`
878+[1] 37581  1787
879
880-$variables$summary.netcancor
881-[1] 569914    383
882+$references$`env::31`
883+[1] 39368   321
884
885-$variables$summary.netlm
886-[1] 570297    379
887+$references$`env::32`
888+[1] 89109 23254
889
890-$variables$summary.netlogit
891-[1] 570676    382
892+$references$`env::33`
893+[1] 129040   2484
894
895-$variables$summary.qaptest
896-[1] 571058    381
897+$references$`env::34`
898+[1] 128873    167
899
900-$variables$symmetrize
901-[1] 571439   4336
902+$references$`env::35`
903+[1] 123275   5598
904
905-$variables$triad.census
906-[1] 575775   1992
907+$references$`env::36`
908+[1] 137467    152
909
910-$variables$triad.classify
911-[1] 577767   1663
912+$references$`env::37`
913+[1] 132265   5202
914
915-$variables$upper.tri.remove
916-[1] 579430   1036
917+$references$`env::38`
918+[1] 131524    741
919
920-$variables$write.dl
921-[1] 580466   2744
922+$references$`env::39`
923+[1] 160352  20409
924
925-$variables$write.nos
926-[1] 583210   1860
927+$references$`env::4`
928+[1] 12467   140
929
930+$references$`env::5`
931+[1] 16338  1700
932
933-$references
934-$references$`env::1`
935-[1]  866 6681
936+$references$`env::6`
937+[1] 16069   269
938
939-$references$`env::2`
940-[1] 561 140
941+$references$`env::7`
942+[1] 12669  1700
943
944-$references$`env::3`
945-[1] 701 165
946+$references$`env::8`
947+[1] 14369  1700
948
949-$references$`env::4`
950-[1] 7609  140
951+$references$`env::9`
952+[1] 20590  1110
953
954
955 $compressed
956 [1] TRUE
957
958