57 		vertLimit=new int[maxRows+1];  in MultiStateAligner10ts()
59 		Arrays.fill(vertLimit, BADoff);  in MultiStateAligner10ts()
190 		vertLimit[rows]=minScore_off;  in fillLimitedX()  field in MultiStateAligner10ts
195 …		vertLimit[i]=Tools.max(vertLimit[i+1]-(prevDefined ? POINTSoff_MATCH2 : POINTSoff_MATCH), floor);  in fillLimitedX()
198 				vertLimit[i]=Tools.max(vertLimit[i+1]-POINTSoff_NOCALL, floor);  in fillLimitedX()
234 			final int vlimit=vertLimit[row];  in fillLimitedX()
665 		vertLimit[rows]=minScore_off;  in fillBanded1()
670 …		vertLimit[i]=Tools.max(vertLimit[i+1]-(prevDefined ? POINTSoff_MATCH2 : POINTSoff_MATCH), floor);  in fillBanded1()
673 				vertLimit[i]=Tools.max(vertLimit[i+1]-POINTSoff_NOCALL, floor);  in fillBanded1()
709 			final int vlimit=vertLimit[row];  in fillBanded1()
1117 		vertLimit[rows]=minScore_off;
1122 …		vertLimit[i]=Tools.max(vertLimit[i+1]-(prevDefined ? POINTSoff_MATCH2 : POINTSoff_MATCH), floor);
1125 				vertLimit[i]=Tools.max(vertLimit[i+1]-POINTSoff_NOCALL, floor);
1161 			final int vlimit=vertLimit[row];
3437 	public final int[] vertLimit;
3443 		for(int i=0; i<=rows; i++){sb.append(vertLimit[i]>>SCOREOFFSET).append(",");}