340                       bool diffStrand, float overlapFraction,   in allHits()  argument
375                     if ( (sameStrand == false && diffStrand == false)  in allHits()
379                          (diffStrand == true && strands_are_same == false)  in allHits()
399                      bool sameStrand, bool diffStrand, float overlapFraction, bool reciprocal) {  in anyHits()  argument
433                     if ( (sameStrand == false && diffStrand == false)  in anyHits()
437                         (diffStrand == true && strands_are_same == false)  in anyHits()
457 void BedFile::countHits(const BED &a, bool sameStrand, bool diffStrand, bool countsOnly) {  in countHits()  argument
479                     (diffStrand == true && strands_are_same == true)  in countHits()
513 void BedFile::countSplitHits(const vector<BED> &bedBlocks, bool sameStrand, bool diffStrand, bool c…  in countSplitHits()  argument
546                         (diffStrand == true && strands_are_same == true)  in countSplitHits()
589 void BedFile::countListHits(const BED &a, int index, bool sameStrand, bool diffStrand) {  in countListHits()  argument
614                     (diffStrand == true && strands_are_same == true)  in countListHits()