Lines Matching refs:maxColumns

49 		packed=KillSwitch.allocInt3D(3, maxRows+1, maxColumns+1);  in MultiStateAligner9Flat()
50 		grefbuffer=KillSwitch.allocByte1D(maxColumns+2);  in MultiStateAligner9Flat()
52 		horizLimit=KillSwitch.allocInt1D(maxColumns+1);  in MultiStateAligner9Flat()
133 …refStartLoc+", "+refEndLoc+", "+rows+", "+maxRows+", "+columns+", "+maxColumns+"\n"+new String(rea…  in fillLimitedX()
134 …assert(columns<=maxColumns) : "Check that values are in-bounds before calling this function: "+col…  in fillLimitedX()
135 …refStartLoc+", "+refEndLoc+", "+rows+", "+maxRows+", "+columns+", "+maxColumns+"\n"+new String(rea…  in fillLimitedX()
138 …refStartLoc+", "+refEndLoc+", "+rows+", "+maxRows+", "+columns+", "+maxColumns+"\n"+new String(rea…  in fillLimitedX()
140 …refStartLoc+", "+refEndLoc+", "+rows+", "+maxRows+", "+columns+", "+maxColumns+"\n"+new String(rea…  in fillLimitedX()
615 		if(rows>maxRows || columns>maxColumns){  in fillUnlimited()
616 …ption("rows="+rows+", maxRows="+maxRows+", cols="+columns+", maxCols="+maxColumns+"\n"+new String(…  in fillUnlimited()
620 …assert(columns<=maxColumns) : "Check that values are in-bounds before calling this function: "+col…  in fillUnlimited()  local
862 …assert(columns<=maxColumns) : "Check that values are in-bounds before calling this function: "+col…